Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1970.3 1098 100.0
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1959.5 1115 98.5
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 0.0e+00 1850.5 1119 94.2
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 0.0e+00 1748.8 1119 85.6
QL11p000475 Quercus lobata HOM05D003881 ORTHO05D004343 0.0e+00 1671.4 1220 79.8
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 0.0e+00 1536.2 1122 74.7
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 0.0e+00 1532.7 1124 78.4
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 0.0e+00 1521.1 1122 77.1
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 0.0e+00 1516.9 1087 74.8
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 0.0e+00 1513.8 1123 72.5
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 0.0e+00 1511.1 1124 72.5
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1507.7 1113 75.5
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 0.0e+00 1503.8 1110 73.8
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 0.0e+00 1500.0 1118 73.7
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1495.3 1132 74.2
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 0.0e+00 1495.3 1103 73.3
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1493.0 1086 76.5
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1492.2 1120 73.4
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 0.0e+00 1489.9 1107 73.5
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 0.0e+00 1484.9 1118 74.0
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1484.5 1124 74.0
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 0.0e+00 1483.8 1125 75.3
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 0.0e+00 1483.0 1123 75.2
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 0.0e+00 1480.7 1119 74.4
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1479.5 1115 73.1
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 0.0e+00 1478.8 1116 73.7
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 0.0e+00 1474.9 1123 74.4
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 0.0e+00 1473.8 1118 74.7
RcHm_v2.0_Chr2g0094531 Rosa chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1473.8 1125 75.7
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 0.0e+00 1473.0 1124 71.5
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1472.6 1160 70.9
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1472.2 1104 74.9
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 0.0e+00 1471.1 1107 72.9
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1468.0 1124 71.6
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1468.0 1124 71.6
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1466.8 1119 73.2
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1466.4 1120 70.9
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 0.0e+00 1463.4 1103 73.1
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 0.0e+00 1458.4 1121 72.1
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 0.0e+00 1456.0 1058 75.0
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 0.0e+00 1453.3 1118 72.2
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1451.8 1140 69.5
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1450.6 1119 72.2
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 0.0e+00 1446.4 1125 69.2
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1445.3 1125 71.9
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 0.0e+00 1437.6 1124 72.9
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 0.0e+00 1435.2 1127 72.8
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 0.0e+00 1417.9 1062 73.3
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 0.0e+00 1405.6 1140 67.9
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 0.0e+00 1405.2 1122 68.4
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 0.0e+00 1384.8 1116 68.4
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1382.5 1120 68.5
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 0.0e+00 1380.9 896 78.3
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 0.0e+00 1370.5 897 77.4
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1369.8 897 77.1
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1369.0 897 77.3
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 0.0e+00 1368.6 1113 67.9
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 0.0e+00 1354.7 1002 69.8
Cc06_g12030 Coffea canephora HOM05D003881 ORTHO05D004343 0.0e+00 1349.3 1130 70.1
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 0.0e+00 1336.6 1136 65.1
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1332.0 1104 68.1
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 0.0e+00 1331.6 1124 65.6
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1328.5 1126 66.7
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 0.0e+00 1324.7 1133 65.4
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 0.0e+00 1322.4 973 70.3
Actinidia29923 Actinidia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1319.3 1111 65.7
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 0.0e+00 1317.4 1119 66.9
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1315.8 1035 69.8
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1315.8 1104 67.1
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 0.0e+00 1313.5 1125 65.5
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1310.4 973 69.2
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 0.0e+00 1310.0 1062 66.4
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 0.0e+00 1309.7 973 68.4
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1308.9 1116 64.3
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 0.0e+00 1308.5 1118 65.9
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 0.0e+00 1300.4 1004 67.4
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 0.0e+00 1295.4 1056 66.0
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1293.9 897 73.9
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1289.6 973 68.3
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 0.0e+00 1289.6 973 68.3
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1288.5 973 68.2
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 0.0e+00 1288.5 973 68.2
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1279.6 1124 67.9
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1279.2 1137 64.0
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 0.0e+00 1274.2 1172 64.0
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 0.0e+00 1267.3 1142 62.9
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1253.8 957 67.7
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1250.3 1065 66.2
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1245.0 1124 62.5
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 0.0e+00 1232.2 1108 60.6
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1225.3 1236 57.4
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 0.0e+00 1207.2 1089 61.2
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1198.0 1069 61.4
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 0.0e+00 1193.7 924 67.7
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1187.6 1276 54.2
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 0.0e+00 1182.9 1117 62.4
Zm00001eb073540 Zea mays HOM05D003881 ORTHO05D004343 0.0e+00 1176.4 1093 61.0
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1162.9 901 65.9
Mapoly0010s0036 Marchantia polymorpha HOM05D003881 ORTHO05D004343 0.0e+00 1114.8 900 62.6
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 0.0e+00 1084.7 969 59.1
AagrBONN_evm.TU.Sc2ySwM_344.1648 Anthoceros agrestis HOM05D003881 ORTHO05D004343 9.1e-300 1033.9 1119 54.2
Solyc07g041510.3 Solanum lycopersicum HOM05D003881 ORTHO05D004343 8.8e-287 990.7 720 71.5
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 1.2e-286 990.3 718 71.6
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 2.6e-270 936.0 1121 52.0
Cpa.g.sc28.63 Carica papaya HOM05D003881 ORTHO05D004343 2.3e-266 922.9 660 71.4
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 3.3e-249 865.9 772 57.5
Peaxi162Scf00127g00019 Petunia axillaris HOM05D003881 ORTHO05D004343 1.7e-242 843.6 715 63.4
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 3.1e-239 832.8 627 68.3
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 2.9e-237 826.2 574 73.5
HPP92_007226 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.2e-188 663.3 598 58.7
TAR383G0300 Trochodendron aralioides HOM05D003881 ORTHO05D004343 1.2e-179 634.8 522 71.1
Os07g0476200 Oryza sativa ssp. japonica HOM05D003881 ORTHO05D004343 4.3e-140 503.4 465 63.7
CARHR103810 Cardamine hirsuta HOM05D003881 ORTHO05D004343 8.6e-133 479.2 346 71.7
Sopen07g021070 Solanum pennellii HOM05D003881 ORTHO05D004343 2.1e-118 431.4 407 65.8
Peaxi162Scf00127g00018 Petunia axillaris HOM05D003881 ORTHO05D004343 2.4e-114 417.9 406 63.3
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 1.4e-106 392.1 276 83.3
CBR_g74629 Chara braunii HOM05D003881 ORTHO05D004343 6.9e-106 389.8 355 55.2
Psat4g185720 Pisum sativum HOM05D003881 ORTHO05D004343 7.7e-89 333.2 243 72.4
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 2.9e-88 331.3 233 71.2
SEGI_36108 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.7e-86 324.7 478 43.9
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 3.9e-85 320.9 230 69.6
SHI23794 Sapria himalayana HOM05D003881 ORTHO05D004343 3.1e-74 284.6 350 48.0
MCO14G023 Micromonas commoda HOM05D003881 ORTHO05D004343 4.7e-70 270.8 1051 25.5
Cre03.g189605 Chlamydomonas reinhardtii HOM05D003881 ORTHO05D004343 1.6e-65 255.8 1039 24.3
ATR0684G009 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.3e-56 226.1 372 37.9
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 1.5e-52 212.6 105 96.2
Zm00001eb329800 Zea mays HOM05D003881 ORTHO05D004343 2.6e-52 211.8 192 55.7
MD15G1215900 Malus domestica HOM05D003881 ORTHO05D004343 7.2e-47 193.7 243 51.4
SEGI_33062 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 9.5e-47 193.4 164 59.1
CSS0024068 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 3.0e-45 188.3 99 87.9
Thhalv10002929m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 2.4e-42 178.7 198 47.0
HPP92_012481 Vanilla planifolia HOM05D003881 ORTHO05D004343 7.0e-42 177.2 149 61.7
ATR0193G031 Amborella trichopoda HOM05D003881 ORTHO05D004343 3.3e-39 168.3 108 75.9
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 5.6e-39 167.5 103 75.7
Psat1g224080 Pisum sativum HOM05D003881 ORTHO05D004343 2.8e-38 165.2 89 87.6
CBR_g74627 Chara braunii HOM05D003881 ORTHO05D004343 1.2e-36 159.8 228 38.6
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 7.5e-36 157.1 484 29.1
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 5.0e-32 144.4 150 55.3
vmacro22673 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 1.1e-31 143.3 302 40.7
Psat1g059560 Pisum sativum HOM05D003881 ORTHO05D004343 3.3e-31 141.7 150 54.7
ATR0193G014 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.2e-30 139.8 107 68.2
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 3.1e-29 135.2 86 81.4
Hma1.2p1_0528F.1_g173040 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 4.3e-23 114.8 108 58.3
Hma1.2p1_0980F.1_g243635 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 4.3e-23 114.8 108 58.3
Hma1.2p1_1385F.1_g279633 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 4.3e-23 114.8 108 58.3
ATR0684G059 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.2e-20 106.7 82 67.1
Hma1.2p1_0508F.1_g168780 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.7e-19 102.8 79 63.3
SEGI_35060 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 1.7e-19 102.8 125 44.8
Hma1.2p1_0430F.1_g151320 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.6e-17 96.3 61 75.4
SEGI_29160 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.7e-17 95.5 119 41.2
SEGI_15507 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.6e-17 94.7 79 58.2
SEGI_11752 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.0e-16 93.6 130 42.3
HPP92_006870 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.0e-16 93.6 115 49.6
SEGI_23032 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.3e-16 93.2 67 65.7
Actinidia38472 Actinidia chinensis HOM05D003881 ORTHO05D004343 3.0e-16 92.0 237 30.4
RcHm_v2.0_Chr5g0007121 Rosa chinensis HOM05D003881 ORTHO05D004343 1.1e-15 90.1 51 82.4
HPP92_028483 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.1e-15 90.1 61 67.2
HPP92_006853 Vanilla planifolia HOM05D003881 ORTHO05D004343 9.5e-15 87.0 61 67.2
TPR.G10985 Trifolium pratense HOM05D003881 ORTHO05D004343 1.2e-14 86.7 47 91.5
SEGI_26438 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.3e-11 76.6 47 76.6
HPP92_012555 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.9e-11 75.5 188 36.7
Psat6g098400 Pisum sativum HOM05D003881 ORTHO05D004343 8.4e-11 73.9 63 58.7
Rhsim03G0229000 Rhododendron simsii HOM05D003881 ORTHO05D004343 9.2e-10 70.5 65 58.5
PGSC0003DMG400019565 Solanum tuberosum HOM05D003881 ORTHO05D004343 2.1e-09 69.3 93 55.9
SEGI_39855 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 6.0e-09 67.8 51 60.8
CBR_g74625 Chara braunii HOM05D003881 ORTHO05D004343 7.8e-09 67.4 66 50.0
BolC7t41346H Brassica oleracea HOM05D003881 ORTHO05D004343 1.5e-07 63.2 57 56.1
Actinidia38474 Actinidia chinensis HOM05D003881 ORTHO05D004343 9.6e-07 60.5 53 71.7
C07p09280 Brassica napus HOM05D003881 ORTHO05D004343 3.6e-06 58.5 57 52.6
SEGI_25641 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 6.2e-06 57.8 38 71.1
SEGI_10645 Sequoiadendron giganteum HOM05D000563 ORTHO05D006573 8.1e-06 57.4 48 54.2


User provided reference genes

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