Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25622 Corylus avellana HOM05D007420 ORTHO05D009353 1.2e-56 223.0 114 100.0
Cfa003340 Carpinus fangiana HOM05D007420 ORTHO05D009353 2.7e-29 132.1 68 97.1
QL02p087339 Quercus lobata HOM05D007420 ORTHO05D009353 9.6e-27 123.6 69 89.9
CiPaw.03G239800 Carya illinoinensis HOM05D007420 ORTHO05D009353 3.6e-26 121.7 70 82.9
Gohir.A06G058200 Gossypium hirsutum HOM05D007420 ORTHO05D009353 4.0e-25 118.2 71 84.5
Gohir.D06G056500 Gossypium hirsutum HOM05D007420 ORTHO05D009353 4.0e-25 118.2 71 84.5
Eucgr.C01109 Eucalyptus grandis HOM05D007420 ORTHO05D009353 2.0e-24 115.9 71 78.9
CANSAT56G4260 Cannabis sativa HOM05D007420 ORTHO05D009353 3.4e-24 115.2 71 80.3
Gorai.010G066200 Gossypium raimondii HOM05D007420 ORTHO05D009353 9.9e-24 113.6 68 85.3
Thecc.09G120400 Theobroma cacao HOM05D007420 ORTHO05D009353 2.2e-23 112.5 68 82.4
Eucgr.C01298 Eucalyptus grandis HOM05D007420 ORTHO05D009353 3.8e-23 111.7 68 80.9
Glyma.05G010400 Glycine max HOM05D007420 ORTHO05D009353 4.9e-23 111.3 73 76.7
Manes.06G052500 Manihot esculenta HOM05D007420 ORTHO05D009353 4.9e-23 111.3 71 76.1
Phvul.003G161000 Phaseolus vulgaris HOM05D007420 ORTHO05D009353 6.4e-23 110.9 71 73.2
Ciclev10009973m.g Citrus clementina HOM05D007420 ORTHO05D009353 8.4e-23 110.5 68 79.4
Lalb_Chr13g0302091 Lupinus albus HOM05D007420 ORTHO05D009353 8.4e-23 110.5 71 76.1
Dinv36572 Davidia involucrata HOM05D007420 ORTHO05D009353 1.1e-22 110.2 68 75.0
TWI34G1269 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 1.1e-22 110.2 72 79.2
Eucgr.L02717 Eucalyptus grandis HOM05D007420 ORTHO05D009353 1.4e-22 109.8 68 79.4
Atru.chr7.1239 Acer truncatum HOM05D007420 ORTHO05D009353 1.9e-22 109.4 71 74.6
TWI32G1185 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 1.9e-22 109.4 73 78.1
vmacro20648 Vaccinium macrocarpon HOM05D007420 ORTHO05D009353 1.9e-22 109.4 68 77.9
arahy.Tifrunner.gnm1.ann1.QR7ILI Arachis hypogaea HOM05D007420 ORTHO05D009353 3.2e-22 108.6 65 81.5
CSS0016223 Camellia sinensis var. sinensis HOM05D007420 ORTHO05D009353 3.2e-22 108.6 68 76.5
Oeu021594.1 Olea europaea HOM05D007420 ORTHO05D009353 3.2e-22 108.6 71 78.9
Potri.011G024500 Populus trichocarpa HOM05D007420 ORTHO05D009353 4.2e-22 108.2 73 75.3
arahy.Tifrunner.gnm1.ann1.XPL4AE Arachis hypogaea HOM05D007420 ORTHO05D009353 1.2e-21 106.7 65 80.0
Cc06_g08970 Coffea canephora HOM05D007420 ORTHO05D009353 1.2e-21 106.7 71 74.6
PGR102G0502 Punica granatum HOM05D007420 ORTHO05D009353 1.6e-21 106.3 70 70.0
THA.LOC104809007 Tarenaya hassleriana HOM05D007420 ORTHO05D009353 2.7e-21 105.5 73 72.6
Nn8g39361 Nelumbo nucifera HOM05D007420 ORTHO05D009353 4.6e-21 104.8 71 71.8
Sed0006703 Sechium edule HOM05D007420 ORTHO05D009353 6.0e-21 104.4 71 70.4
Nn2g11931 Nelumbo nucifera HOM05D007420 ORTHO05D009353 7.8e-21 104.0 71 70.4
Sabra11G0015300 Salix brachista HOM05D007420 ORTHO05D009353 1.3e-20 103.2 104 58.7
Prupe.7G237700 Prunus persica HOM05D007420 ORTHO05D009353 1.7e-20 102.8 66 75.8
Actinidia22015 Actinidia chinensis HOM05D007420 ORTHO05D009353 2.3e-20 102.4 68 72.1
TPR.G9078 Trifolium pratense HOM05D007420 ORTHO05D009353 2.3e-20 102.4 70 74.3
CDE01G0426 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 3.0e-20 102.1 71 70.4
SalBow6G6280 Salvia bowleyana HOM05D007420 ORTHO05D009353 3.0e-20 102.1 65 78.5
RcHm_v2.0_Chr2g0089401 Rosa chinensis HOM05D007420 ORTHO05D009353 6.6e-20 100.9 70 72.9
Thhalv10019233m.g Eutrema salsugineum HOM05D007420 ORTHO05D009353 1.9e-19 99.4 71 73.2
CsaV3_2G002630 Cucumis sativus L. HOM05D007420 ORTHO05D009353 3.3e-19 98.6 68 73.5
Eucgr.C01288 Eucalyptus grandis HOM05D007420 ORTHO05D009353 3.3e-19 98.6 62 74.2
AL2G27600 Arabidopsis lyrata HOM05D007420 ORTHO05D009353 5.6e-19 97.8 71 71.8
Sp5g23780 Schrenkiella parvula HOM05D007420 ORTHO05D009353 5.6e-19 97.8 71 71.8
Carub.0002s1522 Capsella rubella HOM05D007420 ORTHO05D009353 9.6e-19 97.1 71 70.4
CDE03G0079 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 9.6e-19 97.1 71 67.6
Hma1.2p1_0018F.1_g012820 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 9.6e-19 97.1 68 70.6
CARHR061490 Cardamine hirsuta HOM05D007420 ORTHO05D009353 1.6e-18 96.3 71 70.4
AT1G68680 Arabidopsis thaliana HOM05D007420 ORTHO05D009353 2.1e-18 95.9 71 70.4
BolC6t38847H Brassica oleracea HOM05D007420 ORTHO05D009353 2.8e-18 95.5 71 69.0
ClCG11G002810 Citrullus lanatus HOM05D007420 ORTHO05D009353 2.8e-18 95.5 71 67.6
FvH4_1g03930 Fragaria vesca HOM05D007420 ORTHO05D009353 2.8e-18 95.5 70 68.6
CAN.G1424.4 Capsicum annuum HOM05D007420 ORTHO05D009353 4.8e-18 94.7 71 67.6
Duzib150G1214 Durio zibethinus HOM05D007420 ORTHO05D009353 4.8e-18 94.7 52 88.5
MD15G1177800 Malus domestica HOM05D007420 ORTHO05D009353 4.8e-18 94.7 69 69.6
Migut.L01525 Erythranthe guttata HOM05D007420 ORTHO05D009353 6.2e-18 94.4 68 72.1
HanXRQChr03g0062071 Helianthus annuus HOM05D007420 ORTHO05D009353 6.2e-18 94.4 70 67.1
Psat4g040560 Pisum sativum HOM05D007420 ORTHO05D009353 6.2e-18 94.4 70 65.7
C06p37440 Brassica napus HOM05D007420 ORTHO05D032647 1.1e-17 93.6 73 65.8
MELO3C004528.2 Cucumis melo HOM05D007420 ORTHO05D009353 1.1e-17 93.6 69 73.9
Aa31sc12G90 Aethionema arabicum HOM05D007420 ORTHO05D009353 1.4e-17 93.2 70 65.7
BcaB03g15440 Brassica carinata HOM05D007420 ORTHO05D009353 1.4e-17 93.2 69 71.0
BcaC08g45947 Brassica carinata HOM05D007420 ORTHO05D009353 1.4e-17 93.2 69 71.0
SalBow1G2150 Salvia bowleyana HOM05D007420 ORTHO05D009353 1.8e-17 92.8 68 69.1
FAN23G1905 Fragaria x ananassa HOM05D007420 ORTHO05D009353 2.4e-17 92.4 67 71.6
FAN26G1322 Fragaria x ananassa HOM05D007420 ORTHO05D009353 2.4e-17 92.4 67 71.6
FAN28G1248 Fragaria x ananassa HOM05D007420 ORTHO05D009353 2.4e-17 92.4 67 71.6
MD02G1037600 Malus domestica HOM05D007420 ORTHO05D009353 3.1e-17 92.0 66 72.7
FAN22G2307 Fragaria x ananassa HOM05D022909 ORTHO05D009353 4.0e-17 91.7 67 71.6
Lj4g0001906 Lotus japonicus HOM05D007420 ORTHO05D009353 4.0e-17 91.7 78 62.8
Nitab4.5_0000750g0050 Nicotiana tabacum HOM05D007420 ORTHO05D009353 4.0e-17 91.7 68 70.6
Nitab4.5_0001193g0010 Nicotiana tabacum HOM05D007420 ORTHO05D009353 4.0e-17 91.7 68 70.6
ECA240G1805 Erigeron canadensis HOM05D007420 ORTHO05D009353 5.3e-17 91.3 62 71.0
BcaB03g15439 Brassica carinata HOM05D007420 ORTHO05D009353 1.2e-16 90.1 67 70.1
AUR62033448 Chenopodium quinoa HOM05D007420 ORTHO05D009353 1.2e-16 90.1 70 65.7
Hund09157 Selenicereus undatus HOM05D007420 ORTHO05D009353 1.5e-16 89.7 68 72.1
Sc14g0000270 Simmondsia chinensis HOM05D007420 ORTHO05D009353 1.5e-16 89.7 75 68.0
BraA07t30816Z Brassica rapa HOM05D007420 ORTHO05D009353 2.0e-16 89.4 68 69.1
EL10Ac8g18588 Beta vulgaris HOM05D007420 ORTHO05D009353 2.6e-16 89.0 69 68.1
SHI28897 Sapria himalayana HOM05D007420 ORTHO05D009353 2.6e-16 89.0 75 60.0
HPP92_024085 Vanilla planifolia HOM05D007420 ORTHO05D009353 4.5e-16 88.2 79 62.0
A07p31870 Brassica napus HOM05D007420 ORTHO05D009353 5.8e-16 87.8 67 68.7
FAN19G3121 Fragaria x ananassa HOM05D007420 ORTHO05D009353 5.8e-16 87.8 60 70.0
PSO170G5167 Papaver somniferum HOM05D007420 ORTHO05D009353 7.6e-16 87.4 55 76.4
Solyc07g005430.3 Solanum lycopersicum HOM05D007420 ORTHO05D009353 7.6e-16 87.4 64 64.1
Sopen07g001360 Solanum pennellii HOM05D007420 ORTHO05D009353 7.6e-16 87.4 64 64.1
unitig_85.g27256 Utricularia gibba HOM05D000953 ORTHO05D000231 7.6e-16 87.4 54 77.8
GSVIVG01015481001 Vitis vinifera HOM05D007420 ORTHO05D009353 1.7e-15 86.3 74 56.8
Hma1.2p1_0018F.1_g012830 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 2.2e-15 85.9 55 72.7
Pp3c11_6600 Physcomitrium patens HOM05D007420 ORTHO05D009353 8.4e-15 84.0 64 60.9
DCAR_014860 Daucus carota HOM05D007420 ORTHO05D009353 1.1e-14 83.6 67 61.2
Peaxi162Scf00361g00611 Petunia axillaris HOM05D007420 ORTHO05D009353 1.9e-14 82.8 64 62.5
SEGI_24866 Sequoiadendron giganteum HOM05D007420 ORTHO05D009353 4.2e-14 81.6 70 60.0
Zm00001eb283090 Zea mays HOM05D007420 ORTHO05D009353 9.3e-14 80.5 74 59.5
Mapoly0048s0106 Marchantia polymorpha HOM05D007420 ORTHO05D009353 1.8e-12 76.3 61 62.3
AagrBONN_evm.TU.Sc2ySwM_362.2614 Anthoceros agrestis HOM05D007420 ORTHO05D009353 8.7e-12 73.9 56 64.3
PGSC0003DMG401011174 Solanum tuberosum HOM05D007420 ORTHO05D009353 4.3e-11 71.6 80 48.8
Os05g0176600 Oryza sativa ssp. japonica HOM05D007420 ORTHO05D009353 6.2e-10 67.8 43 76.7
CBR_g3296 Chara braunii HOM05D007420 ORTHO05D009353 9.0e-09 63.9 72 45.8
MBI01_g34140_MAGBIO Magnolia biondii HOM05D007420 ORTHO05D009353 4.9e-07 58.2 38 68.4
Eucgr.C01292 Eucalyptus grandis HOM05D007420 ORTHO05D009353 1.1e-06 57.0 30 86.7
Glyma.13G033951 Glycine max HOM05D007420 ORTHO05D009353 1.1e-06 57.0 38 68.4


User provided reference genes

Program Settings