Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25860 Corylus avellana HOM05D001384 ORTHO05D001215 2.0e-22 108.6 72 100.0
Thecc.09G095500 Theobroma cacao HOM05D001384 ORTHO05D001215 3.4e-14 81.3 72 62.5
MD02G1072000 Malus domestica HOM05D001384 ORTHO05D001215 1.0e-13 79.7 72 63.9
MD15G1201800 Malus domestica HOM05D001384 ORTHO05D001215 2.2e-13 78.6 72 63.9
Prupe.7G215700 Prunus persica HOM05D001384 ORTHO05D001215 8.5e-13 76.6 72 59.7
Glyma.01G004600 Glycine max HOM05D001384 ORTHO05D001215 4.6e-11 70.9 72 62.5
Glyma.07G127200 Glycine max HOM05D001384 ORTHO05D001215 6.1e-11 70.5 72 58.3
CiPaw.03G220500 Carya illinoinensis HOM05D001384 ORTHO05D001215 7.9e-11 70.1 73 63.0
TAR626G0551 Trochodendron aralioides HOM05D001384 ORTHO05D001215 1.0e-10 69.7 72 58.3
FAN23G2194 Fragaria x ananassa HOM05D001384 ORTHO05D001215 1.4e-10 69.3 73 56.2
Dinv37556 Davidia involucrata HOM05D001384 ORTHO05D001215 1.8e-10 68.9 71 53.5
CSS0002673 Camellia sinensis var. sinensis HOM05D001384 ORTHO05D001215 5.1e-10 67.4 72 73.6
CSS0049312 Camellia sinensis var. sinensis HOM05D001384 ORTHO05D001215 5.1e-10 67.4 72 73.6
arahy.Tifrunner.gnm1.ann1.3Z4R3A Arachis hypogaea HOM05D001384 ORTHO05D001215 6.7e-10 67.0 72 55.6
arahy.Tifrunner.gnm1.ann1.TI6HCL Arachis hypogaea HOM05D001384 ORTHO05D001215 6.7e-10 67.0 72 55.6
FvH4_1g06710 Fragaria vesca HOM05D001384 ORTHO05D001215 6.7e-10 67.0 73 54.8
FAN28G1521 Fragaria x ananassa HOM05D001384 ORTHO05D001215 6.7e-10 67.0 73 54.8
TAR375G0324 Trochodendron aralioides HOM05D001384 ORTHO05D001215 6.7e-10 67.0 71 52.1
Phvul.004G173101 Phaseolus vulgaris HOM05D001384 ORTHO05D001215 1.5e-09 65.9 72 55.6
RcHm_v2.0_Chr2g0092451 Rosa chinensis HOM05D001384 ORTHO05D001215 1.5e-09 65.9 73 53.4
Peaxi162Scf00498g00030 Petunia axillaris HOM05D001384 ORTHO05D001215 2.0e-09 65.5 72 58.3
GSVIVG01028741001 Vitis vinifera HOM05D001384 ORTHO05D001215 2.5e-09 65.1 71 54.9
Migut.J01071 Erythranthe guttata HOM05D001384 ORTHO05D001215 3.3e-09 64.7 72 58.3
CSS0028432 Camellia sinensis var. sinensis HOM05D001384 ORTHO05D001215 4.3e-09 64.3 71 70.4
COL.COLO4_18260 Corchorus olitorius HOM05D001384 ORTHO05D001215 5.7e-09 63.9 64 62.5
Nitab4.5_0000540g0040 Nicotiana tabacum HOM05D001384 ORTHO05D001215 5.7e-09 63.9 72 58.3
FAN06G1205 Fragaria x ananassa HOM05D001384 ORTHO05D001215 9.7e-09 63.2 63 57.1
Medtr6g090535 Medicago truncatula HOM05D001384 ORTHO05D001215 9.7e-09 63.2 72 52.8
Thecc.01G347500 Theobroma cacao HOM05D001384 ORTHO05D001215 9.7e-09 63.2 67 53.7
Actinidia27339 Actinidia chinensis HOM05D001384 ORTHO05D001215 1.3e-08 62.8 71 50.7
Gohir.D11G099700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.3e-08 62.8 67 52.2
Gorai.007G105900 Gossypium raimondii HOM05D001384 ORTHO05D001215 1.3e-08 62.8 67 52.2
QL02p031550 Quercus lobata HOM05D001384 ORTHO05D001215 1.3e-08 62.8 71 47.9
Gohir.A10G199650 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.7e-08 62.4 67 52.2
Lj2g0025499 Lotus japonicus HOM05D001384 ORTHO05D001215 1.7e-08 62.4 72 62.5
FAN06G2829 Fragaria x ananassa HOM05D001384 ORTHO05D001215 2.2e-08 62.0 63 57.1
GSVIVG01015262001 Vitis vinifera HOM05D001384 ORTHO05D001215 2.2e-08 62.0 73 68.5
COL.COLO4_06332 Corchorus olitorius HOM05D001384 ORTHO05D001215 2.8e-08 61.6 67 52.2
DCAR_012014 Daucus carota HOM05D001384 ORTHO05D001215 3.7e-08 61.2 72 66.7
RcHm_v2.0_Chr1g0380071 Rosa chinensis HOM05D001384 ORTHO05D001215 3.7e-08 61.2 63 54.0
CiPaw.04G153700 Carya illinoinensis HOM05D001384 ORTHO05D001215 4.8e-08 60.8 73 56.2
FvH4_7g30990 Fragaria vesca HOM05D001384 ORTHO05D001215 8.2e-08 60.1 63 54.0
Gohir.A10G068700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 8.2e-08 60.1 67 49.3
MBI06_g32761_MAGBIO Magnolia biondii HOM05D001384 ORTHO05D001215 8.2e-08 60.1 71 46.5
Prupe.2G306800 Prunus persica HOM05D001384 ORTHO05D001215 8.2e-08 60.1 65 55.4
MBI07_g20448_MAGBIO Magnolia biondii HOM05D001384 ORTHO05D001215 1.1e-07 59.7 71 46.5
Actinidia28493 Actinidia chinensis HOM05D001384 ORTHO05D001215 1.4e-07 59.3 62 53.2
AT5G24105 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 1.4e-07 59.3 68 47.1
Gohir.D06G068500 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.4e-07 59.3 74 56.8
Manes.14G018800 Manihot esculenta HOM05D001384 ORTHO05D001215 1.4e-07 59.3 72 51.4
Nitab4.5_0008261g0010 Nicotiana tabacum HOM05D001384 ORTHO05D001215 1.4e-07 59.3 71 50.7
Psat1g048920 Pisum sativum HOM05D001384 ORTHO05D001215 1.4e-07 59.3 72 62.5
GSVIVG01019489001 Vitis vinifera HOM05D001384 ORTHO05D001215 1.4e-07 59.3 63 52.4
Gohir.A12G110700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.8e-07 58.9 62 53.2
Gohir.D12G114000 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.8e-07 58.9 62 53.2
Gorai.010G080100 Gossypium raimondii HOM05D001384 ORTHO05D001215 1.8e-07 58.9 74 56.8
CSS0003232 Camellia sinensis var. sinensis HOM05D001384 ORTHO05D001215 2.4e-07 58.5 71 60.6
Duzib133G0751 Durio zibethinus HOM05D001384 ORTHO05D001215 2.4e-07 58.5 62 54.8
Hma1.2p1_0384F.1_g141070 Hydrangea macrophylla HOM05D001384 ORTHO05D001215 2.4e-07 58.5 72 50.0
Cfa003142 Carpinus fangiana HOM05D001384 ORTHO05D001215 3.1e-07 58.2 49 71.4
CiPaw.11G124600 Carya illinoinensis HOM05D001384 ORTHO05D001215 3.1e-07 58.2 72 50.0
TWI39G0811 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 3.1e-07 58.2 72 55.6
vmacro13148 Vaccinium macrocarpon HOM05D001384 ORTHO05D001215 3.1e-07 58.2 62 54.8
Carub.0006s2183 Capsella rubella HOM05D001384 ORTHO05D001215 4.1e-07 57.8 72 45.8
CsaV3_4G006390 Cucumis sativus L. HOM05D001384 ORTHO05D001215 4.1e-07 57.8 71 46.5
Duzib138G1328 Durio zibethinus HOM05D001384 ORTHO05D001215 4.1e-07 57.8 67 49.3
Gohir.A11G210500 Gossypium hirsutum HOM05D001384 ORTHO05D001215 4.1e-07 57.8 62 51.6
HanXRQChr13g0415891 Helianthus annuus HOM05D001384 ORTHO05D001215 4.1e-07 57.8 62 48.4
Lalb_Chr24g0393961 Lupinus albus HOM05D001384 ORTHO05D001215 4.1e-07 57.8 72 51.4
PGR042G2194 Punica granatum HOM05D001384 ORTHO05D001215 4.1e-07 57.8 72 54.2
Oeu030571.1 Olea europaea HOM05D001384 ORTHO05D001215 5.3e-07 57.4 69 47.8
AT3G61640 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 6.9e-07 57.0 67 49.3
MELO3C032818.2 Cucumis melo HOM05D001384 ORTHO05D001215 6.9e-07 57.0 71 46.5
Gohir.A06G069900 Gossypium hirsutum HOM05D001384 ORTHO05D001215 6.9e-07 57.0 72 54.2
HanXRQChr10g0319041 Helianthus annuus HOM05D001384 ORTHO05D001215 6.9e-07 57.0 72 52.8
Lalb_Chr22g0349831 Lupinus albus HOM05D001384 ORTHO05D001215 6.9e-07 57.0 72 52.8
THA.LOC104821373 Tarenaya hassleriana HOM05D001384 ORTHO05D001215 6.9e-07 57.0 72 41.7
AL8G27900 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 9.1e-07 56.6 72 44.4
BcaC03g14439 Brassica carinata HOM05D001384 ORTHO05D001215 9.1e-07 56.6 72 45.8
C02p18530 Brassica napus HOM05D001384 ORTHO05D001215 9.1e-07 56.6 72 45.8
BolC2t07993H Brassica oleracea HOM05D001384 ORTHO05D001215 9.1e-07 56.6 72 45.8
TAR636G2986 Trochodendron aralioides HOM05D001384 ORTHO05D001215 9.1e-07 56.6 71 56.3
HPP92_026774 Vanilla planifolia HOM05D001384 ORTHO05D001215 9.1e-07 56.6 67 59.7
BcaC04g23523 Brassica carinata HOM05D001384 ORTHO05D001215 1.2e-06 56.2 72 44.4
A09p06620 Brassica napus HOM05D001384 ORTHO05D001215 1.2e-06 56.2 72 44.4
C09p07390 Brassica napus HOM05D001384 ORTHO05D001215 1.2e-06 56.2 72 44.4
BolC9t53653H Brassica oleracea HOM05D001384 ORTHO05D001215 1.2e-06 56.2 72 44.4
BraA09t36309Z Brassica rapa HOM05D001384 ORTHO05D001215 1.2e-06 56.2 72 44.4
Haze_08680 Corylus avellana HOM05D001384 ORTHO05D001215 1.2e-06 56.2 73 49.3
Dinv43894 Davidia involucrata HOM05D001384 ORTHO05D001215 1.2e-06 56.2 67 47.8
Gorai.008G123500 Gossypium raimondii HOM05D001384 ORTHO05D001215 1.2e-06 56.2 62 51.6
TWI14G0223 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 1.2e-06 56.2 72 56.9
Carub.0005s2833 Capsella rubella HOM05D001384 ORTHO05D001215 1.5e-06 55.8 62 53.2
Cpa.g.sc3.48 Carica papaya HOM05D001384 ORTHO05D001215 1.5e-06 55.8 73 46.6
FAN10G2526 Fragaria x ananassa HOM05D001384 ORTHO05D001215 1.5e-06 55.8 63 63.5
FAN10G2635 Fragaria x ananassa HOM05D001384 ORTHO05D001215 1.5e-06 55.8 63 63.5
Psat7g027760 Pisum sativum HOM05D001384 ORTHO05D001215 1.5e-06 55.8 66 51.5
TWI81G0992 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 1.5e-06 55.8 73 47.9
Aa31LG1G27700 Aethionema arabicum HOM05D001384 ORTHO05D001215 2.0e-06 55.5 67 49.3
CiPaw.01G072100 Carya illinoinensis HOM05D001384 ORTHO05D001215 2.0e-06 55.5 64 50.0
Ca_17497_v3 Cicer arietinum L. HOM05D001384 ORTHO05D001215 2.0e-06 55.5 66 53.0
Thhalv10015233m.g Eutrema salsugineum HOM05D001384 ORTHO05D001215 2.0e-06 55.5 72 44.4
Nitab4.5_0003781g0080 Nicotiana tabacum HOM05D001384 ORTHO05D001215 2.0e-06 55.5 72 58.3
Peaxi162Scf01012g00121 Petunia axillaris HOM05D001384 ORTHO05D001215 2.0e-06 55.5 66 45.5
Cpa.g.sc194.9 Carica papaya HOM05D001384 ORTHO05D001215 2.6e-06 55.1 67 46.3
MBI01_g10310_MAGBIO Magnolia biondii HOM05D001384 ORTHO05D001215 2.6e-06 55.1 72 59.7
MD01G1214900 Malus domestica HOM05D001384 ORTHO05D001215 2.6e-06 55.1 70 55.7
Manes.06G156900 Manihot esculenta HOM05D001384 ORTHO05D001215 2.6e-06 55.1 72 45.8
Potri.014G094800 Populus trichocarpa HOM05D001384 ORTHO05D001215 2.6e-06 55.1 63 60.3
Solyc10g011730.3 Solanum lycopersicum HOM05D001384 ORTHO05D001215 2.6e-06 55.1 61 47.5
Thecc.03G192400 Theobroma cacao HOM05D001384 ORTHO05D001215 2.6e-06 55.1 72 41.7
BcaC01g06232 Brassica carinata HOM05D001384 ORTHO05D001215 3.4e-06 54.7 72 48.6
BcaC01g06233 Brassica carinata HOM05D001384 ORTHO05D001215 3.4e-06 54.7 72 48.6
BolC3t14192H Brassica oleracea HOM05D001384 ORTHO05D001215 3.4e-06 54.7 72 48.6
CDE02G0411 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 3.4e-06 54.7 71 46.5
Lsat_1_v5_gn_6_11901 Lactuca sativa HOM05D001384 ORTHO05D001215 3.4e-06 54.7 72 43.1
Lsat_1_v5_gn_7_38720 Lactuca sativa HOM05D001384 ORTHO05D001215 3.4e-06 54.7 66 47.0
Nn8g38978 Nelumbo nucifera HOM05D001384 ORTHO05D001215 3.4e-06 54.7 73 47.9
Nitab4.5_0000305g0110 Nicotiana tabacum HOM05D001384 ORTHO05D001215 3.4e-06 54.7 62 48.4
Sopen10g005520 Solanum pennellii HOM05D001384 ORTHO05D001215 3.4e-06 54.7 61 47.5
AL5G44040 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 4.5e-06 54.3 63 49.2
CDE08G0321 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 4.5e-06 54.3 71 39.4
Nitab4.5_0009232g0020 Nicotiana tabacum HOM05D001384 ORTHO05D001215 4.5e-06 54.3 62 48.4
PGR031G3192 Punica granatum HOM05D001384 ORTHO05D001215 4.5e-06 54.3 70 50.0
arahy.Tifrunner.gnm1.ann1.1BHK1H Arachis hypogaea HOM05D001384 ORTHO05D001215 5.9e-06 53.9 63 52.4
arahy.Tifrunner.gnm1.ann1.57RBBI Arachis hypogaea HOM05D001384 ORTHO05D001215 5.9e-06 53.9 63 50.8
Carub.0008s1343 Capsella rubella HOM05D001384 ORTHO05D001215 5.9e-06 53.9 72 43.1
ClCG07G014860 Citrullus lanatus HOM05D001384 ORTHO05D001215 5.9e-06 53.9 71 45.1
Gohir.A11G094700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 5.9e-06 53.9 67 58.2
HanXRQChr09g0238501 Helianthus annuus HOM05D001384 ORTHO05D001215 5.9e-06 53.9 72 45.8
CARHR141610 Cardamine hirsuta HOM05D001384 ORTHO05D001215 7.7e-06 53.5 67 44.8
Lsat_1_v5_gn_7_1901 Lactuca sativa HOM05D001384 ORTHO05D001215 7.7e-06 53.5 63 44.4
Nitab4.5_0000522g0080 Nicotiana tabacum HOM05D001384 ORTHO05D001215 7.7e-06 53.5 71 46.5
Potri.012G032000 Populus trichocarpa HOM05D001384 ORTHO05D001215 7.7e-06 53.5 73 46.6
PGSC0003DMG400019380 Solanum tuberosum HOM05D001384 ORTHO05D001215 7.7e-06 53.5 61 47.5


User provided reference genes

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