Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 5.0e-151 537.7 266 100.0
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 1.2e-115 420.2 291 73.9
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 1.2e-112 410.2 292 72.3
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 1.5e-110 403.3 290 73.1
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 1.2e-109 400.2 291 71.5
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 1.0e-108 397.1 292 70.2
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 1.3e-106 390.2 292 69.5
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 2.2e-106 389.4 294 69.4
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 8.3e-106 387.5 288 69.4
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 2.4e-105 386.0 293 69.3
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 1.6e-104 383.3 284 70.8
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 2.0e-104 382.9 290 68.3
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 2.7e-104 382.5 290 68.3
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 4.5e-104 381.7 272 69.9
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 5.9e-104 381.3 286 69.6
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 1.7e-103 379.8 294 67.0
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 2.3e-103 379.4 272 69.9
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 2.3e-103 379.4 275 70.2
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 3.8e-103 378.6 292 68.5
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 6.6e-103 377.9 272 69.5
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 8.6e-103 377.5 293 67.9
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 1.1e-102 377.1 293 67.2
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.9e-102 376.3 272 71.3
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 3.3e-102 375.6 292 66.1
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 3.3e-102 375.6 292 66.1
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 3.3e-102 375.6 292 66.1
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 7.3e-102 374.4 292 68.5
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 7.3e-102 374.4 285 67.7
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 9.5e-102 374.0 273 68.5
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 9.5e-102 374.0 292 68.2
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 1.2e-101 373.6 269 69.1
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 1.6e-101 373.2 273 70.7
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 1.6e-101 373.2 292 67.8
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 2.1e-101 372.9 292 68.2
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 2.1e-101 372.9 268 69.8
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 2.1e-101 372.9 268 69.8
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 2.1e-101 372.9 292 67.5
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 3.6e-101 372.1 257 73.5
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 4.7e-101 371.7 269 71.4
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 6.1e-101 371.3 281 68.0
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 8.0e-101 370.9 269 71.0
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.4e-100 370.2 292 67.8
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 2.3e-100 369.4 268 71.6
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 3.0e-100 369.0 290 67.2
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 4.0e-100 368.6 263 70.7
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 6.8e-100 367.9 292 67.5
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 6.8e-100 367.9 292 66.8
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 6.8e-100 367.9 293 67.2
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 8.9e-100 367.5 275 68.7
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 1.2e-99 367.1 273 68.1
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 1.5e-99 366.7 273 68.1
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 3.4e-99 365.5 292 65.1
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 5.7e-99 364.8 273 67.4
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 9.8e-99 364.0 271 69.7
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 2.2e-98 362.8 292 64.7
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 2.2e-98 362.8 297 66.7
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 2.9e-98 362.5 289 64.7
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 6.4e-98 361.3 269 67.3
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 8.3e-98 360.9 339 60.2
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 3.2e-97 359.0 266 69.9
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 2.0e-96 356.3 268 66.4
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 1.0e-95 354.0 291 66.0
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 1.0e-95 354.0 285 66.3
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 1.7e-95 353.2 291 64.6
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 2.3e-95 352.8 273 65.6
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 6.6e-95 351.3 290 63.1
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 6.6e-95 351.3 290 63.1
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 6.6e-95 351.3 273 66.7
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 1.9e-94 349.7 270 65.6
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 4.3e-94 348.6 293 63.1
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 4.3e-94 348.6 263 66.5
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 2.8e-93 345.9 265 66.4
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 3.6e-93 345.5 228 75.9
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 4.0e-92 342.0 266 68.0
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 1.5e-91 340.1 290 62.4
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 2.0e-91 339.7 269 66.5
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 5.8e-91 338.2 288 61.5
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 7.5e-91 337.8 290 63.1
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 9.8e-91 337.4 292 61.6
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 4.9e-90 335.1 292 60.3
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 5.4e-89 331.6 268 65.3
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 9.2e-89 330.9 294 61.6
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 2.3e-87 326.2 293 60.8
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 3.9e-87 325.5 277 59.9
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 2.1e-85 319.7 259 63.3
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 2.1e-85 319.7 277 58.8
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 1.2e-80 303.9 193 76.7
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 6.0e-80 301.6 293 56.7
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 2.3e-79 299.7 227 67.0
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 8.6e-79 297.7 193 74.1
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 1.8e-76 290.0 255 60.8
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 2.0e-75 286.6 293 54.6
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 1.7e-74 283.5 292 56.2
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 3.2e-73 279.3 329 51.4
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 2.7e-72 276.2 329 51.7
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 6.0e-72 275.0 294 53.7
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 1.3e-71 273.9 301 53.5
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 8.6e-71 271.2 298 51.7
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 2.5e-70 269.6 273 53.8
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 3.3e-70 269.2 267 55.8
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 3.6e-69 265.8 284 52.8
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 4.0e-68 262.3 290 52.4
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 6.9e-68 261.5 259 56.0
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 1.5e-67 260.4 278 48.9
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 1.9e-65 253.4 268 52.6
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 2.3e-63 246.5 296 50.3
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 1.3e-61 240.7 314 50.6
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 1.6e-61 240.4 274 52.6
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 2.9e-58 229.6 163 69.9
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.1e-52 211.1 152 68.4
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 1.8e-52 210.3 193 58.5
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 7.6e-51 204.9 315 42.5
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 1.8e-47 193.7 279 41.2
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 3.9e-47 192.6 255 43.9
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 3.8e-42 176.0 235 44.7
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.6e-37 160.6 152 55.3
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 2.2e-37 160.2 270 38.1
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 1.9e-33 147.1 81 84.0
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 4.2e-33 146.0 118 62.7
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 6.9e-28 128.6 149 52.3
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 2.2e-26 123.6 126 53.2
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 3.6e-24 116.3 100 61.0
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 3.4e-19 99.8 91 60.4
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 2.0e-14 84.0 64 65.6
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 2.2e-13 80.5 80 53.8
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 2.8e-13 80.1 39 87.2
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 1.4e-12 77.8 187 30.5
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 5.9e-11 72.4 76 55.3
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 1.1e-09 68.2 37 83.8
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 1.1e-09 68.2 37 83.8
RcHm_v2.0_Chr5g0066691 Rosa chinensis HOM05D005868 ORTHO05D006964 3.0e-07 60.1 37 78.4
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 4.0e-07 59.7 35 77.1
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 4.4e-06 56.2 38 73.7
RcHm_v2.0_Chr7g0205611 Rosa chinensis HOM05D005868 ORTHO05D006964 7.5e-06 55.5 37 70.3
Solyc01g057003.1 Solanum lycopersicum HOM05D005868 ORTHO05D006964 7.5e-06 55.5 61 45.9


User provided reference genes

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