Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 7.2e-256 886.7 439 100.0
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 1.4e-248 862.4 439 97.0
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 2.6e-221 771.9 447 85.9
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 1.6e-207 726.1 408 87.0
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 2.7e-202 708.8 442 80.8
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 3.9e-201 704.9 438 79.9
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 8.6e-201 703.7 439 80.0
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 1.9e-200 702.6 439 79.7
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 2.5e-200 702.2 436 80.3
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.2e-199 699.9 439 79.5
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 2.8e-199 698.7 443 81.3
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 2.0e-197 692.6 448 77.9
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 7.5e-197 690.6 439 79.0
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 4.1e-195 684.9 406 82.3
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 4.6e-194 681.4 439 76.5
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 1.9e-192 676.0 441 78.0
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 9.5e-192 673.7 435 76.8
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 2.6e-189 665.6 446 76.2
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 4.4e-189 664.8 446 76.7
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 4.4e-189 664.8 446 76.2
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 3.8e-188 661.8 440 76.1
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 1.1e-187 660.2 438 75.8
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 1.2e-186 656.8 429 76.9
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 4.6e-186 654.8 443 74.7
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 1.7e-185 652.9 441 74.8
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 5.1e-185 651.4 445 74.4
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 6.6e-185 651.0 426 77.2
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 4.3e-184 648.3 446 73.5
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 4.3e-184 648.3 445 73.9
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 9.6e-184 647.1 439 73.3
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 1.6e-183 646.4 413 77.5
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.6e-183 646.4 447 73.6
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 4.7e-183 644.8 454 72.2
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 2.0e-181 639.4 448 73.4
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 3.4e-181 638.6 451 71.6
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 6.4e-180 634.4 438 71.5
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 8.4e-180 634.0 409 76.5
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 7.1e-179 630.9 452 71.9
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 9.3e-179 630.6 440 73.0
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 2.1e-178 629.4 441 73.5
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 4.6e-178 628.2 408 75.2
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 2.3e-177 625.9 395 77.0
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 2.3e-177 625.9 440 72.0
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 2.3e-177 625.9 444 70.5
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 5.1e-177 624.8 430 73.7
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 1.5e-176 623.2 405 74.6
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 2.5e-176 622.5 421 74.8
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 7.3e-176 620.9 443 72.2
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 9.6e-176 620.5 495 69.1
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 4.8e-175 618.2 413 74.8
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 8.1e-175 617.5 404 74.8
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 1.1e-174 617.1 418 73.7
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 1.1e-174 617.1 426 71.6
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 1.1e-174 617.1 439 70.8
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 5.3e-174 614.8 417 72.2
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 5.3e-174 614.8 410 72.4
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 1.2e-173 613.6 387 76.2
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 1.2e-173 613.6 453 71.3
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 2.6e-173 612.5 447 70.0
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 4.5e-173 611.7 394 77.7
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 4.5e-173 611.7 439 70.6
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 5.8e-173 611.3 441 70.1
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 7.6e-173 610.9 438 70.3
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 2.2e-172 609.4 419 71.4
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 3.8e-172 608.6 438 70.8
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 8.4e-172 607.4 409 73.8
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 1.1e-171 607.1 439 70.2
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 4.2e-171 605.1 401 75.1
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 7.9e-170 600.9 445 71.9
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 5.1e-169 598.2 443 69.1
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 8.7e-169 597.4 434 72.1
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 1.5e-168 596.7 403 73.9
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 1.5e-168 596.7 402 71.9
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 1.9e-168 596.3 408 72.1
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 7.4e-168 594.3 444 69.4
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 2.8e-167 592.4 421 70.8
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 3.7e-167 592.0 407 72.5
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 3.7e-167 592.0 407 72.5
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 6.2e-167 591.3 443 70.0
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 8.1e-167 590.9 439 69.5
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 1.1e-166 590.5 407 72.0
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 1.1e-166 590.5 429 71.1
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 1.4e-166 590.1 444 71.2
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 1.8e-166 589.7 451 69.8
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 4.0e-166 588.6 388 73.5
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 1.5e-165 586.6 413 71.2
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 4.5e-165 585.1 417 71.7
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 4.5e-165 585.1 423 70.4
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 4.5e-165 585.1 417 71.7
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 5.8e-165 584.7 404 72.5
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 1.3e-164 583.6 396 72.5
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 2.2e-164 582.8 423 70.2
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 5.5e-163 578.2 407 71.5
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 7.1e-163 577.8 396 71.7
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 1.6e-162 576.6 437 68.9
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 1.6e-162 576.6 373 76.9
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 1.3e-161 573.5 438 66.2
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 5.1e-161 571.6 418 68.7
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 8.7e-161 570.9 390 73.3
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 3.3e-160 568.9 424 69.1
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 4.3e-160 568.5 410 71.0
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 9.6e-160 567.4 450 64.9
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 1.3e-159 567.0 393 71.8
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 1.3e-159 567.0 311 88.1
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 1.4e-158 563.5 396 70.5
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 9.0e-158 560.8 418 68.7
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.9e-156 555.8 402 69.2
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 1.4e-155 553.5 394 69.5
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 2.5e-155 552.7 391 69.8
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 1.2e-154 550.4 398 68.3
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 1.8e-153 546.6 389 68.9
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 1.8e-153 546.6 390 67.4
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 5.1e-153 545.0 389 70.4
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 6.7e-153 544.7 388 69.3
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 8.7e-153 544.3 389 68.1
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 1.1e-152 543.9 389 70.2
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 2.4e-150 536.2 436 63.5
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 2.2e-148 529.6 347 76.7
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 7.2e-147 524.6 385 66.5
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 1.2e-146 523.9 329 76.6
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 4.6e-146 521.9 398 67.6
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 1.1e-142 510.8 386 66.3
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 2.4e-142 509.6 388 67.5
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 4.1e-142 508.8 397 66.2
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 6.9e-142 508.1 387 65.6
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 3.6e-138 495.7 398 61.8
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.4e-134 483.0 263 87.5
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 5.3e-134 481.9 406 62.1
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.4e-126 457.2 387 60.7
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 3.5e-117 426.0 280 75.0
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.0e-112 410.2 252 77.4
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.6e-112 409.8 248 78.2
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 9.5e-107 391.3 282 69.9
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 1.0e-105 387.9 281 67.3
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 5.4e-102 375.6 385 50.4
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 2.3e-92 343.6 274 58.0
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 3.0e-92 343.2 399 48.4
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 7.3e-91 338.6 419 46.1
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 1.4e-89 334.3 234 69.7
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 1.4e-89 334.3 256 62.9
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 5.4e-78 295.8 174 82.2
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.7e-76 290.8 197 74.1
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 1.0e-68 265.0 176 72.7
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 3.4e-64 250.0 296 45.6
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 2.2e-63 247.3 199 64.8
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 3.3e-59 233.4 202 58.4
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.1e-50 204.1 196 55.6
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 1.9e-46 191.0 118 81.4
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.7e-45 187.2 203 53.2
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 6.0e-45 186.0 234 47.9
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 1.6e-42 177.9 231 42.0
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 4.2e-38 163.3 82 90.2
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 3.0e-36 157.1 232 43.5
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 1.2e-32 145.2 181 47.0
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 1.4e-30 138.3 304 32.6
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 1.6e-29 134.8 76 85.5
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 2.7e-29 134.0 366 31.1
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 9.7e-27 125.6 254 34.3
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 4.8e-26 123.2 349 27.8
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.1e-25 122.1 64 85.9
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 1.8e-25 121.3 262 36.6
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.1e-25 120.6 64 84.4
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 5.3e-25 119.8 64 84.4
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 1.7e-18 98.2 119 47.1
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 2.2e-18 97.8 141 37.6
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 6.3e-18 96.3 146 40.4
Psat3g000160 Pisum sativum HOM05D004174 ORTHO05D004624 3.1e-17 94.0 118 46.6
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 3.0e-12 77.4 94 47.9
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 7.5e-11 72.8 67 50.7
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.4e-09 68.6 38 78.9
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 2.0e-08 64.7 119 37.0
Duzib093G0286 Durio zibethinus HOM05D005723 ORTHO05D005968 2.5e-06 57.8 144 28.5


User provided reference genes

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