Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25737 Corylus avellana HOM05D004541 ORTHO05D006163 7.7e-91 337.0 160 100.0
QL02p040000 Quercus lobata HOM05D004541 ORTHO05D006163 4.7e-56 221.5 200 60.5
Gohir.D05G025033 Gossypium hirsutum HOM05D004541 ORTHO05D006163 8.1e-56 220.7 194 61.9
CiPaw.03G231000 Carya illinoinensis HOM05D004541 ORTHO05D006163 1.4e-55 219.9 200 59.5
Dinv36641 Davidia involucrata HOM05D004541 ORTHO05D006163 3.1e-55 218.8 200 59.0
COL.COLO4_34849 Corchorus olitorius HOM05D004541 ORTHO05D006163 4.0e-55 218.4 200 60.0
Gohir.A06G119402 Gossypium hirsutum HOM05D004541 ORTHO05D006163 4.0e-55 218.4 200 60.0
Gohir.A08G250201 Gossypium hirsutum HOM05D004541 ORTHO05D006163 4.0e-55 218.4 200 60.0
Gohir.D04G083366 Gossypium hirsutum HOM05D004541 ORTHO05D006163 4.0e-55 218.4 200 60.0
Gohir.D05G025100 Gossypium hirsutum HOM05D004541 ORTHO05D006163 4.0e-55 218.4 200 60.0
Gohir.D07G157100 Gossypium hirsutum HOM05D004541 ORTHO05D006163 4.0e-55 218.4 200 60.0
Gorai.004G280300 Gossypium raimondii HOM05D004541 ORTHO05D006163 4.0e-55 218.4 200 60.0
Gorai.006G096000 Gossypium raimondii HOM05D004541 ORTHO05D006163 4.0e-55 218.4 200 60.0
Gorai.009G025200 Gossypium raimondii HOM05D004541 ORTHO05D006163 4.0e-55 218.4 200 60.0
Eucgr.C03820 Eucalyptus grandis HOM05D004541 ORTHO05D006163 5.2e-55 218.0 200 60.0
Gohir.A05G023600 Gossypium hirsutum HOM05D004541 ORTHO05D006163 5.2e-55 218.0 200 59.5
Lj7A652G69 Lonicera japonica HOM05D004541 ORTHO05D006163 8.9e-55 217.2 200 59.0
Atru.chr7.1362 Acer truncatum HOM05D004541 ORTHO05D006163 1.2e-54 216.9 200 58.5
Gohir.A12G025200 Gossypium hirsutum HOM05D004541 ORTHO05D006163 1.2e-54 216.9 200 59.5
Gohir.D09G033000 Gossypium hirsutum HOM05D004541 ORTHO05D006163 1.2e-54 216.9 200 59.5
RcHm_v2.0_Chr2g0090281 Rosa chinensis HOM05D004541 ORTHO05D006163 1.5e-54 216.5 200 59.0
TAR383G1084 Trochodendron aralioides HOM05D004541 ORTHO05D006163 1.5e-54 216.5 200 59.0
vmacro06222 Vaccinium macrocarpon HOM05D004541 ORTHO05D006163 1.5e-54 216.5 200 59.0
Aqoxy7G01635 Aquilegia oxysepala HOM05D004541 ORTHO05D006163 2.0e-54 216.1 200 58.5
CSS0021602 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 2.0e-54 216.1 200 58.5
CSS0034093 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 2.0e-54 216.1 200 58.5
Ciclev10007326m.g Citrus clementina HOM05D004541 ORTHO05D006163 2.0e-54 216.1 200 58.0
Duzib187G1831 Durio zibethinus HOM05D004541 ORTHO05D006163 2.0e-54 216.1 200 59.5
Migut.J01157 Erythranthe guttata HOM05D004541 ORTHO05D006163 2.0e-54 216.1 200 58.5
Oeu018244.1 Olea europaea HOM05D004541 ORTHO05D006163 2.0e-54 216.1 200 58.5
ClCG06G008600 Citrullus lanatus HOM05D004541 ORTHO05D006163 2.6e-54 215.7 200 58.0
MELO3C025349.2 Cucumis melo HOM05D004541 ORTHO05D006163 2.6e-54 215.7 200 58.0
Prupe.7G232300 Prunus persica HOM05D004541 ORTHO05D006163 2.6e-54 215.7 200 59.0
Sed0019002 Sechium edule HOM05D004541 ORTHO05D006163 2.6e-54 215.7 200 58.0
Ca_20226_v3 Cicer arietinum L. HOM05D004541 ORTHO05D006163 3.4e-54 215.3 200 58.0
DCAR_024689 Daucus carota HOM05D004541 ORTHO05D006163 3.4e-54 215.3 200 58.5
Glyma.07G085500 Glycine max HOM05D004541 ORTHO05D006163 3.4e-54 215.3 200 58.0
Gohir.A10G147200 Gossypium hirsutum HOM05D004541 ORTHO05D006163 3.4e-54 215.3 200 59.5
MD02G1045500 Malus domestica HOM05D004541 ORTHO05D006163 3.4e-54 215.3 200 58.5
Medtr6g087520 Medicago truncatula HOM05D004541 ORTHO05D006163 3.4e-54 215.3 200 58.0
TPR.G10041 Trifolium pratense HOM05D004541 ORTHO05D006163 3.4e-54 215.3 200 58.0
Cc06_g09760 Coffea canephora HOM05D004541 ORTHO05D006163 4.4e-54 214.9 200 57.5
Dinv41612 Davidia involucrata HOM05D004541 ORTHO05D006163 4.4e-54 214.9 200 58.5
FAN23G1653 Fragaria x ananassa HOM05D004541 ORTHO05D006163 4.4e-54 214.9 200 59.0
FAN26G2455 Fragaria x ananassa HOM05D004541 ORTHO05D006163 4.4e-54 214.9 200 59.0
MBI01_g28040_MAGBIO Magnolia biondii HOM05D004541 ORTHO05D006163 4.4e-54 214.9 200 58.5
PSO210G2419 Papaver somniferum HOM05D004541 ORTHO05D006163 4.4e-54 214.9 200 58.0
PSO210G5975 Papaver somniferum HOM05D004541 ORTHO05D006163 4.4e-54 214.9 200 58.0
MD15G1183900 Malus domestica HOM05D004541 ORTHO05D006163 5.8e-54 214.5 200 58.5
Sabra18G0068500 Salix brachista HOM05D004541 ORTHO05D006163 5.8e-54 214.5 200 59.0
Sc18g0001290 Simmondsia chinensis HOM05D004541 ORTHO05D006163 5.8e-54 214.5 200 58.5
Solyc09g007300.3 Solanum lycopersicum HOM05D004541 ORTHO05D006163 5.8e-54 214.5 200 58.0
CANSAT56G2738 Cannabis sativa HOM05D004541 ORTHO05D006163 7.5e-54 214.2 200 58.0
CANSAT56G4378 Cannabis sativa HOM05D004541 ORTHO05D006163 7.5e-54 214.2 200 58.0
FAN19G1993 Fragaria x ananassa HOM05D004541 ORTHO05D006163 7.5e-54 214.2 200 58.5
Lj2g0016785 Lotus japonicus HOM05D004541 ORTHO05D006163 7.5e-54 214.2 200 57.5
PGR102G1372 Punica granatum HOM05D004541 ORTHO05D006163 7.5e-54 214.2 200 58.5
VMungo0464G1118 Vigna mungo HOM05D004541 ORTHO05D006163 7.5e-54 214.2 200 57.5
Actinidia07413 Actinidia chinensis HOM05D004541 ORTHO05D006163 1.3e-53 213.4 200 58.5
CAN.G608.21 Capsicum annuum HOM05D004541 ORTHO05D006163 1.3e-53 213.4 200 57.5
Potri.018G081400 Populus trichocarpa HOM05D004541 ORTHO05D006163 1.3e-53 213.4 200 58.5
TWI34G1287 Tripterygium wilfordii HOM05D004541 ORTHO05D006163 1.3e-53 213.4 200 58.0
Aa31LG3G3200 Aethionema arabicum HOM05D004541 ORTHO05D006163 1.7e-53 213.0 200 58.5
SGA_v2.0_scaffold17G08177 Striga asiatica HOM05D004541 ORTHO05D006163 2.2e-53 212.6 200 58.5
ATR0315G070 Amborella trichopoda HOM05D004541 ORTHO05D006163 2.9e-53 212.2 200 57.0
Manes.16G115100 Manihot esculenta HOM05D004541 ORTHO05D006163 2.9e-53 212.2 200 58.0
unitig_8.g3279 Utricularia gibba HOM05D004541 ORTHO05D006163 2.9e-53 212.2 200 57.0
BcaB01g04837 Brassica carinata HOM05D004541 ORTHO05D006163 3.7e-53 211.8 200 58.0
A03p09570 Brassica napus HOM05D004541 ORTHO05D006163 3.7e-53 211.8 200 58.0
C03p11140 Brassica napus HOM05D004541 ORTHO05D006163 3.7e-53 211.8 200 58.0
BolC3t13584H Brassica oleracea HOM05D004541 ORTHO05D006163 3.7e-53 211.8 200 58.0
CDE05G1732 Ceratophyllum demersum HOM05D004541 ORTHO05D006163 3.7e-53 211.8 200 57.0
Phvul.004G164500 Phaseolus vulgaris HOM05D004541 ORTHO05D006163 3.7e-53 211.8 200 56.5
THA.LOC104804980 Tarenaya hassleriana HOM05D004541 ORTHO05D006163 4.9e-53 211.5 200 58.0
Psat1g043400 Pisum sativum HOM05D004541 ORTHO05D006163 6.4e-53 211.1 200 56.5
Carub.0006s1801 Capsella rubella HOM05D004541 ORTHO05D006163 8.3e-53 210.7 200 57.5
Thhalv10012541m.g Eutrema salsugineum HOM05D004541 ORTHO05D006163 8.3e-53 210.7 200 57.5
Sp6g24730 Schrenkiella parvula HOM05D004541 ORTHO05D006163 8.3e-53 210.7 200 57.5
Hund26211 Selenicereus undatus HOM05D004541 ORTHO05D006163 8.3e-53 210.7 200 57.5
Lalb_Chr09g0331191 Lupinus albus HOM05D004541 ORTHO05D006163 1.1e-52 210.3 200 56.5
GSVIVG01015382001 Vitis vinifera HOM05D004541 ORTHO05D006163 1.1e-52 210.3 200 58.0
AL6G31170 Arabidopsis lyrata HOM05D004541 ORTHO05D006163 1.4e-52 209.9 200 57.0
CARHR193250 Cardamine hirsuta HOM05D004541 ORTHO05D006163 1.4e-52 209.9 200 57.0
ECA234G1988 Erigeron canadensis HOM05D004541 ORTHO05D006163 1.9e-52 209.5 200 58.0
HanXRQChr10g0318611 Helianthus annuus HOM05D004541 ORTHO05D006163 1.9e-52 209.5 200 58.0
Pp3c3_30280 Physcomitrium patens HOM05D004541 ORTHO05D006163 1.9e-52 209.5 200 56.0
AUR62010981 Chenopodium quinoa HOM05D004541 ORTHO05D006163 3.2e-52 208.8 200 56.5
AUR62021490 Chenopodium quinoa HOM05D004541 ORTHO05D006163 3.2e-52 208.8 200 56.5
Lsat_1_v5_gn_5_103081 Lactuca sativa HOM05D004541 ORTHO05D006163 3.2e-52 208.8 200 57.5
HPP92_003938 Vanilla planifolia HOM05D004541 ORTHO05D006163 3.2e-52 208.8 200 56.0
EL10Ac8g18481 Beta vulgaris HOM05D004541 ORTHO05D006163 5.4e-52 208.0 200 56.5
CAN.G933.11 Capsicum annuum HOM05D004541 ORTHO05D006163 5.4e-52 208.0 200 56.5
Duzib168G0462 Durio zibethinus HOM05D004541 ORTHO05D006163 9.2e-52 207.2 161 69.6
AT5G19660 Arabidopsis thaliana HOM05D004541 ORTHO05D006163 2.7e-51 205.7 200 56.5
SEGI_41546 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 7.8e-51 204.1 200 56.0
Nitab4.5_0000754g0130 Nicotiana tabacum HOM05D004541 ORTHO05D006163 1.3e-50 203.4 200 55.5
Sopen00g009180 Solanum pennellii HOM05D004541 ORTHO05D006163 1.3e-50 203.4 155 66.5
Mapoly0155s0018 Marchantia polymorpha HOM05D004541 ORTHO05D006163 1.7e-50 203.0 201 55.7
Nn8g39153 Nelumbo nucifera HOM05D004541 ORTHO05D006163 2.3e-50 202.6 200 54.5
Rhsim03G0241000 Rhododendron simsii HOM05D004541 ORTHO05D006163 3.0e-50 202.2 223 52.5
PGSC0003DMG400017594 Solanum tuberosum HOM05D004541 ORTHO05D006163 3.9e-50 201.8 200 55.0
SHI02736 Sapria himalayana HOM05D004541 ORTHO05D006163 6.6e-50 201.1 200 54.5
Peaxi162Scf00005g04811 Petunia axillaris HOM05D004541 ORTHO05D006163 8.6e-50 200.7 152 67.1
SMO347G0168 Selaginella moellendorffii HOM05D004541 ORTHO05D006163 8.6e-50 200.7 200 52.5
BraA03t10274Z Brassica rapa HOM05D004541 ORTHO05D006163 3.3e-49 198.7 223 52.0
Lsat_1_v5_gn_8_105101 Lactuca sativa HOM05D004541 ORTHO05D006163 1.6e-48 196.4 201 53.7
AagrBONN_evm.TU.Sc2ySwM_344.4490 Anthoceros agrestis HOM05D004541 ORTHO05D006163 1.1e-47 193.7 201 52.2
VMungo0464G1847 Vigna mungo HOM05D004541 ORTHO05D006163 1.2e-46 190.3 215 50.2
Haze_25735 Corylus avellana HOM05D004541 ORTHO05D006163 1.3e-45 186.8 125 75.2
MCO08G100 Micromonas commoda HOM05D004541 ORTHO05D006163 7.1e-44 181.0 200 51.0
PRCOL_00005929 Prasinoderma coloniale HOM05D004541 ORTHO05D006163 6.0e-43 177.9 200 49.5
Gohir.A08G241500 Gossypium hirsutum HOM05D004541 ORTHO05D006163 3.9e-42 175.3 149 63.8
Gohir.D08G262300 Gossypium hirsutum HOM05D004541 ORTHO05D006163 3.9e-42 175.3 149 63.8
Thecc.09G109100 Theobroma cacao HOM05D004541 ORTHO05D006163 3.9e-42 175.3 149 63.8
Nitab4.5_0001142g0040 Nicotiana tabacum HOM05D004541 ORTHO05D006163 8.7e-42 174.1 149 62.4
Nitab4.5_0007565g0030 Nicotiana tabacum HOM05D004541 ORTHO05D006163 8.7e-42 174.1 149 62.4
Glyma.09G191400 Glycine max HOM05D004541 ORTHO05D006163 2.5e-41 172.6 149 61.1
CsaV3_1G024300 Cucumis sativus L. HOM05D004541 ORTHO05D006163 5.6e-41 171.4 149 61.1
FvH4_1g04670 Fragaria vesca HOM05D004541 ORTHO05D006163 5.6e-41 171.4 149 61.7
Cre14.g628800 Chlamydomonas reinhardtii HOM05D004541 ORTHO05D006163 8.1e-40 167.5 201 45.3
CBR_g30873 Chara braunii HOM05D004541 ORTHO05D000800 1.1e-39 167.2 122 66.4
CSS0008653 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D001797 4.0e-31 138.7 73 87.7
CSS0038393 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D001797 1.2e-30 137.1 73 86.3
CSS0024771 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D001797 5.8e-30 134.8 68 92.6
Ah.14g082120 Amaranthus hybridus HOM05D004541 ORTHO05D006163 7.9e-27 124.4 100 65.0
Nitab4.5_0000754g0080 Nicotiana tabacum HOM05D004541 ORTHO05D006163 1.0e-26 124.0 105 62.9
CSS0002864 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D001797 1.1e-25 120.6 57 98.2
Lsat_1_v5_gn_5_96741 Lactuca sativa HOM05D004541 ORTHO05D006163 2.5e-25 119.4 142 49.3
Actinidia32680 Actinidia chinensis HOM05D004541 ORTHO05D006163 1.7e-21 106.7 119 51.3
CAN.G268.4 Capsicum annuum HOM05D004541 ORTHO05D006163 1.9e-20 103.2 104 55.8
Cpa.g.sc23.98 Carica papaya HOM05D004541 ORTHO05D006163 1.8e-15 86.7 219 34.7
Nitab4.5_0006929g0020 Nicotiana tabacum HOM05D004541 ORTHO05D006163 4.5e-14 82.0 157 39.5
Ah.14g082140 Amaranthus hybridus HOM05D004541 ORTHO05D006163 5.1e-10 68.6 90 43.3
Lj3g0016708 Lotus japonicus HOM05D004541 ORTHO05D006163 7.4e-09 64.7 87 42.5


User provided reference genes

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