Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 0.0e+00 1376.3 758 100.0
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 1.8e-259 899.4 650 80.2
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 4.1e-251 871.7 650 78.6
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 4.9e-244 848.2 662 75.7
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 9.9e-229 797.3 656 72.3
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 5.3e-222 775.0 655 72.7
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 9.9e-221 770.8 658 70.8
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 2.4e-219 766.1 654 70.9
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 1.7e-217 760.0 646 70.7
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 7.3e-216 754.6 662 71.1
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 2.8e-215 752.7 661 71.3
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 1.4e-214 750.4 701 67.2
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 5.8e-213 745.0 655 69.5
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 3.2e-211 739.2 656 68.8
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 4.6e-210 735.3 656 68.3
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 1.8e-209 733.4 657 68.0
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 8.7e-209 731.1 651 69.0
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 4.3e-208 728.8 646 68.7
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 2.8e-207 726.1 740 62.6
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.4e-206 723.8 658 67.5
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 3.1e-206 722.6 651 67.9
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 3.1e-206 722.6 656 67.8
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 5.8e-205 718.4 656 66.9
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 5.8e-205 718.4 655 68.4
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 4.9e-204 715.3 657 67.9
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 5.5e-203 711.8 656 67.2
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.3e-201 707.2 655 66.7
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 6.3e-199 698.4 654 65.9
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.4e-198 696.4 659 65.9
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 4.5e-197 692.2 656 65.7
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 5.0e-196 688.7 553 74.9
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 6.5e-196 688.3 655 65.8
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 1.9e-195 686.8 658 65.5
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 2.5e-195 686.4 658 65.0
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.7e-194 682.9 673 65.8
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 6.1e-194 681.8 682 63.3
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 2.8e-191 672.9 660 64.2
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 3.8e-188 662.5 699 61.1
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 5.0e-188 662.1 559 72.1
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 5.0e-188 662.1 660 63.6
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 5.1e-185 652.1 657 62.9
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 6.7e-185 651.7 660 62.1
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 7.4e-184 648.3 660 62.0
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 4.5e-181 639.0 657 60.7
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 1.1e-179 634.4 649 61.0
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 2.5e-179 633.3 665 61.2
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 2.7e-178 629.8 651 62.5
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 7.9e-178 628.2 653 60.6
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 3.9e-177 625.9 651 61.8
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 4.4e-176 622.5 702 58.8
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 5.7e-176 622.1 667 61.0
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 7.4e-176 621.7 657 61.0
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 9.7e-176 621.3 665 61.4
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 3.7e-175 619.4 684 59.4
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 6.3e-175 618.6 702 58.5
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 6.3e-175 618.6 672 61.2
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 3.1e-174 616.3 698 57.6
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 9.1e-174 614.8 698 57.6
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 2.6e-173 613.2 651 59.0
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 3.5e-173 612.8 655 58.8
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 2.9e-172 609.8 661 59.5
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 6.5e-172 608.6 646 61.1
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 1.6e-170 604.0 654 59.3
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 3.6e-170 602.8 663 59.6
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 8.0e-170 601.7 648 60.6
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 5.2e-169 599.0 696 57.6
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 3.3e-168 596.3 710 57.2
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 5.7e-168 595.5 654 59.5
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 1.3e-167 594.3 663 59.0
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 2.8e-167 593.2 661 58.7
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.4e-166 590.9 653 58.7
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 1.6e-165 587.4 664 58.1
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.0e-164 584.7 673 59.6
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.2e-164 583.6 673 59.4
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 6.5e-164 582.0 668 57.5
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 8.5e-164 581.6 653 58.0
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 3.2e-163 579.7 673 59.1
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 7.2e-163 578.6 687 57.1
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 2.7e-162 576.6 651 58.2
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 4.0e-161 572.8 654 58.1
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 3.4e-160 569.7 683 58.1
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 1.3e-159 567.8 680 56.2
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 7.0e-158 562.0 728 53.7
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 3.5e-157 559.7 622 58.5
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 1.9e-155 553.9 657 56.0
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 8.0e-154 548.5 671 55.3
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 1.8e-153 547.4 662 54.7
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 3.0e-153 546.6 704 52.1
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 3.0e-153 546.6 656 56.2
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 2.6e-152 543.5 739 51.7
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 4.9e-151 539.3 681 54.0
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 8.3e-151 538.5 661 55.8
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 1.4e-150 537.7 686 55.0
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.9e-147 527.3 683 55.6
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 3.3e-147 526.6 705 52.8
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 5.6e-147 525.8 360 82.2
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 1.5e-144 517.7 655 52.7
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 5.7e-144 515.8 659 53.4
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 7.5e-144 515.4 654 52.1
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 2.9e-143 513.5 408 70.8
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 2.7e-141 506.9 538 60.2
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 1.4e-137 494.6 676 49.9
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 5.2e-137 492.7 675 51.6
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 2.6e-136 490.3 671 52.3
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 1.7e-135 487.6 681 52.6
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 7.0e-134 482.3 653 51.1
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 2.0e-133 480.7 670 51.2
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 1.9e-131 474.2 705 49.4
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 2.1e-117 427.6 383 67.4
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 3.6e-114 416.8 503 58.1
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 3.1e-113 413.7 503 57.9
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 5.1e-108 396.4 440 58.4
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 2.7e-93 347.4 442 54.1
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 4.8e-90 336.7 690 42.3
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 6.0e-85 319.7 452 50.2
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 1.1e-81 308.9 391 53.2
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.5e-80 305.1 236 74.6
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 1.4e-78 298.5 203 81.8
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 3.0e-68 264.2 175 83.4
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 2.4e-65 254.6 400 46.0
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.2e-61 242.3 163 83.4
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 4.2e-54 217.2 147 81.6
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 4.2e-54 217.2 147 81.6
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 6.1e-53 213.4 409 43.3
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.8e-52 211.8 319 48.6
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 3.0e-52 211.1 602 32.6
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.4e-49 202.2 165 70.9
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 1.0e-44 186.0 116 83.6
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 2.8e-37 161.4 400 35.5
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 4.0e-36 157.5 213 52.6
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 6.3e-34 150.2 243 44.9
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 5.6e-30 137.1 91 86.8
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 1.2e-27 129.4 220 46.8
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 7.8e-24 116.7 297 36.7
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.1e-22 112.8 75 86.7
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.1e-22 112.8 75 86.7
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.1e-22 112.8 75 86.7
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 2.5e-22 111.7 92 73.9
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 7.3e-22 110.2 77 81.8
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 3.1e-20 104.8 65 80.0
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 8.9e-20 103.2 75 84.0
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 3.0e-15 88.2 59 78.0
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 4.4e-11 74.3 351 28.2
CDE02G3418 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 2.2e-10 72.0 318 30.5
ATR0693G380 Amborella trichopoda HOM05D004485 ORTHO05D005485 8.3e-10 70.1 70 57.1
C07p01440 Brassica napus HOM05D004485 ORTHO05D005485 3.2e-09 68.2 127 44.9
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 1.2e-08 66.2 45 68.9
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 4.6e-08 64.3 50 74.0
arahy.Tifrunner.gnm1.ann1.G8QSGL Arachis hypogaea HOM05D004485 ORTHO05D005485 1.5e-06 59.3 66 56.1
BraA07t27870Z Brassica rapa HOM05D004485 ORTHO05D005485 1.5e-06 59.3 64 60.9
Ah.14g083320 Amaranthus hybridus HOM05D004485 ORTHO05D005485 7.3e-06 57.0 38 76.3
CARHR266410 Cardamine hirsuta HOM05D004485 ORTHO05D005485 9.5e-06 56.6 124 41.9


User provided reference genes

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