Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25265 Corylus avellana HOM05D002210 ORTHO05D044813 3.2e-50 201.4 101 100.0
Cfa007269 Carpinus fangiana HOM05D002210 ORTHO05D002304 1.5e-39 166.0 86 97.7
Haze_14821 Corylus avellana HOM05D002210 ORTHO05D002304 1.5e-39 166.0 86 97.7
Haze_24323 Corylus avellana HOM05D002210 ORTHO05D002304 2.9e-35 151.8 88 90.9
QL02p072765 Quercus lobata HOM05D002210 ORTHO05D002304 3.0e-24 115.2 83 71.1
QL05p036314 Quercus lobata HOM05D002210 ORTHO05D044813 1.1e-23 113.2 95 66.3
CiPaw.04G033700 Carya illinoinensis HOM05D002210 ORTHO05D002304 7.4e-23 110.5 86 67.4
CiPaw.03G051100 Carya illinoinensis HOM05D002210 ORTHO05D002304 9.7e-23 110.2 87 70.1
Thecc.04G028600 Theobroma cacao HOM05D002210 ORTHO05D002304 3.7e-22 108.2 85 67.1
Dinv25688 Davidia involucrata HOM05D002210 ORTHO05D002304 1.1e-21 106.7 87 63.2
Duzib147G1290 Durio zibethinus HOM05D002210 ORTHO05D002304 1.8e-21 105.9 82 64.6
Potri.001G335400 Populus trichocarpa HOM05D002210 ORTHO05D002304 1.8e-21 105.9 77 71.4
Sabra16G0216500 Salix brachista HOM05D002210 ORTHO05D002304 1.2e-20 103.2 77 70.1
Gohir.A05G341100 Gossypium hirsutum HOM05D002210 ORTHO05D002304 3.4e-20 101.7 84 59.5
Gohir.D04G079300 Gossypium hirsutum HOM05D002210 ORTHO05D002304 3.4e-20 101.7 84 59.5
Gorai.012G089300 Gossypium raimondii HOM05D002210 ORTHO05D002304 3.4e-20 101.7 84 59.5
Ciclev10014505m.g Citrus clementina HOM05D002210 ORTHO05D002304 1.3e-19 99.8 83 59.0
Dinv33377 Davidia involucrata HOM05D002210 ORTHO05D002304 1.3e-19 99.8 79 65.8
Manes.15G156900 Manihot esculenta HOM05D002210 ORTHO05D002304 2.2e-19 99.0 85 62.4
ClCG11G006860 Citrullus lanatus HOM05D002210 ORTHO05D002304 3.8e-19 98.2 85 62.4
Sed0013032 Sechium edule HOM05D002210 ORTHO05D002304 1.1e-18 96.7 85 60.0
Manes.17G106900 Manihot esculenta HOM05D002210 ORTHO05D002304 2.5e-18 95.5 85 61.2
Prupe.3G300800 Prunus persica HOM05D002210 ORTHO05D002304 3.2e-18 95.1 80 63.8
RcHm_v2.0_Chr2g0174421 Rosa chinensis HOM05D002210 ORTHO05D002304 5.5e-18 94.4 86 59.3
Glyma.05G073800 Glycine max HOM05D002210 ORTHO05D002304 9.4e-18 93.6 89 52.8
Atru.chr6.2494 Acer truncatum HOM05D002210 ORTHO05D002304 2.1e-17 92.4 84 60.7
MD17G1017100 Malus domestica HOM05D002210 ORTHO05D002304 2.1e-17 92.4 81 60.5
Eucgr.J02295 Eucalyptus grandis HOM05D002210 ORTHO05D002304 2.3e-16 89.0 89 55.1
FAN02G2563 Fragaria x ananassa HOM05D002210 ORTHO05D002304 3.0e-16 88.6 86 55.8
FAN05G3837 Fragaria x ananassa HOM05D002210 ORTHO05D002304 3.9e-16 88.2 86 55.8
Glyma.19G077000 Glycine max HOM05D002210 ORTHO05D002304 5.1e-16 87.8 95 47.4
Actinidia05935 Actinidia chinensis HOM05D002210 ORTHO05D002304 6.7e-16 87.4 86 58.1
CANSAT64G1190 Cannabis sativa HOM05D002210 ORTHO05D002304 6.7e-16 87.4 101 55.4
CsaV3_6G001180 Cucumis sativus L. HOM05D002210 ORTHO05D002304 8.8e-16 87.0 89 57.3
Phvul.004G056800 Phaseolus vulgaris HOM05D002210 ORTHO05D002304 8.8e-16 87.0 87 51.7
TAR622G0873 Trochodendron aralioides HOM05D002210 ORTHO05D002304 1.1e-15 86.7 86 53.5
VMungo0464G1993 Vigna mungo HOM05D002210 ORTHO05D002304 1.1e-15 86.7 87 51.7
COL.COLO4_29288 Corchorus olitorius HOM05D002210 ORTHO05D002304 2.6e-15 85.5 86 59.3
FvH4_6g52800 Fragaria vesca HOM05D002210 ORTHO05D002304 2.6e-15 85.5 86 54.7
FAN14G0726 Fragaria x ananassa HOM05D002210 ORTHO05D002304 2.6e-15 85.5 86 54.7
Lj2g0014722 Lotus japonicus HOM05D002210 ORTHO05D002304 2.6e-15 85.5 73 57.5
Actinidia36174 Actinidia chinensis HOM05D002210 ORTHO05D002304 3.3e-15 85.1 86 59.3
Hma1.2p1_0279F.1_g112330 Hydrangea macrophylla HOM05D002210 ORTHO05D002304 3.3e-15 85.1 77 64.9
Sed0012158 Sechium edule HOM05D002210 ORTHO05D002304 7.4e-15 84.0 85 54.1
MD09G1016700 Malus domestica HOM05D002210 ORTHO05D002304 1.3e-14 83.2 82 56.1
Lalb_Chr21g0317571 Lupinus albus HOM05D002210 ORTHO05D002304 1.7e-14 82.8 89 52.8
Peaxi162Scf00700g00141 Petunia axillaris HOM05D002210 ORTHO05D002304 6.3e-14 80.9 86 52.3
MBI08_g08088_MAGBIO Magnolia biondii HOM05D002210 ORTHO05D002304 1.8e-13 79.3 92 48.9
Gohir.A11G064800 Gossypium hirsutum HOM05D002210 ORTHO05D002304 7.0e-13 77.4 80 55.0
Gorai.007G073900 Gossypium raimondii HOM05D002210 ORTHO05D002304 7.0e-13 77.4 80 55.0
Cpa.g.sc130.22 Carica papaya HOM05D002210 ORTHO05D002304 9.1e-13 77.0 83 59.0
Gohir.D11G069100 Gossypium hirsutum HOM05D002210 ORTHO05D002304 9.1e-13 77.0 80 55.0
CSS0021833 Camellia sinensis var. sinensis HOM05D002210 ORTHO05D002304 2.0e-12 75.9 87 55.2
Ca_04407_v3 Cicer arietinum L. HOM05D002210 ORTHO05D002304 2.6e-12 75.5 78 53.8
MELO3C008216.2 Cucumis melo HOM05D002210 ORTHO05D002304 2.6e-12 75.5 88 54.5
TWI56G1075 Tripterygium wilfordii HOM05D002210 ORTHO05D002304 2.6e-12 75.5 81 58.0
Sc07g0004250 Simmondsia chinensis HOM05D002210 ORTHO05D002304 1.3e-11 73.2 86 51.2
Cc07_g00490 Coffea canephora HOM05D002210 ORTHO05D002304 2.2e-11 72.4 84 51.2
Medtr6g022830 Medicago truncatula HOM05D002210 ORTHO05D002304 2.2e-11 72.4 78 51.3
Phvul.008G149500 Phaseolus vulgaris HOM05D002210 ORTHO05D002304 2.2e-11 72.4 87 50.6
Nitab4.5_0006819g0060 Nicotiana tabacum HOM05D002210 ORTHO05D002304 2.9e-11 72.0 86 47.7
Nitab4.5_0000559g0190 Nicotiana tabacum HOM05D002210 ORTHO05D002304 3.8e-11 71.6 86 47.7
TAR374G1364 Trochodendron aralioides HOM05D002210 ORTHO05D002304 3.8e-11 71.6 83 45.8
TAR629G2995 Trochodendron aralioides HOM05D002210 ORTHO05D002304 3.8e-11 71.6 86 50.0
TPR.G21077 Trifolium pratense HOM05D002210 ORTHO05D002304 5.0e-11 71.2 79 51.9
MBI11_g21379_MAGBIO Magnolia biondii HOM05D002210 ORTHO05D002304 6.5e-11 70.9 86 46.5
Medtr6g023070 Medicago truncatula HOM05D002210 ORTHO05D002304 6.5e-11 70.9 78 53.8
TAR629G0762 Trochodendron aralioides HOM05D002210 ORTHO05D002304 6.5e-11 70.9 86 48.8
Glyma.16G062700 Glycine max HOM05D002210 ORTHO05D002304 8.5e-11 70.5 88 51.1
Sopen03g001100 Solanum pennellii HOM05D002210 ORTHO05D002304 1.1e-10 70.1 88 46.6
Glyma.19G083600 Glycine max HOM05D002210 ORTHO05D002304 1.5e-10 69.7 88 50.0
VMungo1383G2007 Vigna mungo HOM05D002210 ORTHO05D002304 1.9e-10 69.3 87 48.3
PGSC0003DMG400013430 Solanum tuberosum HOM05D002210 ORTHO05D002304 2.5e-10 68.9 88 46.6
Rhsim10G0010300 Rhododendron simsii HOM05D002210 ORTHO05D002304 3.2e-10 68.6 81 51.9
Solyc03g005090.4 Solanum lycopersicum HOM05D002210 ORTHO05D002304 3.2e-10 68.6 79 49.4
Aqoxy5G03539 Aquilegia oxysepala HOM05D002210 ORTHO05D002304 9.4e-10 67.0 87 47.1
CAN.G1965.10 Capsicum annuum HOM05D002210 ORTHO05D002304 9.4e-10 67.0 88 45.5
vmacro05928 Vaccinium macrocarpon HOM05D002210 ORTHO05D002304 9.4e-10 67.0 80 52.5
Nn4g22420 Nelumbo nucifera HOM05D002210 ORTHO05D002304 1.6e-09 66.2 87 47.1
Psat1g084160 Pisum sativum HOM05D002210 ORTHO05D002304 1.6e-09 66.2 79 48.1
Lj1g0020658 Lotus japonicus HOM05D002210 ORTHO05D002304 2.7e-09 65.5 79 53.2
Lju41A48T43 Lonicera japonica HOM05D002210 ORTHO05D002304 3.6e-09 65.1 78 53.8
PGR083G1070 Punica granatum HOM05D002210 ORTHO05D002304 3.6e-09 65.1 91 48.4
Hma1.2p1_0167F.1_g073840 Hydrangea macrophylla HOM05D002210 ORTHO05D002304 1.0e-08 63.5 84 42.9
Dinv10994 Davidia involucrata HOM05D002210 ORTHO05D002304 8.8e-08 60.5 87 43.7
Nitab4.5_0001031g0110 Nicotiana tabacum HOM05D002210 ORTHO05D002304 2.0e-07 59.3 86 40.7
AT3G01750 Arabidopsis thaliana HOM05D002210 ORTHO05D002304 2.6e-07 58.9 83 44.6
Manes.12G015300 Manihot esculenta HOM05D002210 ORTHO05D002304 3.3e-07 58.5 84 44.0
PSO017G0287 Papaver somniferum HOM05D002210 ORTHO05D002304 4.4e-07 58.2 90 43.3
Hund26291 Selenicereus undatus HOM05D002210 ORTHO05D002304 4.4e-07 58.2 87 43.7
CARHR075170 Cardamine hirsuta HOM05D002210 ORTHO05D002304 5.7e-07 57.8 86 43.0
Potri.008G179100 Populus trichocarpa HOM05D002210 ORTHO05D002304 5.7e-07 57.8 88 46.6
Prupe.1G233900 Prunus persica HOM05D002210 ORTHO05D002304 5.7e-07 57.8 96 38.5
CiPaw.05G116000 Carya illinoinensis HOM05D002210 ORTHO05D002304 7.5e-07 57.4 82 42.7
Nitab4.5_0001863g0060 Nicotiana tabacum HOM05D002210 ORTHO05D002304 9.7e-07 57.0 86 39.5
PSO478G0168 Papaver somniferum HOM05D002210 ORTHO05D002304 1.3e-06 56.6 90 43.3
Thhalv10022328m.g Eutrema salsugineum HOM05D002210 ORTHO05D002304 1.7e-06 56.2 83 42.2
ECA232G3017 Erigeron canadensis HOM05D002210 ORTHO05D002304 2.2e-06 55.8 90 45.6
MD16G1111200 Malus domestica HOM05D002210 ORTHO05D002304 2.2e-06 55.8 91 37.4
Duzib187G0286 Durio zibethinus HOM05D002210 ORTHO05D002304 2.8e-06 55.5 83 44.6
arahy.Tifrunner.gnm1.ann1.48HC15 Arachis hypogaea HOM05D002210 ORTHO05D002304 4.8e-06 54.7 89 49.4
arahy.Tifrunner.gnm1.ann1.Q6RF9X Arachis hypogaea HOM05D002210 ORTHO05D002304 4.8e-06 54.7 89 49.4
PGSC0003DMG400020267 Solanum tuberosum HOM05D002210 ORTHO05D002304 8.2e-06 53.9 86 40.7


User provided reference genes

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