Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25526 Corylus avellana HOM05D000117 ORTHO05D004016 4.6e-123 444.5 216 100.0
Cfa003413 Carpinus fangiana HOM05D000117 ORTHO05D004016 3.0e-82 308.9 248 68.5
CiPaw.03G247300 Carya illinoinensis HOM05D000117 ORTHO05D004016 5.1e-53 211.8 246 51.6
QL02p089640 Quercus lobata HOM05D000117 ORTHO05D004016 2.3e-50 203.0 248 51.6
Potri.006G066600 Populus trichocarpa HOM05D000117 ORTHO05D004016 3.2e-39 166.0 238 41.6
Sabra06G0049500 Salix brachista HOM05D000117 ORTHO05D004016 7.8e-38 161.4 235 43.0
Prupe.7G247500 Prunus persica HOM05D000117 ORTHO05D004016 2.3e-37 159.8 247 42.9
Dinv41484 Davidia involucrata HOM05D000117 ORTHO05D004016 1.8e-34 150.2 227 44.1
Potri.018G127800 Populus trichocarpa HOM05D000117 ORTHO05D004016 6.9e-34 148.3 238 39.5
Sabra18G0108500 Salix brachista HOM05D000117 ORTHO05D004016 2.0e-33 146.7 236 39.4
TAR636G3132 Trochodendron aralioides HOM05D000117 ORTHO05D004016 3.4e-33 146.0 233 42.5
Atru.chr7.1110 Acer truncatum HOM05D000117 ORTHO05D004016 1.7e-32 143.7 243 42.4
Dinv36489 Davidia involucrata HOM05D001124 ORTHO05D001004 4.9e-32 142.1 237 40.1
Dinv18212 Davidia involucrata HOM05D000117 ORTHO05D004016 6.4e-32 141.7 235 37.9
Dinv30128 Davidia involucrata HOM05D000117 ORTHO05D004016 6.4e-32 141.7 235 37.9
CiPaw.04G174100 Carya illinoinensis HOM05D000117 ORTHO05D004016 1.4e-31 140.6 196 46.9
Actinidia38728 Actinidia chinensis HOM05D000117 ORTHO05D004016 2.7e-30 136.3 237 37.1
Dinv08637 Davidia involucrata HOM05D000117 ORTHO05D004016 3.9e-29 132.5 235 37.0
Nn8g39513 Nelumbo nucifera HOM05D000117 ORTHO05D004016 8.7e-29 131.3 252 34.1
RcHm_v2.0_Chr2g0087791 Rosa chinensis HOM05D000117 ORTHO05D004016 1.1e-28 131.0 235 39.1
Manes.14G115100 Manihot esculenta HOM05D000117 ORTHO05D004016 2.5e-28 129.8 252 36.9
Actinidia26378 Actinidia chinensis HOM05D000117 ORTHO05D004016 5.6e-28 128.6 233 37.8
MD02G1027600 Malus domestica HOM05D000117 ORTHO05D004016 5.6e-28 128.6 263 34.6
vmacro06148 Vaccinium macrocarpon HOM05D000117 ORTHO05D004016 1.3e-27 127.5 230 39.1
CANSAT11G0432 Cannabis sativa HOM05D000117 ORTHO05D004016 4.8e-27 125.6 246 37.4
Duzib168G0070 Durio zibethinus HOM05D000117 ORTHO05D004016 1.1e-26 124.4 253 35.2
Thecc.09G130600 Theobroma cacao HOM05D000117 ORTHO05D004016 1.1e-26 124.4 249 36.1
Manes.06G048600 Manihot esculenta HOM05D000117 ORTHO05D004016 1.8e-26 123.6 244 36.5
Hma1.2p1_0497F.1_g166290 Hydrangea macrophylla HOM05D000117 ORTHO05D004016 3.1e-26 122.9 249 37.8
FAN19G3086 Fragaria x ananassa HOM05D000117 ORTHO05D004016 9.0e-26 121.3 237 37.1
Nn2g12093 Nelumbo nucifera HOM05D000117 ORTHO05D004016 9.0e-26 121.3 242 36.0
FAN28G1458 Fragaria x ananassa HOM05D000117 ORTHO05D004016 1.5e-25 120.6 236 37.3
FAN23G3146 Fragaria x ananassa HOM05D000117 ORTHO05D004016 2.0e-25 120.2 236 37.3
FAN26G2042 Fragaria x ananassa HOM05D000117 ORTHO05D004016 2.6e-25 119.8 235 37.0
Ciclev10008935m.g Citrus clementina HOM05D000117 ORTHO05D004016 3.4e-25 119.4 272 34.6
FvH4_1g02700 Fragaria vesca HOM05D000117 ORTHO05D004016 4.5e-25 119.0 237 37.6
Duzib168G0601 Durio zibethinus HOM05D000054 ORTHO05D008307 7.6e-25 118.2 246 35.4
Gohir.A05G053500 Gossypium hirsutum HOM05D000117 ORTHO05D004016 9.9e-25 117.9 234 35.9
Gorai.001G043900 Gossypium raimondii HOM05D000117 ORTHO05D004016 9.9e-25 117.9 237 35.4
MD15G1169100 Malus domestica HOM05D000117 ORTHO05D004016 1.7e-24 117.1 270 34.4
Gohir.D07G041500 Gossypium hirsutum HOM05D000117 ORTHO05D004016 2.9e-24 116.3 240 35.4
Gorai.009G058600 Gossypium raimondii HOM05D000117 ORTHO05D004016 3.8e-24 115.9 235 35.3
QL02p021548 Quercus lobata HOM05D000117 ORTHO05D004016 3.8e-24 115.9 238 37.4
Potri.006G255200 Populus trichocarpa HOM05D000117 ORTHO05D004016 4.9e-24 115.5 241 34.0
Rhsim03G0250500 Rhododendron simsii HOM05D000117 ORTHO05D004016 1.1e-23 114.4 249 34.9
Duzib187G0358 Durio zibethinus HOM05D000117 ORTHO05D004016 3.2e-23 112.8 253 33.6
Gohir.D05G016100 Gossypium hirsutum HOM05D000117 ORTHO05D004016 4.2e-23 112.5 261 35.2
Prupe.1G481700 Prunus persica HOM05D000117 ORTHO05D004016 7.1e-23 111.7 247 34.8
TAR625G1017 Trochodendron aralioides HOM05D000117 ORTHO05D004016 1.2e-22 110.9 236 33.9
Cc06_g08150 Coffea canephora HOM05D000117 ORTHO05D004016 2.1e-22 110.2 236 34.7
Gohir.A05G014900 Gossypium hirsutum HOM05D000117 ORTHO05D004016 2.7e-22 109.8 259 34.7
Gorai.009G016200 Gossypium raimondii HOM05D000117 ORTHO05D004016 4.6e-22 109.0 258 34.9
PSO170G3805 Papaver somniferum HOM05D000117 ORTHO05D004016 5.1e-21 105.5 274 32.5
EL10Ac8g18708 Beta vulgaris HOM05D000117 ORTHO05D004016 1.1e-20 104.4 225 35.1
GSVIVG01035866001 Vitis vinifera HOM05D000117 ORTHO05D004016 1.1e-20 104.4 244 34.0
PGSC0003DMG400030896 Solanum tuberosum HOM05D000117 ORTHO05D004016 1.5e-20 104.0 237 32.5
Gohir.D05G057500 Gossypium hirsutum HOM05D000117 ORTHO05D004016 1.9e-20 103.6 235 33.2
Manes.16G122601 Manihot esculenta HOM05D000117 ORTHO05D004016 3.3e-20 102.8 240 31.7
Haze_21511 Corylus avellana HOM05D000117 ORTHO05D004016 1.3e-19 100.9 246 32.5
PSO017G5528 Papaver somniferum HOM05D000117 ORTHO05D004016 2.1e-19 100.1 276 30.8
RcHm_v2.0_Chr6g0297821 Rosa chinensis HOM05D000117 ORTHO05D004016 2.8e-19 99.8 248 32.7
Duzib150G0067 Durio zibethinus HOM05D000117 ORTHO05D004016 3.7e-19 99.4 326 29.4
COL.COLO4_18864 Corchorus olitorius HOM05D000117 ORTHO05D004016 6.2e-19 98.6 236 32.2
CiPaw.07G223700 Carya illinoinensis HOM05D000117 ORTHO05D004016 8.1e-19 98.2 249 33.7
Cfa013139 Carpinus fangiana HOM05D000117 ORTHO05D004016 1.4e-18 97.4 246 31.7
Sabra06G0199500 Salix brachista HOM05D000117 ORTHO05D004016 2.4e-18 96.7 243 32.5
Actinidia22338 Actinidia chinensis HOM05D000117 ORTHO05D004016 5.3e-18 95.5 236 31.8
Cpa.g.sc217.3 Carica papaya HOM05D000117 ORTHO05D004016 6.9e-18 95.1 254 32.3
ClCG05G016850 Citrullus lanatus HOM05D000117 ORTHO05D004016 6.9e-18 95.1 245 31.8
FvH4_2g28970 Fragaria vesca HOM05D000117 ORTHO05D004016 6.9e-18 95.1 250 30.4
Peaxi162Scf00088g01715 Petunia axillaris HOM05D000117 ORTHO05D004016 1.2e-17 94.4 237 30.0
Thecc.09G023900 Theobroma cacao HOM05D000117 ORTHO05D004016 1.2e-17 94.4 227 33.5
Nitab4.5_0004887g0040 Nicotiana tabacum HOM05D000117 ORTHO05D004016 1.5e-17 94.0 235 31.5
CsaV3_1G026650 Cucumis sativus L. HOM05D000117 ORTHO05D004016 5.8e-17 92.0 254 31.1
Nitab4.5_0007881g0010 Nicotiana tabacum HOM05D000117 ORTHO05D004016 5.8e-17 92.0 241 30.7
Nitab4.5_0000028g0050 Nicotiana tabacum HOM05D000117 ORTHO05D004016 2.9e-16 89.7 239 29.7
Sopen07g003900 Solanum pennellii HOM05D000117 ORTHO05D004016 2.9e-16 89.7 236 31.4
Phvul.003G167700 Phaseolus vulgaris HOM05D000117 ORTHO05D004016 3.8e-16 89.4 249 30.5
Sed0027357 Sechium edule HOM05D000117 ORTHO05D004016 6.5e-16 88.6 247 31.2
Gohir.A07G037300 Gossypium hirsutum HOM05D000117 ORTHO05D004016 1.9e-15 87.0 132 42.4
Lj1g0003344 Lotus japonicus HOM05D000117 ORTHO05D004016 1.9e-15 87.0 242 30.2
FAN15G1324 Fragaria x ananassa HOM05D000117 ORTHO05D004016 2.5e-15 86.7 250 30.0
Hund09276 Selenicereus undatus HOM05D000117 ORTHO05D000070 3.2e-15 86.3 245 30.2
Actinidia13229 Actinidia chinensis HOM05D000117 ORTHO05D004016 4.2e-15 85.9 242 31.0
AUR62013318 Chenopodium quinoa HOM05D000117 ORTHO05D004016 5.5e-15 85.5 160 35.6
Cc08_g00560 Coffea canephora HOM05D000117 ORTHO05D004016 5.5e-15 85.5 176 31.8
VMungo1309G1431 Vigna mungo HOM05D000117 ORTHO05D004016 5.5e-15 85.5 240 28.3
GSVIVG01015573001 Vitis vinifera HOM05D000117 ORTHO05D004016 5.5e-15 85.5 186 34.4
CAN.G1230.5 Capsicum annuum HOM05D000117 ORTHO05D004016 9.3e-15 84.7 245 29.0
Sopen06g024500 Solanum pennellii HOM05D000117 ORTHO05D004016 9.3e-15 84.7 242 28.1
FAN27G0317 Fragaria x ananassa HOM05D000117 ORTHO05D004016 2.1e-14 83.6 167 34.7
Peaxi162Scf00643g00021 Petunia axillaris HOM05D000117 ORTHO05D004016 2.1e-14 83.6 239 28.0
CSS0019988 Camellia sinensis var. sinensis HOM05D000117 ORTHO05D004016 2.7e-14 83.2 208 30.3
TWI63G1260 Tripterygium wilfordii HOM05D000117 ORTHO05D004016 3.5e-14 82.8 242 29.3
Glyma.04G066300 Glycine max HOM05D000117 ORTHO05D004016 4.6e-14 82.4 241 28.6
Nitab4.5_0000209g0290 Nicotiana tabacum HOM05D000117 ORTHO05D004016 4.6e-14 82.4 221 31.2
Glyma.06G067700 Glycine max HOM05D000117 ORTHO05D004016 6.0e-14 82.0 242 27.7
Medtr4g115075 Medicago truncatula HOM05D000117 ORTHO05D004016 6.0e-14 82.0 227 29.1
MELO3C003701.2 Cucumis melo HOM05D000117 ORTHO05D004016 1.3e-13 80.9 239 28.0
FAN24G0168 Fragaria x ananassa HOM05D000054 ORTHO05D008307 1.3e-13 80.9 167 34.7
CsaV3_3G046370 Cucumis sativus L. HOM05D000117 ORTHO05D004016 1.8e-13 80.5 239 28.0
Lsat_1_v5_gn_7_44161 Lactuca sativa HOM05D000117 ORTHO05D004016 1.8e-13 80.5 183 33.3
TPR.G3144 Trifolium pratense HOM05D000117 ORTHO05D004016 2.3e-13 80.1 235 28.5
TWI32G1278 Tripterygium wilfordii HOM05D000117 ORTHO05D004016 2.3e-13 80.1 242 29.8
Ciclev10009245m.g Citrus clementina HOM05D000117 ORTHO05D004016 3.0e-13 79.7 237 29.5
Hund26547 Selenicereus undatus HOM05D000117 ORTHO05D004016 3.0e-13 79.7 242 29.3
ClCG08G013410 Citrullus lanatus HOM05D000117 ORTHO05D004016 3.9e-13 79.3 171 27.5
TPR.G26476 Trifolium pratense HOM05D000117 ORTHO05D004016 5.1e-13 79.0 219 28.3
HanXRQChr09g0243951 Helianthus annuus HOM05D000117 ORTHO05D004016 8.7e-13 78.2 149 36.9
Sabra18G0029400 Salix brachista HOM05D000117 ORTHO05D017707 8.7e-13 78.2 231 29.0
MELO3C011268.2 Cucumis melo HOM05D000117 ORTHO05D004016 1.9e-12 77.0 170 27.6
CsaV3_2G032150 Cucumis sativus L. HOM05D000117 ORTHO05D004016 1.9e-12 77.0 169 29.0
MBI15_g41547_MAGBIO Magnolia biondii HOM05D000117 ORTHO05D004016 1.9e-12 77.0 227 31.7
Medtr3g106850 Medicago truncatula HOM05D000117 ORTHO05D004016 1.9e-12 77.0 232 28.4
Peaxi162Scf00663g00032 Petunia axillaris HOM05D000117 ORTHO05D004016 2.5e-12 76.6 213 29.6
Sc18g0000410 Simmondsia chinensis HOM05D000117 ORTHO05D004016 2.5e-12 76.6 253 31.6
Solyc08g021820.3 Solanum lycopersicum HOM05D000117 ORTHO05D004016 2.5e-12 76.6 242 25.6
Ah.09g225050 Amaranthus hybridus HOM05D000117 ORTHO05D004016 3.3e-12 76.3 257 27.6
PGSC0003DMG400013765 Solanum tuberosum HOM05D000117 ORTHO05D004016 3.3e-12 76.3 240 25.0
Aqoxy7G02294 Aquilegia oxysepala HOM05D000117 ORTHO05D004016 4.3e-12 75.9 199 29.1
MSTRG.26409 Avicennia marina HOM05D000117 ORTHO05D004016 9.6e-12 74.7 210 29.5
DCAR_017798 Daucus carota HOM05D000117 ORTHO05D004016 9.6e-12 74.7 195 34.4
Eucgr.C01734 Eucalyptus grandis HOM05D000117 ORTHO05D004016 9.6e-12 74.7 244 27.9
SalBow6G2512 Salvia bowleyana HOM05D000117 ORTHO05D004016 1.3e-11 74.3 176 31.2
Solyc06g066020.3 Solanum lycopersicum HOM05D000117 ORTHO05D004016 1.3e-11 74.3 245 27.8
Lj4g0010977 Lotus japonicus HOM05D000117 ORTHO05D004016 1.6e-11 73.9 219 29.2
Lalb_Chr13g0301661 Lupinus albus HOM05D000117 ORTHO05D004016 2.8e-11 73.2 251 29.5
Sopen08g009000 Solanum pennellii HOM05D000117 ORTHO05D004016 2.8e-11 73.2 242 24.8
CAN.G138.3 Capsicum annuum HOM05D000117 ORTHO05D004016 4.8e-11 72.4 203 30.0
Migut.E01803 Erythranthe guttata HOM05D000117 ORTHO05D004016 6.3e-11 72.0 240 24.6
Psat0s594g0080 Pisum sativum HOM05D000117 ORTHO05D004016 6.3e-11 72.0 164 31.1
Cpa.g.c44394 Carica papaya HOM05D000117 ORTHO05D004016 1.1e-10 71.2 146 37.7
Oeu012625.1 Olea europaea HOM05D000117 ORTHO05D004016 3.1e-10 69.7 205 32.2
CiPaw.08G010800 Carya illinoinensis HOM05D000117 ORTHO05D004016 4.1e-10 69.3 252 27.4
Eucgr.C01373 Eucalyptus grandis HOM05D000117 ORTHO05D004016 4.1e-10 69.3 129 38.0
Glyma.13G159000 Glycine max HOM05D000117 ORTHO05D004016 4.1e-10 69.3 245 27.3
AUR62011167 Chenopodium quinoa HOM05D000117 ORTHO05D004016 5.3e-10 68.9 167 31.7
Oeu056939.1 Olea europaea HOM05D000117 ORTHO05D004016 1.2e-09 67.8 189 30.2
Migut.K00432 Erythranthe guttata HOM05D000117 ORTHO05D004016 4.5e-09 65.9 164 29.9
MELO3C010317.2 Cucumis melo HOM05D000117 ORTHO05D004016 7.6e-09 65.1 129 40.3
Psat5g029240 Pisum sativum HOM05D000117 ORTHO05D004016 2.2e-08 63.5 129 36.4
Atru.chr7.2438 Acer truncatum HOM05D000117 ORTHO05D004016 1.1e-07 61.2 124 33.9
arahy.Tifrunner.gnm1.ann1.2A4XC9 Arachis hypogaea HOM05D000117 ORTHO05D004016 1.1e-07 61.2 128 35.9
Glyma.17G112300 Glycine max HOM05D000117 ORTHO05D004016 1.4e-07 60.8 41 61.0
COL.COLO4_35137 Corchorus olitorius HOM05D000117 ORTHO05D004016 2.5e-07 60.1 41 61.0
Sed0014797 Sechium edule HOM05D000117 ORTHO05D004016 3.2e-07 59.7 159 26.4
ECA240G0810 Erigeron canadensis HOM05D000117 ORTHO05D004016 4.2e-07 59.3 154 32.5
Hma1.2p1_0760F.1_g214250 Hydrangea macrophylla HOM05D000117 ORTHO05D000070 4.2e-07 59.3 125 29.6
SalBow1G2273 Salvia bowleyana HOM05D000117 ORTHO05D004016 4.2e-07 59.3 148 29.7
BcaC02g11416 Brassica carinata HOM05D000117 ORTHO05D000070 5.5e-07 58.9 111 34.2
C04p15810 Brassica napus HOM05D000117 ORTHO05D000070 5.5e-07 58.9 111 34.2
Psat4g039680 Pisum sativum HOM05D000117 ORTHO05D004016 5.5e-07 58.9 35 71.4
Gohir.A06G054101 Gossypium hirsutum HOM05D000117 ORTHO05D004016 9.3e-07 58.2 40 60.0
Gohir.D06G053100 Gossypium hirsutum HOM05D000117 ORTHO05D004016 9.3e-07 58.2 40 60.0
Gorai.010G062000 Gossypium raimondii HOM05D000117 ORTHO05D004016 9.3e-07 58.2 40 60.0
Lalb_Chr07g0179121 Lupinus albus HOM05D000117 ORTHO05D004016 9.3e-07 58.2 41 58.5
ClCG06G011420 Citrullus lanatus HOM05D000117 ORTHO05D004016 2.1e-06 57.0 126 37.3
Eucgr.C01732 Eucalyptus grandis HOM05D057400 ORTHO05D045321 3.6e-06 56.2 129 34.1
MSTRG.26010 Avicennia marina HOM05D000117 ORTHO05D004016 4.6e-06 55.8 246 25.2
CARHR003440 Cardamine hirsuta HOM05D000117 ORTHO05D000070 4.6e-06 55.8 41 51.2
MSTRG.11613 Avicennia marina HOM05D000117 ORTHO05D004016 6.1e-06 55.5 231 26.0
Carub.0001s0325 Capsella rubella HOM05D000117 ORTHO05D000070 7.9e-06 55.1 41 51.2
Cpa.g.sc59.6 Carica papaya HOM05D000117 ORTHO05D000070 7.9e-06 55.1 88 34.1


User provided reference genes

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