Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1719.9 836 100.0
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1627.5 869 92.2
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1431.4 872 80.7
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1338.9 868 75.2
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1323.9 868 74.3
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1316.2 868 73.8
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1315.4 866 74.0
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1314.3 867 73.2
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1307.7 865 73.8
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1304.3 868 73.3
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1302.3 868 73.4
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1301.2 864 74.1
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1301.2 868 72.2
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1300.4 868 73.3
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1298.5 883 71.5
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1298.5 868 73.2
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1293.5 874 72.0
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1292.7 865 73.2
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1291.6 864 73.6
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1288.5 865 72.7
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1288.5 868 72.7
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1286.2 867 72.0
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1285.8 878 71.3
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1282.3 867 71.9
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1278.1 877 71.0
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1277.7 877 71.4
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1276.5 868 71.1
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1275.0 870 70.9
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1271.5 866 71.8
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1271.5 864 71.5
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1267.7 868 71.4
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1266.9 864 71.5
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1266.1 865 71.4
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1266.1 865 71.3
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1263.8 865 71.9
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1262.3 864 71.3
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1262.3 871 71.2
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1260.4 867 71.7
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1259.2 869 71.9
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1258.4 865 71.2
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1257.7 865 71.6
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1256.1 872 69.5
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1254.6 863 69.8
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1252.7 881 69.5
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1250.7 869 69.0
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1250.0 860 70.6
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1249.2 886 69.6
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1249.2 862 69.6
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1246.1 869 70.0
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1239.9 864 69.9
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1234.6 864 70.0
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1233.8 869 70.1
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1230.3 871 69.3
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1228.4 862 69.7
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1228.0 862 68.4
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1226.8 862 68.3
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1225.7 861 69.1
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1222.6 862 68.8
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1222.6 863 68.5
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1221.8 859 68.8
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1214.5 862 67.6
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1211.1 865 68.8
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1209.9 864 67.6
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1209.9 869 67.2
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 0.0e+00 1209.1 749 80.1
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1207.6 864 67.9
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1203.0 874 67.2
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1202.6 860 68.5
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1196.4 864 67.7
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1194.1 864 66.7
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1193.3 864 67.8
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1192.9 864 66.6
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1192.9 864 66.7
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1191.8 864 66.6
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1191.0 885 66.8
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1186.4 866 66.5
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1186.0 866 66.5
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1185.2 874 67.3
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1181.4 865 66.1
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1177.9 861 66.4
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1177.5 866 66.3
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1177.5 866 65.8
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1174.8 873 66.2
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1174.1 866 65.9
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1173.7 865 65.4
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1172.1 862 66.8
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1168.7 863 66.3
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1162.9 866 66.1
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1151.3 823 67.9
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1133.2 864 64.1
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1099.3 855 63.3
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 0.0e+00 1084.7 832 66.9
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 5.7e-312 1074.7 626 80.7
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 5.8e-307 1057.4 691 73.4
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 6.7e-303 1043.9 860 59.4
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 1.1e-297 1026.5 861 59.3
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 3.3e-286 988.4 692 68.4
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 2.5e-281 972.2 864 53.7
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 2.6e-278 962.2 870 54.3
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 3.3e-278 961.8 860 55.0
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 1.0e-263 913.7 868 51.7
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 2.5e-209 733.0 751 48.9
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 5.3e-167 592.4 388 72.4
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 7.2e-148 528.9 475 56.8
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 9.5e-132 475.3 461 53.4
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 3.6e-115 420.2 361 61.2
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 3.2e-79 300.8 306 53.6
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 5.1e-69 266.9 204 62.7
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 1.4e-66 258.8 168 72.6
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 2.8e-59 234.6 175 67.4
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 7.5e-44 183.3 168 55.4
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 9.1e-42 176.4 198 49.0
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 3.8e-40 171.0 216 44.9
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 4.1e-34 151.0 149 49.7
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 7.5e-28 130.2 85 71.8
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.3e-24 119.4 194 40.7
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 1.3e-24 119.4 69 81.2
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 1.7e-24 119.0 87 66.7
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 1.9e-23 115.5 90 64.4
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 1.0e-21 109.8 73 69.9
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 1.3e-19 102.8 106 50.9
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 5.0e-16 90.9 295 24.7
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.2e-14 86.3 322 25.2
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 1.2e-14 86.3 326 24.8
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 2.1e-14 85.5 313 25.2
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 6.8e-13 80.5 331 23.6
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.2e-12 79.7 297 25.3
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 8.3e-11 73.6 304 23.4
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 1.4e-10 72.8 322 24.2
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 3.2e-10 71.6 239 24.3
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 7.0e-10 70.5 95 44.2
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.6e-09 69.3 314 23.2
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 2.0e-09 68.9 33 87.9
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 3.5e-09 68.2 289 25.6
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 1.0e-08 66.6 342 22.2
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 2.3e-08 65.5 302 26.8
SMO348G0088 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 8.6e-08 63.5 296 24.7
Cre02.g146650 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.1e-07 63.2 297 23.6
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 3.3e-07 61.6 177 28.2
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 4.3e-07 61.2 298 22.1
Pp3c6_25370 Physcomitrium patens HOM05D008676 ORTHO05D010936 9.5e-07 60.1 300 25.0
ATR0511G001 Amborella trichopoda HOM05D006378 ORTHO05D007959 1.6e-06 59.3 86 47.7
MCO10G276 Micromonas commoda HOM05D008676 ORTHO05D010936 6.2e-06 57.4 260 21.9
CBR_g37950 Chara braunii HOM05D000019 ORTHO05D000002 8.1e-06 57.0 162 25.9


User provided reference genes

Program Settings