Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25392 Corylus avellana HOM05D003318 ORTHO05D164178 3.8e-79 298.1 153 100.0
Haze_07847 Corylus avellana HOM05D003318 ORTHO05D164064 4.4e-27 125.2 158 54.4
Cfa019154 Carpinus fangiana HOM05D003318 ORTHO05D004544 2.5e-14 82.8 48 83.3
Haze_07523 Corylus avellana HOM05D003318 ORTHO05D004544 2.5e-14 82.8 48 83.3
QL08p043380 Quercus lobata HOM05D003318 ORTHO05D004544 7.3e-14 81.3 77 58.4
QL11p012704 Quercus lobata HOM05D003318 ORTHO05D004544 9.5e-14 80.9 63 68.3
Duzib205G1868 Durio zibethinus HOM05D003318 ORTHO05D004544 8.1e-13 77.8 48 75.0
Manes.06G106300 Manihot esculenta HOM05D003318 ORTHO05D004544 1.4e-12 77.0 48 75.0
Thecc.03G014800 Theobroma cacao HOM05D003318 ORTHO05D004544 1.8e-12 76.6 48 72.9
Cpa.g.sc928.1 Carica papaya HOM05D003318 ORTHO05D004544 5.2e-12 75.1 60 63.3
ClCG01G013250 Citrullus lanatus HOM05D003318 ORTHO05D004544 5.2e-12 75.1 48 75.0
Eucgr.B00293 Eucalyptus grandis HOM05D003318 ORTHO05D004544 5.2e-12 75.1 63 63.5
GSVIVG01007720001 Vitis vinifera HOM05D003318 ORTHO05D004544 6.8e-12 74.7 48 75.0
CiPaw.11G024300 Carya illinoinensis HOM05D003318 ORTHO05D004544 8.9e-12 74.3 48 72.9
MELO3C002275.2 Cucumis melo HOM05D003318 ORTHO05D004544 8.9e-12 74.3 48 72.9
CsaV3_1G008610 Cucumis sativus L. HOM05D003318 ORTHO05D004544 8.9e-12 74.3 48 75.0
Potri.012G082700 Populus trichocarpa HOM05D003318 ORTHO05D004544 8.9e-12 74.3 48 70.8
PGR083G1815 Punica granatum HOM05D003318 ORTHO05D004544 8.9e-12 74.3 48 72.9
Sabra12G0059400 Salix brachista HOM05D003318 ORTHO05D004544 8.9e-12 74.3 48 70.8
TAR374G0007 Trochodendron aralioides HOM05D003318 ORTHO05D004544 8.9e-12 74.3 77 53.2
TAR622G0444 Trochodendron aralioides HOM05D003318 ORTHO05D004544 8.9e-12 74.3 77 53.2
Actinidia33079 Actinidia chinensis HOM05D003318 ORTHO05D004544 1.2e-11 73.9 48 75.0
CSS0041520 Camellia sinensis var. sinensis HOM05D003318 ORTHO05D004544 1.2e-11 73.9 48 75.0
MBI10_g27994_MAGBIO Magnolia biondii HOM05D003318 ORTHO05D004544 1.2e-11 73.9 85 51.8
MD06G1172000 Malus domestica HOM05D003318 ORTHO05D004544 1.2e-11 73.9 63 63.5
RcHm_v2.0_Chr6g0263061 Rosa chinensis HOM05D003318 ORTHO05D004544 1.2e-11 73.9 63 63.5
RcHm_v2.0_Chr6g0263081 Rosa chinensis HOM05D003318 ORTHO05D004544 1.2e-11 73.9 63 63.5
RcHm_v2.0_Chr7g0193331 Rosa chinensis HOM05D003318 ORTHO05D004544 1.2e-11 73.9 63 63.5
vmacro19403 Vaccinium macrocarpon HOM05D003318 ORTHO05D004544 1.2e-11 73.9 48 75.0
Aqoxy248s001 Aquilegia oxysepala HOM05D003318 ORTHO05D004544 1.5e-11 73.6 48 70.8
Aqoxy3G01070 Aquilegia oxysepala HOM05D003318 ORTHO05D004544 1.5e-11 73.6 48 70.8
Migut.O00115 Erythranthe guttata HOM05D003318 ORTHO05D004544 1.5e-11 73.6 60 63.3
FAN04G1614 Fragaria x ananassa HOM05D003318 ORTHO05D004544 1.5e-11 73.6 101 46.5
SalBow5G2274 Salvia bowleyana HOM05D003318 ORTHO05D004544 1.5e-11 73.6 60 63.3
SHI00282 Sapria himalayana HOM05D003318 ORTHO05D004544 1.5e-11 73.6 48 72.9
Aqoxy1G03320 Aquilegia oxysepala HOM05D003318 ORTHO05D004544 2.0e-11 73.2 48 70.8
CiPaw.12G028100 Carya illinoinensis HOM05D003318 ORTHO05D004544 2.0e-11 73.2 47 74.5
DCAR_016479 Daucus carota HOM05D003318 ORTHO05D004544 2.0e-11 73.2 77 54.5
Prupe.5G171400 Prunus persica HOM05D003318 ORTHO05D004544 2.0e-11 73.2 63 61.9
MSTRG.11467 Avicennia marina HOM05D003318 ORTHO05D004544 2.6e-11 72.8 63 61.9
AUR62008192 Chenopodium quinoa HOM05D003318 ORTHO05D004544 2.6e-11 72.8 60 61.7
Cc04_g12170 Coffea canephora HOM05D003318 ORTHO05D004544 2.6e-11 72.8 48 70.8
Hma1.2p1_2568F.1_g324540 Hydrangea macrophylla HOM05D003318 ORTHO05D004544 2.6e-11 72.8 48 72.9
Sed0012780 Sechium edule HOM05D003318 ORTHO05D004544 2.6e-11 72.8 48 72.9
FvH4_5g05490 Fragaria vesca HOM05D003318 ORTHO05D004544 3.4e-11 72.4 101 45.5
FAN18G0002 Fragaria x ananassa HOM05D003318 ORTHO05D004544 3.4e-11 72.4 101 45.5
Gohir.A12G275200 Gossypium hirsutum HOM05D003318 ORTHO05D004544 3.4e-11 72.4 48 68.8
Gohir.D12G275900 Gossypium hirsutum HOM05D003318 ORTHO05D004544 3.4e-11 72.4 48 68.8
Gorai.008G296400 Gossypium raimondii HOM05D003318 ORTHO05D004544 3.4e-11 72.4 48 68.8
Rhsim08G0174000 Rhododendron simsii HOM05D003318 ORTHO05D004544 3.4e-11 72.4 48 72.9
HanXRQChr09g0254931 Helianthus annuus HOM05D003318 ORTHO05D004544 4.4e-11 72.0 75 53.3
Os03g0126000 Oryza sativa ssp. japonica HOM05D003318 ORTHO05D004544 4.4e-11 72.0 48 66.7
Sabra15G0103300 Salix brachista HOM05D003318 ORTHO05D004544 4.4e-11 72.0 48 70.8
Solyc06g071550.3 Solanum lycopersicum HOM05D003318 ORTHO05D004544 4.4e-11 72.0 63 60.3
PGSC0003DMG402027084 Solanum tuberosum HOM05D003318 ORTHO05D004544 4.4e-11 72.0 63 60.3
COL.COLO4_30076 Corchorus olitorius HOM05D003318 ORTHO05D004544 5.8e-11 71.6 104 42.3
Sed0002340 Sechium edule HOM05D003318 ORTHO05D004544 5.8e-11 71.6 48 68.8
Sopen06g027840 Solanum pennellii HOM05D003318 ORTHO05D004544 5.8e-11 71.6 63 60.3
Zm00001eb403640 Zea mays HOM05D003318 ORTHO05D004544 5.8e-11 71.6 48 66.7
AL6G29090 Arabidopsis lyrata HOM05D003318 ORTHO05D004544 7.6e-11 71.2 47 70.2
AT5G17990 Arabidopsis thaliana HOM05D003318 ORTHO05D004544 7.6e-11 71.2 47 70.2
Dinv20635 Davidia involucrata HOM05D003318 ORTHO05D004544 7.6e-11 71.2 47 74.5
Dinv38569 Davidia involucrata HOM05D003318 ORTHO05D004544 7.6e-11 71.2 47 74.5
MD14G1177900 Malus domestica HOM05D003318 ORTHO05D004544 7.6e-11 71.2 63 61.9
Nn3g16817 Nelumbo nucifera HOM05D003318 ORTHO05D004544 7.6e-11 71.2 60 58.3
Sc04g0001710 Simmondsia chinensis HOM05D003318 ORTHO05D004544 7.6e-11 71.2 60 60.0
HPP92_007429 Vanilla planifolia HOM05D003318 ORTHO05D004544 7.6e-11 71.2 48 68.8
CDE06G1481 Ceratophyllum demersum HOM05D003318 ORTHO05D004544 9.9e-11 70.9 62 56.5
Lsat_1_v5_gn_4_183240 Lactuca sativa HOM05D003318 ORTHO05D004544 9.9e-11 70.9 75 52.0
Ah.02g110590 Amaranthus hybridus HOM05D003318 ORTHO05D004544 1.3e-10 70.5 59 59.3
MSTRG.23140 Avicennia marina HOM05D003318 ORTHO05D004544 1.3e-10 70.5 75 54.7
CAN.G2085.3 Capsicum annuum HOM05D003318 ORTHO05D004544 1.3e-10 70.5 63 57.1
ECA232G1375 Erigeron canadensis HOM05D003318 ORTHO05D004544 1.3e-10 70.5 63 58.7
Peaxi162Scf00689g00118 Petunia axillaris HOM05D003318 ORTHO05D004544 1.3e-10 70.5 63 57.1
TAR629G1623 Trochodendron aralioides HOM05D003318 ORTHO05D004544 1.3e-10 70.5 77 51.9
Ciclev10020016m.g Citrus clementina HOM05D003318 ORTHO05D004544 1.7e-10 70.1 104 43.3
Nitab4.5_0000003g0690 Nicotiana tabacum HOM05D003318 ORTHO05D004544 1.7e-10 70.1 63 60.3
Nitab4.5_0006198g0010 Nicotiana tabacum HOM05D003318 ORTHO05D004544 1.7e-10 70.1 63 60.3
ATR1091G089 Amborella trichopoda HOM05D003318 ORTHO05D004544 2.2e-10 69.7 62 56.5
arahy.Tifrunner.gnm1.ann1.GNW9LV Arachis hypogaea HOM05D003318 ORTHO05D004544 2.2e-10 69.7 104 41.3
AUR62030944 Chenopodium quinoa HOM05D003318 ORTHO05D004544 2.2e-10 69.7 60 60.0
Oeu016410.1 Olea europaea HOM05D003318 ORTHO05D004544 2.2e-10 69.7 63 60.3
GSVIVG01032439001 Vitis vinifera HOM05D003318 ORTHO05D004544 2.2e-10 69.7 62 58.1
Lalb_Chr08g0236611 Lupinus albus HOM05D003318 ORTHO05D004544 2.9e-10 69.3 101 43.6
Nn4g22710 Nelumbo nucifera HOM05D003318 ORTHO05D004544 2.9e-10 69.3 104 41.3
Carub.0006s1618 Capsella rubella HOM05D003318 ORTHO05D004544 3.8e-10 68.9 47 68.1
HanXRQChr09g0251391 Helianthus annuus HOM05D003318 ORTHO05D004544 3.8e-10 68.9 63 58.7
Lsat_1_v5_gn_1_28341 Lactuca sativa HOM05D003318 ORTHO05D004544 3.8e-10 68.9 63 58.7
Lj7A595G62 Lonicera japonica HOM05D003318 ORTHO05D004544 3.8e-10 68.9 77 50.6
Psat0ss3962g0480 Pisum sativum HOM05D003318 ORTHO05D004544 3.8e-10 68.9 63 55.6
arahy.Tifrunner.gnm1.ann1.XU68ZZ Arachis hypogaea HOM05D003318 ORTHO05D004544 4.9e-10 68.6 104 40.4
MSTRG.24028 Avicennia marina HOM05D003318 ORTHO05D004544 4.9e-10 68.6 76 51.3
CANSAT80G1582 Cannabis sativa HOM05D003318 ORTHO05D004544 4.9e-10 68.6 48 68.8
Haze_02771 Corylus avellana HOM05D003318 ORTHO05D163983 4.9e-10 68.6 79 55.7
Migut.H00094 Erythranthe guttata HOM05D003318 ORTHO05D004544 4.9e-10 68.6 64 54.7
FAN18G0175 Fragaria x ananassa HOM05D003318 ORTHO05D004544 4.9e-10 68.6 101 44.6
Hma1.2p1_0993F.1_g245293 Hydrangea macrophylla HOM05D003318 ORTHO05D004544 4.9e-10 68.6 77 48.1
Hma1.2p1_0999F.1_g246340 Hydrangea macrophylla HOM05D003318 ORTHO05D004544 4.9e-10 68.6 77 48.1
Nitab4.5_0001659g0170 Nicotiana tabacum HOM05D003318 ORTHO05D004544 4.9e-10 68.6 63 58.7
RcHm_v2.0_Chr6g0263071 Rosa chinensis HOM05D003318 ORTHO05D004544 4.9e-10 68.6 63 60.3
SGA_v2.0_scaffold116G32230 Striga asiatica HOM05D003318 ORTHO05D004544 4.9e-10 68.6 47 70.2
Dinv33471 Davidia involucrata HOM05D003318 ORTHO05D004544 6.4e-10 68.2 77 49.4
Lj1g0000906 Lotus japonicus HOM05D003318 ORTHO05D004544 6.4e-10 68.2 104 41.3
Haze_20461 Corylus avellana HOM05D003318 ORTHO05D165862 8.4e-10 67.8 109 43.1
Lj5A126T76 Lonicera japonica HOM05D003318 ORTHO05D004544 8.4e-10 67.8 63 60.3
Medtr3g077590 Medicago truncatula HOM05D003318 ORTHO05D004544 8.4e-10 67.8 104 41.3
Oeu023437.2 Olea europaea HOM05D003318 ORTHO05D004544 8.4e-10 67.8 48 68.8
Rhsim10G0019100 Rhododendron simsii HOM05D003318 ORTHO05D004544 8.4e-10 67.8 78 47.4
SMO353G0193 Selaginella moellendorffii HOM05D003318 ORTHO05D004544 8.4e-10 67.8 48 64.6
THA.LOC104820782 Tarenaya hassleriana HOM05D003318 ORTHO05D004544 8.4e-10 67.8 60 55.0
VMungo1309G2893 Vigna mungo HOM05D003318 ORTHO05D004544 8.4e-10 67.8 104 39.4
Aa31LG11G11520 Aethionema arabicum HOM05D003318 ORTHO05D004544 1.1e-09 67.4 47 66.0
BcaC03g13562 Brassica carinata HOM05D003318 ORTHO05D004544 1.1e-09 67.4 103 41.7
A02p04620 Brassica napus HOM05D003318 ORTHO05D004544 1.1e-09 67.4 103 41.7
C02p09560 Brassica napus HOM05D003318 ORTHO05D004544 1.1e-09 67.4 103 41.7
BolC2t06863H Brassica oleracea HOM05D003318 ORTHO05D004544 1.1e-09 67.4 103 41.7
BraA02t05423Z Brassica rapa HOM05D003318 ORTHO05D004544 1.1e-09 67.4 103 41.7
Phvul.009G177200 Phaseolus vulgaris HOM05D003318 ORTHO05D004544 1.1e-09 67.4 104 38.5
SalBow1G7854 Salvia bowleyana HOM05D003318 ORTHO05D004544 1.4e-09 67.0 48 64.6
vmacro05848 Vaccinium macrocarpon HOM05D003318 ORTHO05D004544 1.4e-09 67.0 77 48.1
AagrBONN_evm.TU.Sc2ySwM_362.2078 Anthoceros agrestis HOM05D003318 ORTHO05D004544 1.9e-09 66.6 48 66.7
BcaB05g23318 Brassica carinata HOM05D003318 ORTHO05D004544 1.9e-09 66.6 103 41.7
Thhalv10013530m.g Eutrema salsugineum HOM05D003318 ORTHO05D004544 1.9e-09 66.6 47 66.0
Sp6g26300 Schrenkiella parvula HOM05D003318 ORTHO05D004544 1.9e-09 66.6 47 66.0
Hund02756 Selenicereus undatus HOM05D003318 ORTHO05D004544 1.9e-09 66.6 48 64.6
BcaC04g18737 Brassica carinata HOM05D003318 ORTHO05D004544 2.4e-09 66.2 47 63.8
C09p59000 Brassica napus HOM05D003318 ORTHO05D004544 2.4e-09 66.2 47 63.8
BolC9t58746H Brassica oleracea HOM05D003318 ORTHO05D004544 2.4e-09 66.2 47 63.8
CAN.G1166.8 Capsicum annuum HOM05D003318 ORTHO05D004544 2.4e-09 66.2 60 60.0
Ca_16165_v3 Cicer arietinum L. HOM05D003318 ORTHO05D004544 2.4e-09 66.2 48 62.5
Glyma.04G184900 Glycine max HOM05D003318 ORTHO05D004544 2.4e-09 66.2 104 38.5
MBI16_g39220_MAGBIO Magnolia biondii HOM05D003318 ORTHO05D004544 2.4e-09 66.2 63 57.1
Nitab4.5_0002643g0020 Nicotiana tabacum HOM05D003318 ORTHO05D004544 2.4e-09 66.2 48 64.6
Cc07_g01950 Coffea canephora HOM05D003318 ORTHO05D004544 3.2e-09 65.9 63 54.0
PGSC0003DMG400018097 Solanum tuberosum HOM05D003318 ORTHO05D009063 3.2e-09 65.9 69 53.6
SGA_v2.0_scaffold481G52331 Striga asiatica HOM05D003318 ORTHO05D004544 3.2e-09 65.9 75 50.7
Atru.chr9.2499 Acer truncatum HOM05D003318 ORTHO05D004544 4.1e-09 65.5 71 52.1
CARHR195080 Cardamine hirsuta HOM05D003318 ORTHO05D004544 4.1e-09 65.5 103 40.8
DCAR_021707 Daucus carota HOM05D003318 ORTHO05D004544 4.1e-09 65.5 47 63.8
PRCOL_00005811 Prasinoderma coloniale HOM05D003318 ORTHO05D004544 5.4e-09 65.1 48 60.4
unitig_61.g26476 Utricularia gibba HOM05D003318 ORTHO05D004544 5.4e-09 65.1 47 66.0
Actinidia36099 Actinidia chinensis HOM05D003318 ORTHO05D004544 7.1e-09 64.7 63 54.0
SEGI_31346 Sequoiadendron giganteum HOM05D003318 ORTHO05D004544 7.1e-09 64.7 60 51.7
TWI14G1066 Tripterygium wilfordii HOM05D003318 ORTHO05D004544 7.1e-09 64.7 43 74.4
Nitab4.5_0002306g0030 Nicotiana tabacum HOM05D003318 ORTHO05D004544 9.2e-09 64.3 48 62.5
Peaxi162Scf00700g00534 Petunia axillaris HOM05D003318 ORTHO05D004544 9.2e-09 64.3 48 62.5
TPR.G25990 Trifolium pratense HOM05D003318 ORTHO05D004544 9.2e-09 64.3 79 46.8
BcaB08g36721 Brassica carinata HOM05D003318 ORTHO05D004544 1.2e-08 63.9 47 61.7
A10p21530 Brassica napus HOM05D003318 ORTHO05D004544 1.2e-08 63.9 47 61.7
BraA10t44214Z Brassica rapa HOM05D003318 ORTHO05D004544 1.2e-08 63.9 47 61.7
Haze_10613 Corylus avellana HOM05D003318 ORTHO05D165811 1.2e-08 63.9 46 67.4
Dinv35091 Davidia involucrata HOM05D003318 ORTHO05D004544 1.2e-08 63.9 63 55.6
Mapoly0027s0124 Marchantia polymorpha HOM05D003318 ORTHO05D004544 1.2e-08 63.9 60 51.7
PSO017G3133 Papaver somniferum HOM05D003318 ORTHO05D004544 1.2e-08 63.9 102 41.2
PSO478G3254 Papaver somniferum HOM05D003318 ORTHO05D004544 1.2e-08 63.9 102 41.2
Aa31LG5G14350 Aethionema arabicum HOM05D003318 ORTHO05D004544 2.1e-08 63.2 103 38.8
Solyc12g035190.2 Solanum lycopersicum HOM05D003318 ORTHO05D004544 2.1e-08 63.2 64 51.6
Sopen12g014750 Solanum pennellii HOM05D003318 ORTHO05D004544 2.1e-08 63.2 64 51.6
ECA247G3283 Erigeron canadensis HOM05D003318 ORTHO05D004544 2.7e-08 62.8 48 62.5
Pp3c17_16690 Physcomitrium patens HOM05D003318 ORTHO05D004544 3.5e-08 62.4 48 56.2
PGSC0003DMG400031392 Solanum tuberosum HOM05D003318 ORTHO05D004544 3.5e-08 62.4 64 50.0
FAN02G4038 Fragaria x ananassa HOM05D003318 ORTHO05D004544 6.0e-08 61.6 46 63.0


User provided reference genes

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