Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25428 Corylus avellana HOM05D000022 ORTHO05D165442 1.8e-31 138.7 71 100.0
Eucgr.E02992 Eucalyptus grandis HOM05D000022 ORTHO05D000071 8.9e-07 56.6 60 50.0
Eucgr.E03779 Eucalyptus grandis HOM05D000022 ORTHO05D000071 8.9e-07 56.6 60 50.0
A08p16120 Brassica napus HOM05D000022 ORTHO05D000071 1.2e-06 56.2 60 50.0
AL7G30310 Arabidopsis lyrata HOM05D000022 ORTHO05D000071 2.6e-06 55.1 60 50.0
AL7G30350 Arabidopsis lyrata HOM05D000022 ORTHO05D000071 2.6e-06 55.1 60 50.0
AT4G23130 Arabidopsis thaliana HOM05D000022 ORTHO05D000071 2.6e-06 55.1 60 50.0
BraA08t33583Z Brassica rapa HOM05D000022 ORTHO05D000071 3.4e-06 54.7 60 50.0
Carub.0007s1813 Capsella rubella HOM05D000022 ORTHO05D000071 3.4e-06 54.7 62 46.8
Carub.0007s2975 Capsella rubella HOM05D000022 ORTHO05D000071 3.4e-06 54.7 42 61.9
Thhalv10024603m.g Eutrema salsugineum HOM05D000022 ORTHO05D000071 3.4e-06 54.7 60 50.0
Glyma.18G219800 Glycine max HOM05D000022 ORTHO05D010537 3.4e-06 54.7 60 51.7
Glyma.20G140200 Glycine max HOM05D000022 ORTHO05D000071 3.4e-06 54.7 42 64.3
BcaC01g00812 Brassica carinata HOM05D000022 ORTHO05D000071 4.4e-06 54.3 60 50.0
A09p25530 Brassica napus HOM05D000022 ORTHO05D000071 4.4e-06 54.3 60 48.3
C03p84640 Brassica napus HOM05D000022 ORTHO05D000071 4.4e-06 54.3 60 50.0
BolC3t20752H Brassica oleracea HOM05D000022 ORTHO05D000071 4.4e-06 54.3 60 50.0
BraA09t38128Z Brassica rapa HOM05D000022 ORTHO05D000071 4.4e-06 54.3 60 48.3
Aa31LG6G5310 Aethionema arabicum HOM05D000022 ORTHO05D000071 5.8e-06 53.9 42 59.5
BcaC09g51014 Brassica carinata HOM05D000022 ORTHO05D000071 5.8e-06 53.9 60 51.7
A01p14560 Brassica napus HOM05D000022 ORTHO05D000071 5.8e-06 53.9 60 51.7
C01p18010 Brassica napus HOM05D000022 ORTHO05D000071 5.8e-06 53.9 60 51.7
Carub.0007s1812 Capsella rubella HOM05D000022 ORTHO05D000071 5.8e-06 53.9 42 61.9
CARHR230200 Cardamine hirsuta HOM05D000022 ORTHO05D000071 5.8e-06 53.9 42 61.9
Thhalv10024670m.g Eutrema salsugineum HOM05D000022 ORTHO05D000071 5.8e-06 53.9 42 64.3
Thhalv10024843m.g Eutrema salsugineum HOM05D000022 ORTHO05D000071 5.8e-06 53.9 42 61.9
Manes.16G013700 Manihot esculenta HOM05D000022 ORTHO05D000071 5.8e-06 53.9 42 64.3
Medtr6g055960 Medicago truncatula HOM05D000022 ORTHO05D010537 5.8e-06 53.9 61 49.2
CARHR230230 Cardamine hirsuta HOM05D000022 ORTHO05D000071 7.6e-06 53.5 42 61.9
Potri.018G111700 Populus trichocarpa HOM05D000741 ORTHO05D000506 7.6e-06 53.5 42 59.5
Potri.018G111800 Populus trichocarpa HOM05D000741 ORTHO05D000506 7.6e-06 53.5 42 59.5
Sp7g21260 Schrenkiella parvula HOM05D000022 ORTHO05D000071 7.6e-06 53.5 60 51.7
AT4G23240 Arabidopsis thaliana HOM05D000022 ORTHO05D000071 9.9e-06 53.1 42 61.9
BcaNung00986 Brassica carinata HOM05D000022 ORTHO05D000071 9.9e-06 53.1 60 51.7
C07p52500 Brassica napus HOM05D000022 ORTHO05D000071 9.9e-06 53.1 42 61.9
Eucgr.E03041 Eucalyptus grandis HOM05D000022 ORTHO05D000071 9.9e-06 53.1 60 48.3
FvH4_2g29545 Fragaria vesca HOM05D000013 ORTHO05D000011 9.9e-06 53.1 42 61.9
FAN24G0849 Fragaria x ananassa HOM05D000013 ORTHO05D000011 9.9e-06 53.1 42 61.9
FAN27G2941 Fragaria x ananassa HOM05D000013 ORTHO05D000011 9.9e-06 53.1 42 61.9
PSO541G0292 Papaver somniferum HOM05D000022 ORTHO05D000071 9.9e-06 53.1 42 66.7
PSO675G5520 Papaver somniferum HOM05D000022 ORTHO05D000071 9.9e-06 53.1 47 61.7
THA.LOC104814550 Tarenaya hassleriana HOM05D000022 ORTHO05D000071 9.9e-06 53.1 42 61.9


User provided reference genes

Program Settings