Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25754 Corylus avellana HOM05D004541 ORTHO05D006163 0.0e+00 1778.1 902 100.0
CiPaw.03G231000 Carya illinoinensis HOM05D004541 ORTHO05D006163 0.0e+00 1442.6 1033 72.7
QL02p040000 Quercus lobata HOM05D004541 ORTHO05D006163 0.0e+00 1401.3 1035 71.4
Prupe.7G232300 Prunus persica HOM05D004541 ORTHO05D006163 0.0e+00 1352.8 1017 68.7
Duzib168G0462 Durio zibethinus HOM05D004541 ORTHO05D006163 0.0e+00 1352.0 986 69.6
Manes.16G115100 Manihot esculenta HOM05D004541 ORTHO05D006163 0.0e+00 1349.3 1027 67.3
Dinv41612 Davidia involucrata HOM05D004541 ORTHO05D006163 0.0e+00 1337.8 1042 66.4
Eucgr.C03820 Eucalyptus grandis HOM05D004541 ORTHO05D006163 0.0e+00 1331.6 1027 67.0
COL.COLO4_34849 Corchorus olitorius HOM05D004541 ORTHO05D006163 0.0e+00 1318.9 1026 66.6
Duzib187G1831 Durio zibethinus HOM05D004541 ORTHO05D006163 0.0e+00 1318.9 1013 67.0
CANSAT56G2738 Cannabis sativa HOM05D004541 ORTHO05D006163 0.0e+00 1316.2 1027 65.8
ClCG06G008600 Citrullus lanatus HOM05D004541 ORTHO05D006163 0.0e+00 1315.8 1021 67.1
CANSAT56G4378 Cannabis sativa HOM05D004541 ORTHO05D006163 0.0e+00 1313.9 1027 65.7
MD15G1183900 Malus domestica HOM05D004541 ORTHO05D006163 0.0e+00 1313.1 1026 66.6
Actinidia07413 Actinidia chinensis HOM05D004541 ORTHO05D006163 0.0e+00 1312.4 1035 65.2
TAR383G1084 Trochodendron aralioides HOM05D004541 ORTHO05D006163 0.0e+00 1310.4 1036 65.5
CSS0034093 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 0.0e+00 1308.5 1034 65.3
MELO3C025349.2 Cucumis melo HOM05D004541 ORTHO05D006163 0.0e+00 1308.1 1032 66.2
RcHm_v2.0_Chr2g0090281 Rosa chinensis HOM05D004541 ORTHO05D006163 0.0e+00 1307.0 998 66.4
Gohir.A05G023600 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1298.5 1028 65.1
Atru.chr7.1362 Acer truncatum HOM05D004541 ORTHO05D006163 0.0e+00 1297.7 1025 65.4
Gorai.009G025200 Gossypium raimondii HOM05D004541 ORTHO05D006163 0.0e+00 1296.6 1028 65.4
Gorai.004G280300 Gossypium raimondii HOM05D004541 ORTHO05D006163 0.0e+00 1296.2 1028 65.7
Ca_20226_v3 Cicer arietinum L. HOM05D004541 ORTHO05D006163 0.0e+00 1294.6 1016 66.0
FAN23G1653 Fragaria x ananassa HOM05D004541 ORTHO05D006163 0.0e+00 1290.4 1027 65.4
vmacro06222 Vaccinium macrocarpon HOM05D004541 ORTHO05D006163 0.0e+00 1288.5 1028 65.3
Lalb_Chr09g0331191 Lupinus albus HOM05D004541 ORTHO05D006163 0.0e+00 1284.6 1031 64.6
Potri.018G081400 Populus trichocarpa HOM05D004541 ORTHO05D006163 0.0e+00 1283.1 1004 66.3
CSS0021602 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 0.0e+00 1276.9 1003 65.0
TWI34G1287 Tripterygium wilfordii HOM05D004541 ORTHO05D006163 0.0e+00 1276.2 1017 64.2
Ciclev10007326m.g Citrus clementina HOM05D004541 ORTHO05D006163 0.0e+00 1275.4 1027 63.8
Cpa.g.sc23.98 Carica papaya HOM05D004541 ORTHO05D006163 0.0e+00 1273.5 1025 64.4
Sed0019002 Sechium edule HOM05D004541 ORTHO05D006163 0.0e+00 1273.1 993 66.5
Glyma.07G085500 Glycine max HOM05D004541 ORTHO05D006163 0.0e+00 1271.9 1019 66.0
Phvul.004G164500 Phaseolus vulgaris HOM05D004541 ORTHO05D006163 0.0e+00 1271.9 1018 64.7
PGR102G1372 Punica granatum HOM05D004541 ORTHO05D006163 0.0e+00 1268.4 1026 63.4
FAN19G1993 Fragaria x ananassa HOM05D004541 ORTHO05D006163 0.0e+00 1266.5 998 65.8
Lj2g0016785 Lotus japonicus HOM05D004541 ORTHO05D006163 0.0e+00 1260.4 999 65.7
Psat1g043400 Pisum sativum HOM05D004541 ORTHO05D006163 0.0e+00 1259.2 1017 65.0
Gohir.D05G025100 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1254.2 1028 64.0
Sabra18G0068500 Salix brachista HOM05D004541 ORTHO05D006163 0.0e+00 1252.7 963 66.5
Medtr6g087520 Medicago truncatula HOM05D004541 ORTHO05D006163 0.0e+00 1251.1 1020 64.6
Lj7A652G69 Lonicera japonica HOM05D004541 ORTHO05D006163 0.0e+00 1250.3 982 64.6
TPR.G10041 Trifolium pratense HOM05D004541 ORTHO05D006163 0.0e+00 1250.0 1022 64.7
Aqoxy7G01635 Aquilegia oxysepala HOM05D004541 ORTHO05D006163 0.0e+00 1245.3 1010 64.9
VMungo0464G1118 Vigna mungo HOM05D004541 ORTHO05D006163 0.0e+00 1243.8 1036 62.6
THA.LOC104804980 Tarenaya hassleriana HOM05D004541 ORTHO05D006163 0.0e+00 1239.6 1014 63.1
MD02G1045500 Malus domestica HOM05D004541 ORTHO05D006163 0.0e+00 1238.4 952 66.3
Cc06_g09760 Coffea canephora HOM05D004541 ORTHO05D006163 0.0e+00 1234.2 995 62.6
CAN.G608.21 Capsicum annuum HOM05D004541 ORTHO05D006163 0.0e+00 1232.6 999 63.4
Thhalv10012541m.g Eutrema salsugineum HOM05D004541 ORTHO05D006163 0.0e+00 1232.6 1020 62.4
Solyc09g007300.3 Solanum lycopersicum HOM05D004541 ORTHO05D006163 0.0e+00 1229.2 999 63.5
AT5G19660 Arabidopsis thaliana HOM05D004541 ORTHO05D006163 0.0e+00 1226.8 1027 61.3
Carub.0006s1801 Capsella rubella HOM05D004541 ORTHO05D006163 0.0e+00 1226.8 1027 61.1
Sp6g24730 Schrenkiella parvula HOM05D004541 ORTHO05D006163 0.0e+00 1226.5 1014 62.2
AL6G31170 Arabidopsis lyrata HOM05D004541 ORTHO05D006163 0.0e+00 1224.2 1018 61.6
Rhsim03G0241000 Rhododendron simsii HOM05D004541 ORTHO05D006163 0.0e+00 1222.6 1051 61.6
PSO210G2419 Papaver somniferum HOM05D004541 ORTHO05D006163 0.0e+00 1221.8 1001 62.4
Peaxi162Scf00005g04811 Petunia axillaris HOM05D004541 ORTHO05D006163 0.0e+00 1221.5 965 65.3
C03p11140 Brassica napus HOM05D004541 ORTHO05D006163 0.0e+00 1219.9 991 62.6
Hund26211 Selenicereus undatus HOM05D004541 ORTHO05D006163 0.0e+00 1216.8 1023 61.3
Oeu018244.1 Olea europaea HOM05D004541 ORTHO05D006163 0.0e+00 1216.4 994 62.4
BolC3t13584H Brassica oleracea HOM05D004541 ORTHO05D006163 0.0e+00 1215.3 991 62.3
ECA234G1988 Erigeron canadensis HOM05D004541 ORTHO05D006163 0.0e+00 1214.5 1010 61.1
A03p09570 Brassica napus HOM05D004541 ORTHO05D006163 0.0e+00 1214.1 991 62.5
Aa31LG3G3200 Aethionema arabicum HOM05D004541 ORTHO05D006163 0.0e+00 1213.4 1014 61.6
HanXRQChr10g0318611 Helianthus annuus HOM05D004541 ORTHO05D006163 0.0e+00 1211.8 1013 61.0
PSO210G5975 Papaver somniferum HOM05D004541 ORTHO05D006163 0.0e+00 1208.4 985 62.2
BraA03t10274Z Brassica rapa HOM05D004541 ORTHO05D006163 0.0e+00 1203.3 1014 60.8
unitig_8.g3279 Utricularia gibba HOM05D004541 ORTHO05D006163 0.0e+00 1199.1 1001 60.9
Lsat_1_v5_gn_5_103081 Lactuca sativa HOM05D004541 ORTHO05D006163 0.0e+00 1198.3 1038 61.0
FAN26G2455 Fragaria x ananassa HOM05D004541 ORTHO05D006163 0.0e+00 1198.0 977 64.2
EL10Ac8g18481 Beta vulgaris HOM05D004541 ORTHO05D006163 0.0e+00 1191.4 993 61.4
Migut.J01157 Erythranthe guttata HOM05D004541 ORTHO05D006163 0.0e+00 1189.5 1006 60.6
DCAR_024689 Daucus carota HOM05D004541 ORTHO05D006163 0.0e+00 1189.1 1004 61.4
MBI01_g28040_MAGBIO Magnolia biondii HOM05D004541 ORTHO05D006163 0.0e+00 1188.3 1003 61.3
Gohir.D05G025033 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1180.6 1020 61.6
Sc18g0001290 Simmondsia chinensis HOM05D004541 ORTHO05D006163 0.0e+00 1175.2 980 61.2
GSVIVG01015382001 Vitis vinifera HOM05D004541 ORTHO05D006163 0.0e+00 1162.5 859 67.9
Dinv36641 Davidia involucrata HOM05D004541 ORTHO05D006163 0.0e+00 1161.0 951 63.3
Thecc.09G109100 Theobroma cacao HOM05D004541 ORTHO05D006163 0.0e+00 1159.1 655 85.2
SHI02736 Sapria himalayana HOM05D004541 ORTHO05D006163 0.0e+00 1145.6 1023 58.3
VMungo0464G1847 Vigna mungo HOM05D004541 ORTHO05D006163 0.0e+00 1130.5 1035 58.2
FvH4_1g04670 Fragaria vesca HOM05D004541 ORTHO05D006163 0.0e+00 1129.4 655 82.4
Gohir.A08G241500 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1122.1 655 82.9
CsaV3_1G024300 Cucumis sativus L. HOM05D004541 ORTHO05D006163 0.0e+00 1121.3 655 82.1
SGA_v2.0_scaffold17G08177 Striga asiatica HOM05D004541 ORTHO05D006163 0.0e+00 1121.3 990 59.6
Nitab4.5_0000754g0130 Nicotiana tabacum HOM05D004541 ORTHO05D006163 0.0e+00 1114.0 986 58.4
Glyma.09G191400 Glycine max HOM05D004541 ORTHO05D006163 0.0e+00 1111.3 656 81.6
Gohir.D08G262300 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1108.6 655 83.1
CDE05G1732 Ceratophyllum demersum HOM05D004541 ORTHO05D006163 0.0e+00 1088.9 996 56.8
AUR62021490 Chenopodium quinoa HOM05D004541 ORTHO05D006163 0.0e+00 1088.9 940 60.9
ATR0315G070 Amborella trichopoda HOM05D004541 ORTHO05D006163 0.0e+00 1086.6 997 56.7
AUR62010981 Chenopodium quinoa HOM05D004541 ORTHO05D006163 0.0e+00 1078.9 859 63.6
Nitab4.5_0007565g0030 Nicotiana tabacum HOM05D004541 ORTHO05D006163 0.0e+00 1078.2 654 80.0
Sopen00g009260 Solanum pennellii HOM05D004541 ORTHO05D006163 0.0e+00 1077.0 646 80.5
Nn8g39153 Nelumbo nucifera HOM05D004541 ORTHO05D006163 3.1e-311 1071.6 883 62.1
CARHR193250 Cardamine hirsuta HOM05D004541 ORTHO05D006163 1.8e-309 1065.8 653 77.9
BcaB01g04837 Brassica carinata HOM05D004541 ORTHO05D006163 3.5e-305 1051.6 851 63.1
Lsat_1_v5_gn_8_105101 Lactuca sativa HOM05D004541 ORTHO05D006163 9.4e-303 1043.5 979 55.2
HPP92_003938 Vanilla planifolia HOM05D004541 ORTHO05D006163 5.2e-301 1037.7 913 57.8
Ah.14g082120 Amaranthus hybridus HOM05D004541 ORTHO05D006163 8.3e-299 1030.4 655 76.6
Nitab4.5_0001142g0040 Nicotiana tabacum HOM05D004541 ORTHO05D006163 2.9e-288 995.3 605 79.7
Os06g0163500 Oryza sativa ssp. japonica HOM05D004541 ORTHO05D006163 1.6e-262 909.8 666 65.9
Mapoly0155s0018 Marchantia polymorpha HOM05D004541 ORTHO05D006163 2.7e-257 892.5 986 48.7
CSS0043571 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 4.6e-257 891.7 657 68.6
CAN.G933.11 Capsicum annuum HOM05D004541 ORTHO05D006163 4.7e-254 881.7 654 67.1
SEGI_28317 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 3.1e-245 852.4 569 71.2
SMO347G0168 Selaginella moellendorffii HOM05D004541 ORTHO05D006163 1.2e-244 850.5 911 49.4
Nitab4.5_0006929g0020 Nicotiana tabacum HOM05D004541 ORTHO05D006163 2.4e-242 842.8 883 51.8
Pp3c3_30280 Physcomitrium patens HOM05D004541 ORTHO05D006163 2.3e-240 836.3 992 46.8
Zm00001eb375700 Zea mays HOM05D004541 ORTHO05D006163 3.9e-232 808.9 582 65.6
AagrBONN_evm.TU.Sc2ySwM_344.4490 Anthoceros agrestis HOM05D004541 ORTHO05D006163 4.6e-217 758.8 777 51.2
SEGI_41546 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 3.8e-203 712.6 702 54.4
Medtr6g086780 Medicago truncatula HOM05D004541 ORTHO05D006163 5.5e-186 655.6 491 67.8
PGSC0003DMG400017594 Solanum tuberosum HOM05D004541 ORTHO05D006163 3.4e-175 619.8 781 46.2
CAN.G268.4 Capsicum annuum HOM05D004541 ORTHO05D006163 3.9e-163 579.7 448 67.2
MCO08G100 Micromonas commoda HOM05D004541 ORTHO05D006163 4.9e-158 562.8 591 49.1
Cre14.g628800 Chlamydomonas reinhardtii HOM05D004541 ORTHO05D006163 5.6e-154 549.3 484 53.7
PRCOL_00005929 Prasinoderma coloniale HOM05D004541 ORTHO05D006163 1.5e-151 541.2 779 38.9
Haze_25735 Corylus avellana HOM05D004541 ORTHO05D006163 2.0e-95 354.8 221 93.2
SGA_v2.0_scaffold176G39378 Striga asiatica HOM05D004541 ORTHO05D006163 1.6e-60 238.8 210 57.6
Ah.14g082140 Amaranthus hybridus HOM05D004541 ORTHO05D006163 1.9e-53 215.3 192 58.3
MBI04_g39576_MAGBIO Magnolia biondii HOM05D004541 ORTHO05D006163 3.2e-48 198.0 123 78.9
BolC9t58517H Brassica oleracea HOM05D004541 ORTHO05D006163 6.6e-46 190.3 144 63.9
CBR_g30877 Chara braunii HOM05D004541 ORTHO05D000002 6.6e-46 190.3 184 51.1
Nitab4.5_0000754g0080 Nicotiana tabacum HOM05D004541 ORTHO05D006163 1.4e-43 182.6 146 63.0
C09p56520 Brassica napus HOM05D004541 ORTHO05D006163 1.9e-40 172.2 130 64.6
BcaC04g19361 Brassica carinata HOM05D002433 ORTHO05D003234 1.9e-37 162.2 126 62.7
CBR_g30889 Chara braunii HOM05D001523 ORTHO05D000184 2.2e-33 148.7 142 51.4
CAN.G933.10 Capsicum annuum HOM05D004541 ORTHO05D006163 1.2e-31 142.9 150 47.3
Sopen00g011810 Solanum pennellii HOM05D004541 ORTHO05D006163 5.1e-30 137.5 142 50.7
SEGI_08862 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 7.3e-29 133.7 226 36.7
Gorai.006G096000 Gossypium raimondii HOM05D004541 ORTHO05D006163 2.8e-28 131.7 290 35.5
CBR_g30873 Chara braunii HOM05D004541 ORTHO05D000800 2.6e-26 125.2 228 34.6
Gohir.A12G025200 Gossypium hirsutum HOM05D004541 ORTHO05D006163 1.4e-24 119.4 280 34.6
BcaB01g04836 Brassica carinata HOM05D004541 ORTHO05D006163 3.2e-24 118.2 107 56.1
Actinidia32680 Actinidia chinensis HOM05D004541 ORTHO05D006163 1.0e-22 113.2 76 73.7
Gohir.A06G119402 Gossypium hirsutum HOM05D004541 ORTHO05D006163 1.7e-22 112.5 280 33.6
Gohir.D09G033000 Gossypium hirsutum HOM05D004541 ORTHO05D006163 1.7e-22 112.5 280 33.6
Gohir.A10G147200 Gossypium hirsutum HOM05D004541 ORTHO05D006163 6.6e-22 110.5 280 33.2
Gohir.A08G250201 Gossypium hirsutum HOM05D004541 ORTHO05D006163 8.7e-22 110.2 280 33.2
Gohir.D04G083366 Gossypium hirsutum HOM05D004541 ORTHO05D006163 4.7e-20 104.4 274 32.8
Sopen00g009180 Solanum pennellii HOM05D004541 ORTHO05D006163 5.1e-14 84.3 48 79.2
Aa31LG3G3160 Aethionema arabicum HOM05D004541 ORTHO05D058835 5.3e-11 74.3 163 35.6
Gohir.D07G157100 Gossypium hirsutum HOM05D004541 ORTHO05D006163 9.0e-11 73.6 48 81.2
CBR_g30886 Chara braunii HOM05D000019 ORTHO05D000353 2.9e-09 68.6 34 79.4
A10p20060 Brassica napus HOM05D004541 ORTHO05D006163 1.6e-07 62.8 74 48.6


User provided reference genes

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