Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 5.2e-232 807.4 410 100.0
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 2.9e-166 589.0 432 74.3
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 8.4e-158 560.8 432 72.2
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 1.4e-149 533.5 433 67.2
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 9.3e-149 530.8 432 67.8
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 4.3e-138 495.4 424 62.7
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 3.1e-136 489.2 432 60.6
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 2.0e-135 486.5 432 60.6
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 2.2e-134 483.0 417 61.9
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 8.5e-134 481.1 429 60.1
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 1.2e-132 477.2 417 62.6
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 1.6e-132 476.9 423 58.9
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 3.3e-130 469.2 437 59.5
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 3.3e-130 469.2 416 58.7
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 5.7e-130 468.4 433 56.8
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 5.7e-130 468.4 432 58.3
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 9.7e-130 467.6 432 56.9
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 1.4e-128 463.8 438 57.5
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 5.3e-128 461.8 482 54.4
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 1.2e-127 460.7 433 57.3
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 1.5e-127 460.3 422 59.5
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 3.5e-127 459.1 417 59.0
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 1.7e-126 456.8 423 59.6
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 6.5e-126 454.9 415 56.4
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 1.1e-125 454.1 432 56.5
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 1.9e-125 453.4 422 57.1
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 1.4e-123 447.2 422 56.4
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 1.8e-123 446.8 421 58.9
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 3.0e-123 446.0 424 58.0
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 5.2e-123 445.3 433 56.6
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.1e-122 444.1 421 58.4
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 1.5e-122 443.7 433 56.4
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 2.0e-122 443.4 433 55.4
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 2.6e-122 443.0 433 55.4
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 2.6e-122 443.0 433 55.4
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 2.6e-122 443.0 432 58.1
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 5.3e-120 435.3 421 58.0
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 1.2e-119 434.1 437 54.7
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 2.0e-119 433.3 425 54.1
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 5.9e-119 431.8 433 54.7
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 7.7e-119 431.4 440 53.6
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 1.7e-118 430.3 426 55.6
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 2.2e-118 429.9 416 54.6
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 5.0e-118 428.7 433 54.0
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 8.0e-116 421.4 397 57.9
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.8e-115 420.2 397 57.7
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 4.0e-115 419.1 431 53.1
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 4.0e-115 419.1 435 54.0
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 8.8e-115 417.9 423 55.1
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 1.5e-114 417.2 429 50.8
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 4.4e-114 415.6 416 55.3
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 1.3e-113 414.1 423 53.7
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 8.3e-113 411.4 431 52.4
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 2.4e-112 409.8 430 52.8
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 1.6e-111 407.1 415 52.0
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 2.0e-111 406.8 430 50.7
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 3.5e-111 406.0 429 52.7
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 4.5e-111 405.6 411 52.3
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 4.5e-111 405.6 426 51.9
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 2.9e-110 402.9 415 51.8
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 5.0e-110 402.1 415 51.6
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 8.5e-110 401.4 415 52.5
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 8.5e-110 401.4 415 51.3
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 3.2e-109 399.4 416 51.7
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 4.2e-109 399.1 426 51.9
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 5.5e-109 398.7 417 52.0
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 5.5e-109 398.7 422 50.9
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 7.2e-109 398.3 416 51.4
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 9.4e-109 397.9 429 49.9
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 4.7e-108 395.6 416 51.2
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 4.7e-108 395.6 430 50.2
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 6.1e-108 395.2 419 49.9
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 2.3e-107 393.3 418 51.2
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 4.0e-107 392.5 417 51.1
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 4.0e-107 392.5 418 51.2
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 5.2e-107 392.1 456 49.3
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 8.8e-107 391.3 425 51.3
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 8.8e-107 391.3 420 51.0
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 2.0e-106 390.2 416 50.5
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 3.7e-105 386.0 411 50.6
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 6.3e-105 385.2 420 51.7
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 3.1e-104 382.9 385 52.5
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 4.1e-104 382.5 420 50.0
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 5.9e-103 378.6 387 53.0
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 5.9e-103 378.6 429 50.8
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 2.3e-102 376.7 424 48.8
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 3.8e-102 375.9 420 48.8
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 6.6e-102 375.2 420 48.6
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 6.1e-100 368.6 411 47.4
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 1.5e-98 364.0 425 48.5
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 9.2e-96 354.8 425 47.8
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 2.3e-94 350.1 428 44.2
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 8.6e-94 348.2 394 49.2
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 1.1e-93 347.8 398 49.0
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 1.6e-92 344.0 436 46.1
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 2.8e-92 343.2 402 46.8
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 1.4e-91 340.9 418 45.5
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.8e-91 340.5 370 49.7
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 8.9e-91 338.2 402 46.3
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 3.7e-89 332.8 414 45.9
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 1.7e-86 323.9 392 44.9
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 2.1e-84 317.0 409 45.2
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 1.5e-82 310.8 425 42.6
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 1.1e-77 294.7 409 41.6
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 7.1e-72 275.4 294 50.7
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 1.1e-69 268.1 396 37.6
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 3.0e-62 243.4 402 37.3
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 7.3e-61 238.8 358 39.1
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 1.6e-60 237.7 323 43.3
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 1.6e-60 237.7 323 43.3
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 1.5e-58 231.1 303 45.2
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 2.4e-56 223.8 337 40.7
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 1.0e-54 218.4 456 33.1
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 3.9e-54 216.5 248 47.6
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 1.7e-41 174.5 450 28.9
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 4.9e-41 172.9 478 27.4
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 1.3e-36 158.3 180 45.6
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 1.1e-32 145.2 373 27.9
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 6.7e-30 136.0 104 62.5
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.5e-29 134.8 116 52.6
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.5e-29 134.8 116 52.6
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 3.3e-29 133.7 316 32.3
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 6.3e-28 129.4 113 52.2
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 8.5e-25 119.0 161 41.6
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 3.2e-24 117.1 161 41.0
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 6.7e-22 109.4 173 41.0
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 2.0e-21 107.8 346 25.1
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 4.8e-20 103.2 89 56.2
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 3.1e-19 100.5 117 50.4
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 4.2e-16 90.1 159 36.5
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 2.1e-15 87.8 233 28.8
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 3.9e-14 83.6 276 28.3
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 2.0e-10 71.2 73 46.6
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 5.9e-10 69.7 69 50.7
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 1.0e-06 58.9 55 45.5
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 2.3e-06 57.8 45 60.0
GSVIVG01027373001 Vitis vinifera HOM05D005294 ORTHO05D006720 3.0e-06 57.4 39 64.1


User provided reference genes

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