Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25706 Corylus avellana HOM05D007609 ORTHO05D009539 8.1e-48 193.4 94 100.0
Cfa003264 Carpinus fangiana HOM05D007609 ORTHO05D009539 1.4e-36 156.0 94 83.0
QL02p085521 Quercus lobata HOM05D007609 ORTHO05D009539 1.4e-20 102.8 82 67.1
TAR383G0714 Trochodendron aralioides HOM05D007609 ORTHO05D009539 2.7e-19 98.6 85 58.8
CSS0012617 Camellia sinensis var. sinensis HOM05D007609 ORTHO05D009539 1.3e-16 89.7 84 52.4
Thecc.09G111700 Theobroma cacao HOM05D007609 ORTHO05D009539 1.3e-16 89.7 86 58.1
Potri.018G078900 Populus trichocarpa HOM05D007609 ORTHO05D009539 1.1e-15 86.7 88 56.8
Ciclev10010038m.g Citrus clementina HOM05D007609 ORTHO05D009539 1.8e-15 85.9 90 53.3
Atru.chr7.1339 Acer truncatum HOM05D007609 ORTHO05D009539 4.1e-15 84.7 83 57.8
Cpa.g.sc451.1 Carica papaya HOM05D007609 ORTHO05D009539 6.9e-15 84.0 93 49.5
Sabra18G0066900 Salix brachista HOM05D007609 ORTHO05D009539 9.0e-15 83.6 87 54.0
TPR.G35275 Trifolium pratense HOM05D007609 ORTHO05D009539 1.5e-14 82.8 87 47.1
Nn8g39210 Nelumbo nucifera HOM05D007609 ORTHO05D009539 2.6e-14 82.0 78 53.8
FAN28G0995 Fragaria x ananassa HOM05D007609 ORTHO05D009539 5.9e-14 80.9 87 52.9
RcHm_v2.0_Chr2g0090641 Rosa chinensis HOM05D007609 ORTHO05D009539 1.7e-13 79.3 98 45.9
Nn2g11764 Nelumbo nucifera HOM05D007609 ORTHO05D009539 6.5e-13 77.4 89 48.3
FvH4_1g05030 Fragaria vesca HOM05D007609 ORTHO05D009539 1.4e-12 76.3 91 48.4
Potri.006G159300 Populus trichocarpa HOM05D007609 ORTHO05D009539 1.4e-12 76.3 87 52.9
FAN26G1953 Fragaria x ananassa HOM05D007609 ORTHO05D009539 1.9e-12 75.9 91 47.3
FAN26G2876 Fragaria x ananassa HOM05D007609 ORTHO05D009539 1.9e-12 75.9 91 47.3
Prupe.7G229700 Prunus persica HOM05D007609 ORTHO05D009539 1.9e-12 75.9 114 44.7
Aqoxy7G01699 Aquilegia oxysepala HOM05D007609 ORTHO05D009539 2.5e-12 75.5 90 44.4
Hma1.2p1_0018F.1_g013450 Hydrangea macrophylla HOM05D007609 ORTHO05D009539 2.5e-12 75.5 87 49.4
Manes.16G116800 Manihot esculenta HOM05D007609 ORTHO05D009539 2.5e-12 75.5 89 48.3
TAR626G0143 Trochodendron aralioides HOM05D007609 ORTHO05D025968 4.2e-12 74.7 84 47.6
Dinv38045 Davidia involucrata HOM05D007609 ORTHO05D009539 5.5e-12 74.3 85 49.4
Manes.03G019500 Manihot esculenta HOM05D007609 ORTHO05D009539 7.2e-12 73.9 88 44.3
Psat1g041120 Pisum sativum HOM05D007609 ORTHO05D009539 7.2e-12 73.9 78 52.6
Glyma.07G087100 Glycine max HOM05D007609 ORTHO05D009539 9.4e-12 73.6 87 48.3
Gohir.A06G061700 Gossypium hirsutum HOM05D007609 ORTHO05D009539 9.4e-12 73.6 87 49.4
Gorai.010G069800 Gossypium raimondii HOM05D007609 ORTHO05D009539 9.4e-12 73.6 86 45.3
Lj2g0010717 Lotus japonicus HOM05D007609 ORTHO05D009539 9.4e-12 73.6 87 46.0
Gohir.D06G060000 Gossypium hirsutum HOM05D007609 ORTHO05D009539 2.1e-11 72.4 86 45.3
Gohir.A07G006801 Gossypium hirsutum HOM05D007609 ORTHO05D009539 2.7e-11 72.0 74 48.6
Gohir.D07G005100 Gossypium hirsutum HOM05D007609 ORTHO05D009539 2.7e-11 72.0 74 51.4
Gorai.001G004700 Gossypium raimondii HOM05D007609 ORTHO05D009539 2.7e-11 72.0 74 50.0
Ca_25525_v3 Cicer arietinum L. HOM05D007609 ORTHO05D009539 6.1e-11 70.9 86 46.5
Medtr6g086445 Medicago truncatula HOM05D007609 ORTHO05D009539 1.0e-10 70.1 87 47.1
Gohir.A08G241000 Gossypium hirsutum HOM05D007609 ORTHO05D009539 1.8e-10 69.3 86 43.0
Lalb_Chr22g0352851 Lupinus albus HOM05D007609 ORTHO05D009539 1.8e-10 69.3 89 44.9
Glyma.09G189800 Glycine max HOM05D007609 ORTHO05D009539 3.9e-10 68.2 87 43.7
Gohir.D08G261700 Gossypium hirsutum HOM05D007609 ORTHO05D009539 5.1e-10 67.8 86 43.0
Gorai.004G279800 Gossypium raimondii HOM05D007609 ORTHO05D009539 5.1e-10 67.8 86 43.0
HanXRQChr10g0317871 Helianthus annuus HOM05D007609 ORTHO05D009539 6.7e-10 67.4 91 42.9
Rhsim08G0221700 Rhododendron simsii HOM05D007609 ORTHO05D009539 2.0e-09 65.9 59 54.2
Hma1.2p1_0092F.1_g046650 Hydrangea macrophylla HOM05D007609 ORTHO05D009539 2.5e-09 65.5 87 41.4
Eucgr.C03849 Eucalyptus grandis HOM05D007609 ORTHO05D009539 3.3e-09 65.1 97 41.2
Lsat_1_v5_gn_5_101501 Lactuca sativa HOM05D007609 ORTHO05D009539 3.3e-09 65.1 45 62.2
Medtr8g083460 Medicago truncatula HOM05D007609 ORTHO05D009539 4.3e-09 64.7 91 44.0
FAN23G1574 Fragaria x ananassa HOM05D007609 ORTHO05D009539 5.7e-09 64.3 29 82.8
vmacro18908 Vaccinium macrocarpon HOM05D007609 ORTHO05D009539 5.7e-09 64.3 68 52.9
QL05p023464 Quercus lobata HOM05D007609 ORTHO05D009539 9.7e-09 63.5 87 43.7
Phvul.004G162600 Phaseolus vulgaris HOM05D007609 ORTHO05D009539 1.3e-08 63.2 87 43.7
COL.COLO4_34908 Corchorus olitorius HOM05D007609 ORTHO05D009539 6.3e-08 60.8 86 46.5
Nitab4.5_0000351g0200 Nicotiana tabacum HOM05D007609 ORTHO05D009539 6.3e-08 60.8 81 43.2
SGA_v2.0_scaffold5G02584 Striga asiatica HOM05D007609 ORTHO05D009539 6.3e-08 60.8 93 38.7
Peaxi162Scf00207g00095 Petunia axillaris HOM05D007609 ORTHO05D009539 8.2e-08 60.5 91 39.6
PGSC0003DMG400016536 Solanum tuberosum HOM05D007609 ORTHO05D009539 1.1e-07 60.1 88 42.0
PGSC0003DMG400005604 Solanum tuberosum HOM05D007609 ORTHO05D009539 1.8e-07 59.3 81 43.2
VMungo0464G1934 Vigna mungo HOM05D007609 ORTHO05D009539 1.8e-07 59.3 62 50.0
Solyc06g066700.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 4.1e-07 58.2 84 41.7
QL10p054851 Quercus lobata HOM05D007609 ORTHO05D009539 6.9e-07 57.4 80 42.5
Peaxi162Scf00015g00416 Petunia axillaris HOM05D007609 ORTHO05D009539 9.1e-07 57.0 86 40.7
Lsat_1_v5_gn_4_103641 Lactuca sativa HOM05D007609 ORTHO05D009539 1.2e-06 56.6 81 40.7
Lalb_Chr05g0222821 Lupinus albus HOM05D007609 ORTHO05D009539 1.2e-06 56.6 93 43.0
Sopen06g024990 Solanum pennellii HOM05D007609 ORTHO05D009539 1.2e-06 56.6 84 41.7
TAR624G1182 Trochodendron aralioides HOM05D007609 ORTHO05D009539 1.2e-06 56.6 76 48.7
DCAR_028717 Daucus carota HOM05D007609 ORTHO05D009539 1.5e-06 56.2 73 45.2
Sed0019634 Sechium edule HOM05D007609 ORTHO05D009539 3.4e-06 55.1 91 38.5
Eucgr.C01049 Eucalyptus grandis HOM05D007609 ORTHO05D009539 4.5e-06 54.7 84 39.3
Lj4g0003308 Lotus japonicus HOM05D007609 ORTHO05D009539 4.5e-06 54.7 50 58.0
Peaxi162Scf00560g00120 Petunia axillaris HOM05D007609 ORTHO05D009539 4.5e-06 54.7 76 43.4
Sc18g0001160 Simmondsia chinensis HOM05D007609 ORTHO05D009539 4.5e-06 54.7 29 79.3
AUR62011005 Chenopodium quinoa HOM05D007609 ORTHO05D009539 5.9e-06 54.3 83 43.4
unitig_899.g14776 Utricularia gibba HOM05D007609 ORTHO05D009539 5.9e-06 54.3 57 50.9


User provided reference genes

Program Settings