Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 0.0e+00 1147.9 580 100.0
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 2.4e-102 377.1 634 44.2
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 1.0e-100 371.7 631 43.7
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 8.1e-98 362.1 639 43.3
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 1.2e-96 358.2 740 39.2
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 3.8e-95 353.2 623 41.6
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 2.7e-93 347.1 629 39.7
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 3.5e-93 346.7 659 39.5
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 1.1e-91 341.7 628 40.8
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 5.6e-91 339.3 632 40.3
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 9.6e-91 338.6 630 39.5
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 3.7e-90 336.7 631 38.8
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 1.8e-89 334.3 631 39.6
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 2.4e-89 334.0 632 39.6
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 3.1e-89 333.6 637 40.0
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 4.0e-89 333.2 632 38.6
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 6.9e-89 332.4 630 38.9
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 2.0e-88 330.9 655 38.2
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 1.3e-87 328.2 616 40.6
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 1.3e-87 328.2 628 40.1
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 1.7e-87 327.8 654 38.1
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 2.2e-87 327.4 638 39.0
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 2.9e-87 327.0 650 38.8
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 8.4e-87 325.5 628 39.6
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 3.2e-86 323.6 632 38.8
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 5.5e-86 322.8 632 39.4
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 7.1e-86 322.4 637 38.9
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 2.1e-85 320.9 623 38.8
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 3.5e-85 320.1 627 39.6
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 4.6e-85 319.7 618 39.5
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 4.6e-85 319.7 618 39.5
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 6.0e-85 319.3 624 39.9
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 6.0e-85 319.3 630 37.6
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 1.3e-84 318.2 623 38.4
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 3.9e-84 316.6 647 37.1
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 8.7e-84 315.5 623 38.2
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 8.7e-84 315.5 629 38.5
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 1.1e-83 315.1 636 39.6
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 1.5e-83 314.7 633 38.9
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 1.5e-83 314.7 646 38.2
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 3.3e-83 313.5 550 39.6
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 4.3e-83 313.2 637 37.7
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 9.6e-83 312.0 647 36.9
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 9.6e-83 312.0 633 37.1
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 9.6e-83 312.0 631 37.4
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 9.6e-83 312.0 615 39.5
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 1.3e-82 311.6 646 36.8
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 1.3e-82 311.6 629 38.2
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.6e-82 311.2 629 38.2
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.6e-82 311.2 629 38.2
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 2.1e-82 310.8 638 37.9
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 2.8e-82 310.5 650 37.7
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.7e-82 310.1 629 38.0
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 8.2e-82 308.9 644 37.6
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 1.1e-81 308.5 635 36.9
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 1.8e-81 307.8 647 36.8
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 1.8e-81 307.8 647 36.8
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.8e-81 307.8 621 37.7
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 2.4e-81 307.4 634 37.5
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 6.9e-81 305.8 621 37.5
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 3.4e-80 303.5 679 36.2
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.0e-79 302.0 636 35.8
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 1.0e-79 302.0 608 38.5
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.7e-79 301.2 629 36.1
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 2.9e-79 300.4 623 36.8
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 5.0e-79 299.7 629 35.8
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 1.4e-78 298.1 607 37.7
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 1.4e-78 298.1 650 36.0
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 7.2e-78 295.8 623 36.0
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 9.3e-78 295.4 633 37.0
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 1.6e-77 294.7 596 38.1
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 2.1e-77 294.3 619 37.2
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 1.3e-76 291.6 629 36.1
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 1.5e-75 288.1 629 35.8
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 4.3e-75 286.6 634 35.8
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 7.4e-75 285.8 596 38.1
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 2.2e-74 284.3 228 66.2
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 2.8e-74 283.9 639 35.4
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.8e-73 281.2 541 39.6
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 3.1e-73 280.4 633 35.2
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 4.1e-73 280.0 549 37.5
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 5.3e-73 279.6 633 35.4
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 1.2e-72 278.5 633 35.1
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 4.5e-72 276.6 555 37.1
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 5.0e-71 273.1 627 35.1
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 8.5e-71 272.3 560 35.7
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 9.4e-70 268.9 628 34.7
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 1.6e-69 268.1 633 34.8
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 4.6e-69 266.5 228 62.7
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 2.3e-68 264.2 643 34.2
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 3.9e-68 263.5 543 36.8
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 3.9e-68 263.5 641 33.2
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.5e-67 261.5 666 34.2
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.8e-65 254.6 633 32.5
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 2.6e-64 250.8 590 33.9
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 5.0e-63 246.5 612 34.5
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 1.4e-62 245.0 586 35.7
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 1.9e-62 244.6 630 32.4
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 3.2e-62 243.8 620 31.9
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 5.5e-62 243.0 650 32.6
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 1.7e-58 231.5 622 33.6
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 6.3e-58 229.6 603 34.0
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 5.9e-56 223.0 613 31.8
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 7.2e-54 216.1 618 31.6
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 2.1e-53 214.5 228 50.0
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 2.4e-49 201.1 635 29.8
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 2.4e-49 201.1 471 35.7
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 6.5e-47 193.0 168 58.9
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 3.2e-46 190.7 548 31.8
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 8.0e-45 186.0 358 38.8
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 1.5e-43 181.8 541 29.2
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 9.8e-43 179.1 543 29.3
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 1.4e-36 158.7 209 43.1
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 2.4e-33 147.9 218 42.2
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 7.3e-30 136.3 228 34.6
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 1.7e-23 115.2 197 39.6
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 3.9e-23 114.0 161 47.2
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 2.1e-21 108.2 77 71.4
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 8.0e-21 106.3 160 45.6
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 3.4e-19 100.9 178 41.0
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 2.2e-18 98.2 120 51.7
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 6.4e-18 96.7 80 67.5
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 9.2e-17 92.8 67 68.7
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 1.3e-15 89.0 547 24.5
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 2.0e-11 75.1 140 41.4
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 1.1e-09 69.3 161 37.9
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 1.1e-09 69.3 81 49.4
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 7.8e-08 63.2 62 58.1
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 6.6e-07 60.1 145 35.2


User provided reference genes

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