Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25522 Corylus avellana HOM05D003717 ORTHO05D004848 1.1e-173 613.2 316 100.0
Cfa003414 Carpinus fangiana HOM05D003717 ORTHO05D004848 1.8e-163 579.3 311 96.5
CiPaw.03G247500 Carya illinoinensis HOM05D003717 ORTHO05D004848 2.9e-142 508.8 314 83.4
CiPaw.04G174300 Carya illinoinensis HOM05D003717 ORTHO05D004848 5.7e-138 494.6 311 83.6
QL02p089699 Quercus lobata HOM05D003717 ORTHO05D004848 3.7e-137 491.9 314 82.8
Duzib168G1487 Durio zibethinus HOM05D003717 ORTHO05D004848 9.1e-136 487.3 313 79.6
Gohir.A06G054000 Gossypium hirsutum HOM05D003717 ORTHO05D004848 2.5e-133 479.2 311 80.1
Gorai.010G061900 Gossypium raimondii HOM05D003717 ORTHO05D004848 2.5e-133 479.2 311 79.7
Duzib187G1288 Durio zibethinus HOM05D003717 ORTHO05D004848 9.4e-133 477.2 313 80.2
GSVIVG01015579001 Vitis vinifera HOM05D003717 ORTHO05D004848 4.7e-132 474.9 317 77.0
MD02G1027400 Malus domestica HOM05D003717 ORTHO05D004848 4.0e-131 471.9 313 78.6
Gohir.D06G053000 Gossypium hirsutum HOM05D003717 ORTHO05D004848 5.2e-131 471.5 311 78.1
Dinv36486 Davidia involucrata HOM05D003717 ORTHO05D004848 2.6e-130 469.2 314 79.0
Thecc.09G130900 Theobroma cacao HOM05D003717 ORTHO05D004848 3.4e-130 468.8 313 79.6
COL.COLO4_35140 Corchorus olitorius HOM05D003717 ORTHO05D004848 1.7e-129 466.5 314 76.8
MD15G1168800 Malus domestica HOM05D003717 ORTHO05D004848 1.4e-128 463.4 314 78.0
CANSAT11G0921 Cannabis sativa HOM05D003717 ORTHO05D004848 1.6e-127 459.9 318 75.2
RcHm_v2.0_Chr2g0087771 Rosa chinensis HOM05D003717 ORTHO05D004848 2.3e-126 456.1 314 76.1
Cpa.g.sc46.33 Carica papaya HOM05D003717 ORTHO05D004848 6.6e-126 454.5 313 75.7
FAN28G2297 Fragaria x ananassa HOM05D003717 ORTHO05D004848 2.1e-124 449.5 313 74.8
FAN26G2736 Fragaria x ananassa HOM05D003717 ORTHO05D004848 2.8e-124 449.1 313 74.8
Gohir.A08G238200 Gossypium hirsutum HOM05D003717 ORTHO05D004848 2.8e-124 449.1 313 76.4
Prupe.7G247700 Prunus persica HOM05D003717 ORTHO05D004848 6.1e-124 448.0 288 79.9
ClCG11G003270 Citrullus lanatus HOM05D003717 ORTHO05D004848 4.0e-123 445.3 312 75.3
FAN19G0930 Fragaria x ananassa HOM05D003717 ORTHO05D004848 6.8e-123 444.5 313 74.4
Atru.chr7.1107 Acer truncatum HOM05D003717 ORTHO05D004848 8.9e-123 444.1 314 74.8
Manes.06G048400 Manihot esculenta HOM05D003717 ORTHO05D004848 1.2e-122 443.7 314 75.8
FvH4_1g02680 Fragaria vesca HOM05D003717 ORTHO05D004848 1.5e-122 443.4 313 74.1
FAN23G0973 Fragaria x ananassa HOM05D003717 ORTHO05D004848 1.5e-122 443.4 313 73.8
CSS0041787 Camellia sinensis var. sinensis HOM05D003717 ORTHO05D004848 2.0e-122 443.0 314 75.2
PGR142G2827 Punica granatum HOM05D003717 ORTHO05D004848 4.4e-122 441.8 315 74.9
Ciclev10007683m.g Citrus clementina HOM05D003717 ORTHO05D004848 5.7e-122 441.4 313 74.1
TWI32G0090 Tripterygium wilfordii HOM05D003717 ORTHO05D004848 8.3e-121 437.6 315 71.7
Gohir.D08G258900 Gossypium hirsutum HOM05D003717 ORTHO05D004848 1.1e-120 437.2 314 74.5
Gorai.004G276400 Gossypium raimondii HOM05D003717 ORTHO05D004848 1.8e-120 436.4 313 74.8
Gorai.009G016100 Gossypium raimondii HOM05D003717 ORTHO05D004848 2.4e-120 436.0 314 72.9
TWI63G0928 Tripterygium wilfordii HOM05D003717 ORTHO05D004848 7.0e-120 434.5 312 72.8
DCAR_014898 Daucus carota HOM05D003717 ORTHO05D004848 2.7e-119 432.6 315 72.4
Cc06_g08140 Coffea canephora HOM05D003717 ORTHO05D004848 2.9e-118 429.1 314 71.7
CsaV3_2G003070 Cucumis sativus L. HOM05D003717 ORTHO05D004848 9.5e-117 424.1 312 72.1
Lalb_Chr07g0179131 Lupinus albus HOM05D003717 ORTHO05D004848 1.2e-116 423.7 314 71.0
vmacro06150 Vaccinium macrocarpon HOM05D003717 ORTHO05D004848 2.1e-116 422.9 353 66.9
Sed0027813 Sechium edule HOM05D003717 ORTHO05D004848 8.0e-116 421.0 312 69.9
Manes.14G115300 Manihot esculenta HOM05D003717 ORTHO05D004848 2.3e-115 419.5 312 71.5
TAR625G0037 Trochodendron aralioides HOM05D003717 ORTHO05D004848 5.2e-115 418.3 323 69.3
TAR636G2912 Trochodendron aralioides HOM05D003717 ORTHO05D004848 8.9e-115 417.5 325 71.7
Oeu055968.1 Olea europaea HOM05D003717 ORTHO05D004848 4.4e-114 415.2 314 70.7
AUR62013315 Chenopodium quinoa HOM05D003717 ORTHO05D004848 1.1e-112 410.6 314 69.7
AUR62011169 Chenopodium quinoa HOM05D003717 ORTHO05D004848 7.0e-112 407.9 314 69.1
Potri.018G127500 Populus trichocarpa HOM05D003717 ORTHO05D004848 9.2e-112 407.5 316 71.2
Eucgr.C01375 Eucalyptus grandis HOM05D003717 ORTHO05D004848 4.6e-111 405.2 313 70.3
Potri.006G066300 Populus trichocarpa HOM05D003717 ORTHO05D004848 4.6e-111 405.2 316 71.5
MSTRG.6072 Avicennia marina HOM05D003717 ORTHO05D004848 6.0e-111 404.8 325 68.6
Nn2g12095 Nelumbo nucifera HOM05D003717 ORTHO05D004848 7.8e-111 404.4 323 66.6
Solyc12g009610.2 Solanum lycopersicum HOM05D003717 ORTHO05D004848 1.3e-110 403.7 312 68.9
arahy.Tifrunner.gnm1.ann1.ZHFU2E Arachis hypogaea HOM05D003717 ORTHO05D004848 2.3e-110 402.9 312 70.2
Sp6g14780 Schrenkiella parvula HOM05D003717 ORTHO05D004848 8.6e-110 401.0 300 72.3
Sopen12g004600 Solanum pennellii HOM05D003717 ORTHO05D004848 1.1e-109 400.6 312 68.3
arahy.Tifrunner.gnm1.ann1.QEV4QV Arachis hypogaea HOM05D003717 ORTHO05D004848 1.5e-109 400.2 312 70.2
Lalb_Chr12g0198081 Lupinus albus HOM05D003717 ORTHO05D004848 1.5e-109 400.2 314 68.2
Peaxi162Scf00313g00819 Petunia axillaris HOM05D003717 ORTHO05D004848 1.5e-109 400.2 327 66.7
Glyma.13G159100 Glycine max HOM05D003717 ORTHO05D004848 4.3e-109 398.7 314 71.0
Sed0019028 Sechium edule HOM05D003717 ORTHO05D004848 4.3e-109 398.7 312 67.9
Ca_06936_v3 Cicer arietinum L. HOM05D003717 ORTHO05D004848 5.6e-109 398.3 315 70.8
Ca_30465_v3 Cicer arietinum L. HOM05D003717 ORTHO05D004848 5.6e-109 398.3 315 70.8
Thhalv10012867m.g Eutrema salsugineum HOM05D003717 ORTHO05D004848 1.2e-108 397.1 300 71.0
Sc14g0000170 Simmondsia chinensis HOM05D003717 ORTHO05D004848 1.6e-108 396.7 312 67.6
Ah.14g079450 Amaranthus hybridus HOM05D003717 ORTHO05D004848 2.1e-108 396.4 314 68.8
BNapus_Darmor_BZH_scaffold_232p00030 Brassica napus HOM05D003717 ORTHO05D004848 2.8e-108 396.0 306 69.9
Psat4g040040 Pisum sativum HOM05D003717 ORTHO05D004848 4.7e-108 395.2 315 70.8
vmacro07715 Vaccinium macrocarpon HOM05D003717 ORTHO05D004848 4.7e-108 395.2 314 68.5
BcaB08g35617 Brassica carinata HOM05D003717 ORTHO05D004848 1.8e-107 393.3 305 69.2
BcaC03g14516 Brassica carinata HOM05D003717 ORTHO05D004848 1.8e-107 393.3 306 69.3
TPR.G26469 Trifolium pratense HOM05D003717 ORTHO05D004848 1.8e-107 393.3 315 69.5
Migut.J01218 Erythranthe guttata HOM05D003717 ORTHO05D004848 6.8e-107 391.3 314 68.5
Glyma.17G112200 Glycine max HOM05D003717 ORTHO05D004848 6.8e-107 391.3 314 70.1
A02p11700 Brassica napus HOM05D003717 ORTHO05D004848 1.5e-106 390.2 306 69.0
Carub.0008s1272 Capsella rubella HOM05D003717 ORTHO05D004848 1.5e-106 390.2 305 69.5
VMungo1215G1390 Vigna mungo HOM05D003717 ORTHO05D004848 2.0e-106 389.8 315 70.5
Aqoxy7G03655 Aquilegia oxysepala HOM05D003717 ORTHO05D004848 3.4e-106 389.0 328 64.3
CARHR265580 Cardamine hirsuta HOM05D003717 ORTHO05D004848 3.4e-106 389.0 300 70.7
Dinv41482 Davidia involucrata HOM05D003717 ORTHO05D004848 3.4e-106 389.0 314 68.2
MELO3C004462.2 Cucumis melo HOM05D003717 ORTHO05D004848 4.4e-106 388.7 287 71.1
MBI15_g08165_MAGBIO Magnolia biondii HOM05D003717 ORTHO05D004848 4.4e-106 388.7 316 66.8
AL8G27060 Arabidopsis lyrata HOM05D003717 ORTHO05D004848 5.8e-106 388.3 299 69.2
AT5G52580 Arabidopsis thaliana HOM05D003717 ORTHO05D004848 9.8e-106 387.5 299 69.6
BolC2t08086H Brassica oleracea HOM05D003717 ORTHO05D004848 1.3e-105 387.1 312 67.9
ECA240G3427 Erigeron canadensis HOM05D003717 ORTHO05D004848 1.7e-105 386.7 314 64.6
Nitab4.5_0006319g0050 Nicotiana tabacum HOM05D003717 ORTHO05D004848 1.7e-105 386.7 302 69.2
Nitab4.5_0001349g0040 Nicotiana tabacum HOM05D003717 ORTHO05D004848 4.9e-105 385.2 336 64.3
Rhsim01G0064300 Rhododendron simsii HOM05D003717 ORTHO05D004848 1.1e-104 384.0 355 60.3
DCAR_009320 Daucus carota HOM05D003717 ORTHO05D004848 5.4e-104 381.7 317 66.2
Lsat_1_v5_gn_7_44181 Lactuca sativa HOM05D003717 ORTHO05D004848 7.1e-104 381.3 331 62.5
THA.LOC104826549 Tarenaya hassleriana HOM05D003717 ORTHO05D004848 7.1e-104 381.3 332 65.1
Medtr4g115090 Medicago truncatula HOM05D003717 ORTHO05D004848 1.2e-103 380.6 325 68.0
SalBow6G6762 Salvia bowleyana HOM05D003717 ORTHO05D004848 2.7e-103 379.4 315 63.5
HanXRQChr09g0243961 Helianthus annuus HOM05D003717 ORTHO05D004848 4.6e-103 378.6 313 64.2
Lj4g0002653 Lotus japonicus HOM05D003717 ORTHO05D004848 5.6e-101 371.7 316 65.8
Nitab4.5_0012287g0010 Nicotiana tabacum HOM05D003717 ORTHO05D004848 5.6e-101 371.7 314 67.2
Nitab4.5_0000028g0040 Nicotiana tabacum HOM05D003717 ORTHO05D004848 1.6e-100 370.2 314 66.9
Phvul.003G167800 Phaseolus vulgaris HOM05D003717 ORTHO05D004848 2.1e-100 369.8 288 70.8
FAN03G2184 Fragaria x ananassa HOM05D003717 ORTHO05D004848 2.8e-100 369.4 324 65.7
CAN.G551.81 Capsicum annuum HOM05D003717 ORTHO05D004848 1.8e-99 366.7 287 67.2
FAN06G0971 Fragaria x ananassa HOM05D003717 ORTHO05D004848 8.9e-99 364.4 321 65.1
FAN10G3828 Fragaria x ananassa HOM05D003717 ORTHO05D004848 8.9e-99 364.4 324 65.1
BraA02t06235Z Brassica rapa HOM05D003717 ORTHO05D004848 4.4e-98 362.1 366 58.2
PSO210G7704 Papaver somniferum HOM05D003717 ORTHO05D004848 1.7e-97 360.1 325 61.2
HanXRQChr03g0063211 Helianthus annuus HOM05D003717 ORTHO05D004848 2.9e-97 359.4 313 61.7
ATR0724G026 Amborella trichopoda HOM05D003717 ORTHO05D004848 4.9e-97 358.6 328 61.0
PSO210G0578 Papaver somniferum HOM05D003717 ORTHO05D004848 3.2e-96 355.9 325 61.2
Sopen07g003880 Solanum pennellii HOM05D003717 ORTHO05D004848 9.2e-96 354.4 315 62.5
Lj7A427G45 Lonicera japonica HOM05D003717 ORTHO05D004848 2.1e-95 353.2 301 63.8
vmacro06151 Vaccinium macrocarpon HOM05D003717 ORTHO05D004848 2.7e-95 352.8 239 77.4
Hund09277 Selenicereus undatus HOM05D003717 ORTHO05D004848 5.6e-93 345.1 315 59.7
Peaxi162Scf00088g01619 Petunia axillaris HOM05D003717 ORTHO05D004848 1.6e-92 343.6 313 62.3
CAN.G778.1 Capsicum annuum HOM05D003717 ORTHO05D004848 6.2e-92 341.7 299 64.2
CDE06G0531 Ceratophyllum demersum HOM05D003717 ORTHO05D004848 2.4e-91 339.7 321 58.9
unitig_60.g25513 Utricularia gibba HOM05D003717 ORTHO05D004848 5.8e-90 335.1 314 58.0
Lsat_1_v5_gn_8_62521 Lactuca sativa HOM05D003717 ORTHO05D004848 1.3e-89 334.0 312 57.4
Actinidia21961 Actinidia chinensis HOM05D003717 ORTHO05D004848 7.3e-85 318.2 208 77.4
Aqoxy7G02295 Aquilegia oxysepala HOM05D003717 ORTHO05D004848 7.3e-85 318.2 322 55.9
Sabra06G0049200 Salix brachista HOM05D003717 ORTHO05D004848 8.1e-84 314.7 319 59.9
SGA_v2.0_scaffold229G43305 Striga asiatica HOM05D003717 ORTHO05D004848 3.2e-80 302.8 349 51.6
HPP92_010898 Vanilla planifolia HOM05D003717 ORTHO05D004848 4.6e-79 298.9 281 56.9
FvH4_7g25820 Fragaria vesca HOM05D003717 ORTHO05D004848 1.0e-78 297.7 320 56.2
SEGI_13709 Sequoiadendron giganteum HOM05D003717 ORTHO05D004848 1.3e-78 297.4 327 52.9
Zm00001eb188660 Zea mays HOM05D003717 ORTHO05D004848 6.0e-71 271.9 319 50.2
Gohir.D05G016000 Gossypium hirsutum HOM05D003717 ORTHO05D004848 1.8e-70 270.4 219 65.8
Gohir.A05G014800 Gossypium hirsutum HOM05D003717 ORTHO05D004848 3.3e-69 266.2 219 66.2
Os02g0709800 Oryza sativa ssp. japonica HOM05D003717 ORTHO05D004848 1.8e-67 260.4 300 51.7
Mapoly0045s0037 Marchantia polymorpha HOM05D003717 ORTHO05D004848 4.5e-66 255.8 294 53.4
PGSC0003DMG400001516 Solanum tuberosum HOM05D003717 ORTHO05D004848 5.1e-62 242.3 318 50.6
Lsat_1_v5_gn_5_91980 Lactuca sativa HOM05D003717 ORTHO05D004848 4.8e-60 235.7 179 63.1
Sabra18G0108200 Salix brachista HOM05D003717 ORTHO05D004848 9.0e-59 231.5 439 40.3
AagrBONN_evm.TU.Sc2ySwM_369.444 Anthoceros agrestis HOM05D003717 ORTHO05D004848 3.4e-58 229.6 254 50.8
Actinidia26375 Actinidia chinensis HOM05D003717 ORTHO05D004848 1.3e-57 227.6 141 81.6
SHI28844 Sapria himalayana HOM05D003717 ORTHO05D004848 2.9e-57 226.5 206 60.2
RcHm_v2.0_Chr7g0194011 Rosa chinensis HOM05D003717 ORTHO05D004848 1.2e-55 221.1 272 50.7
Pp3c20_14740 Physcomitrium patens HOM05D003717 ORTHO05D004848 1.6e-52 210.7 287 44.6
DCAR_015113 Daucus carota HOM05D000109 ORTHO05D000210 2.5e-45 186.8 106 81.1
DCAR_002961 Daucus carota HOM05D003717 ORTHO05D000210 5.7e-45 185.7 106 80.2
Aa31sc200G80 Aethionema arabicum HOM05D003717 ORTHO05D004848 1.7e-44 184.1 200 56.0
arahy.Tifrunner.gnm1.ann1.JNHH0Q Arachis hypogaea HOM05D003717 ORTHO05D004848 2.9e-41 173.3 115 75.7
arahy.Tifrunner.gnm1.ann1.MEAQ3W Arachis hypogaea HOM05D003717 ORTHO05D004848 1.9e-40 170.6 110 74.5
VMungo1215G2674 Vigna mungo HOM05D003717 ORTHO05D004848 6.1e-31 139.0 109 65.1
CSS0018269 Camellia sinensis var. sinensis HOM05D003717 ORTHO05D033870 3.0e-30 136.7 139 59.0
CSS0025306 Camellia sinensis var. sinensis HOM05D003717 ORTHO05D033870 3.0e-30 136.7 139 59.0
CBR_g5615 Chara braunii HOM05D003717 ORTHO05D004848 4.1e-27 126.3 121 54.5
SHI28847 Sapria himalayana HOM05D003717 ORTHO05D004848 7.7e-26 122.1 160 52.5
CBR_g5611 Chara braunii HOM05D003717 ORTHO05D004848 1.0e-22 111.7 175 42.9
Cre12.g537750 Chlamydomonas reinhardtii HOM05D003717 ORTHO05D004848 8.8e-22 108.6 266 29.7
Lsat_1_v5_gn_5_182380 Lactuca sativa HOM05D001723 ORTHO05D001706 5.4e-19 99.4 84 64.3
Aqoxy7G03099 Aquilegia oxysepala HOM05D003717 ORTHO05D021356 2.9e-17 93.6 93 53.8
Aqoxy7G03107 Aquilegia oxysepala HOM05D003717 ORTHO05D021356 2.9e-17 93.6 93 53.8
Hund26546 Selenicereus undatus HOM05D003717 ORTHO05D004848 2.9e-17 93.6 143 47.6
PRCOL_00001840 Prasinoderma coloniale HOM05D003717 ORTHO05D004848 6.5e-17 92.4 129 39.5
Aqoxy4G01575 Aquilegia oxysepala HOM05D003717 ORTHO05D021356 1.2e-15 88.2 93 53.8
Aqoxy1G03770 Aquilegia oxysepala HOM05D003717 ORTHO05D021356 4.7e-15 86.3 104 50.0
Pp3c8_12870 Physcomitrium patens HOM05D003717 ORTHO05D316723 4.9e-12 76.3 63 61.9
Actinidia26376 Actinidia chinensis HOM05D003717 ORTHO05D004848 1.8e-11 74.3 149 38.9
Pp3c8_12860 Physcomitrium patens HOM05D003717 ORTHO05D318500 1.6e-10 71.2 89 48.3


User provided reference genes

Program Settings