Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25255 Corylus avellana HOM05D007927 ORTHO05D010029 2.4e-131 472.2 245 100.0
CiPaw.04G081700 Carya illinoinensis HOM05D007927 ORTHO05D010029 8.8e-86 320.9 254 72.8
ClCG02G000450 Citrullus lanatus HOM05D007927 ORTHO05D010029 6.7e-78 294.7 252 66.7
QL10p043457 Quercus lobata HOM05D007927 ORTHO05D010029 6.7e-78 294.7 266 68.0
CsaV3_2G019410 Cucumis sativus L. HOM05D007927 ORTHO05D010029 1.1e-75 287.3 242 66.9
Cfa002902 Carpinus fangiana HOM05D007927 ORTHO05D001116 2.4e-75 286.2 180 85.0
PGR102G3035 Punica granatum HOM05D007927 ORTHO05D010029 3.2e-72 275.8 246 63.8
TAR628G1503 Trochodendron aralioides HOM05D007927 ORTHO05D010029 3.2e-72 275.8 248 64.5
FvH4_1g24440 Fragaria vesca HOM05D007927 ORTHO05D010029 6.1e-71 271.6 257 63.0
FAN19G2953 Fragaria x ananassa HOM05D007927 ORTHO05D010029 8.0e-71 271.2 258 62.8
FAN26G1905 Fragaria x ananassa HOM05D007927 ORTHO05D010029 8.0e-71 271.2 286 58.4
FAN28G0845 Fragaria x ananassa HOM05D007927 ORTHO05D010029 8.0e-71 271.2 253 63.6
Prupe.4G271700 Prunus persica HOM05D007927 ORTHO05D010029 3.0e-70 269.2 262 61.5
RcHm_v2.0_Chr2g0121541 Rosa chinensis HOM05D007927 ORTHO05D010029 3.0e-70 269.2 251 63.3
Dinv24372 Davidia involucrata HOM05D007927 ORTHO05D010029 1.3e-68 263.8 252 61.5
Nn1g06275 Nelumbo nucifera HOM05D007927 ORTHO05D010029 1.3e-68 263.8 246 62.6
FAN23G1573 Fragaria x ananassa HOM05D007927 ORTHO05D010029 1.7e-68 263.5 241 63.9
Phvul.002G272300 Phaseolus vulgaris HOM05D007927 ORTHO05D010029 1.7e-68 263.5 260 58.8
Atru.chr4.915 Acer truncatum HOM05D007927 ORTHO05D010029 4.8e-68 261.9 249 61.8
VMungo0251G0724 Vigna mungo HOM05D007927 ORTHO05D010029 4.8e-68 261.9 256 59.4
Hma1.2p1_0476F.1_g160770 Hydrangea macrophylla HOM05D007927 ORTHO05D010029 1.4e-67 260.4 255 62.0
Ciclev10002360m.g Citrus clementina HOM05D007927 ORTHO05D010029 1.8e-67 260.0 251 59.8
Eucgr.J01289 Eucalyptus grandis HOM05D007927 ORTHO05D010029 3.1e-67 259.2 248 62.1
Glyma.05G191900 Glycine max HOM05D007927 ORTHO05D010029 1.6e-66 256.9 258 58.1
Duzib264G0901 Durio zibethinus HOM05D007927 ORTHO05D010029 5.9e-66 255.0 264 58.7
MD01G1005400 Malus domestica HOM05D007927 ORTHO05D010029 5.9e-66 255.0 262 60.3
Manes.13G085601 Manihot esculenta HOM05D007927 ORTHO05D010029 7.7e-66 254.6 219 65.3
Potri.005G063600 Populus trichocarpa HOM05D007927 ORTHO05D010029 7.7e-66 254.6 250 60.0
TWI75G1488 Tripterygium wilfordii HOM05D007927 ORTHO05D010029 2.9e-65 252.7 248 62.1
MBI03_g37385_MAGBIO Magnolia biondii HOM05D007927 ORTHO05D010029 3.8e-65 252.3 238 63.9
MBI03_g42544_MAGBIO Magnolia biondii HOM05D007927 ORTHO05D010029 3.8e-65 252.3 238 63.9
Psat7g045960 Pisum sativum HOM05D007927 ORTHO05D010029 3.8e-65 252.3 241 59.8
Thecc.01G133600 Theobroma cacao HOM05D007927 ORTHO05D010029 8.5e-65 251.1 261 59.0
TPR.G37352 Trifolium pratense HOM05D007927 ORTHO05D010029 8.5e-65 251.1 209 65.6
Dinv07117 Davidia involucrata HOM05D007927 ORTHO05D010029 1.1e-64 250.8 254 59.1
COL.COLO4_35756 Corchorus olitorius HOM05D007927 ORTHO05D010029 2.5e-64 249.6 262 59.2
GSVIVG01026475001 Vitis vinifera HOM05D007927 ORTHO05D010029 7.2e-64 248.1 245 61.2
CSS0028810 Camellia sinensis var. sinensis HOM05D007927 ORTHO05D010029 9.4e-64 247.7 266 57.5
Rhsim08G0002700 Rhododendron simsii HOM05D007927 ORTHO05D010029 9.4e-64 247.7 216 63.9
Medtr8g093750 Medicago truncatula HOM05D007927 ORTHO05D010029 1.2e-63 247.3 241 58.5
vmacro18670 Vaccinium macrocarpon HOM05D007927 ORTHO05D010029 1.2e-63 247.3 234 60.3
Aqoxy5G02324 Aquilegia oxysepala HOM05D007927 ORTHO05D010029 1.6e-63 246.9 245 59.6
Lj4g0020524 Lotus japonicus HOM05D007927 ORTHO05D010029 1.4e-62 243.8 245 57.6
Gohir.D09G003800 Gossypium hirsutum HOM05D007927 ORTHO05D010029 8.8e-62 241.1 258 57.0
Cpa.g.sc42.162 Carica papaya HOM05D007927 ORTHO05D010029 2.6e-61 239.6 245 58.8
Gohir.A09G004300 Gossypium hirsutum HOM05D007927 ORTHO05D010029 3.4e-61 239.2 254 56.3
Actinidia01389 Actinidia chinensis HOM05D007927 ORTHO05D010029 4.4e-61 238.8 171 73.1
MELO3C023232.2 Cucumis melo HOM05D007927 ORTHO05D010029 5.7e-61 238.4 224 62.9
Ca_17635_v3 Cicer arietinum L. HOM05D007927 ORTHO05D010029 1.7e-60 236.9 176 69.3
ATR0584G243 Amborella trichopoda HOM05D007927 ORTHO05D010029 2.2e-60 236.5 220 60.0
CDE02G1961 Ceratophyllum demersum HOM05D007927 ORTHO05D010029 2.2e-60 236.5 244 56.1
DCAR_014334 Daucus carota HOM05D007927 ORTHO05D010029 4.8e-60 235.3 204 65.2
Lalb_Chr07g0184391 Lupinus albus HOM05D007927 ORTHO05D010029 6.3e-60 235.0 210 62.4
Lsat_1_v5_gn_5_69000 Lactuca sativa HOM05D007927 ORTHO05D010029 4.1e-59 232.3 241 55.6
Lj4A837T13 Lonicera japonica HOM05D007927 ORTHO05D010029 7.0e-59 231.5 213 62.9
HanXRQChr12g0380561 Helianthus annuus HOM05D007927 ORTHO05D010029 1.6e-58 230.3 244 57.0
Gorai.006G005200 Gossypium raimondii HOM05D007927 ORTHO05D010029 1.1e-56 224.2 250 54.8
ECA233G3055 Erigeron canadensis HOM05D007927 ORTHO05D010029 1.2e-55 220.7 244 54.5
Os12g0189700 Oryza sativa ssp. japonica HOM05D007927 ORTHO05D010029 9.8e-53 211.1 178 61.2
SEGI_35752 Sequoiadendron giganteum HOM05D007927 ORTHO05D010029 2.7e-50 203.0 199 56.8
Pp3c24_20210 Physcomitrium patens HOM05D007927 ORTHO05D010029 5.9e-50 201.8 174 61.5
AagrBONN_evm.TU.Sc2ySwM_344.4939 Anthoceros agrestis HOM05D007927 ORTHO05D010029 4.3e-48 195.7 182 57.7
Sabra05G0052800 Salix brachista HOM05D007927 ORTHO05D010029 6.4e-44 181.8 229 50.2
Mapoly0115s0058 Marchantia polymorpha HOM05D007927 ORTHO05D010029 1.2e-42 177.6 191 52.4
Sabra07G0086100 Salix brachista HOM05D007927 ORTHO05D010029 7.8e-42 174.9 104 81.7
Lj4C838G8 Lonicera japonica HOM05D007927 ORTHO05D010029 6.2e-31 138.7 213 45.1
SEGI_09554 Sequoiadendron giganteum HOM05D007927 ORTHO05D010029 1.8e-30 137.1 114 63.2
FAN19G2631 Fragaria x ananassa HOM05D007927 ORTHO05D010029 4.0e-30 136.0 180 50.6
FAN23G0137 Fragaria x ananassa HOM05D007927 ORTHO05D010029 4.6e-26 122.5 146 49.3
Cre01.g055151 Chlamydomonas reinhardtii HOM05D007927 ORTHO05D010029 6.0e-18 95.5 154 35.7
Gohir.D01G107700 Gossypium hirsutum HOM05D005170 ORTHO05D010029 1.6e-15 87.4 106 47.2
Gohir.D06G120200 Gossypium hirsutum HOM05D005170 ORTHO05D010029 2.8e-15 86.7 62 66.1
Gohir.D03G074800 Gossypium hirsutum HOM05D007927 ORTHO05D010029 3.6e-15 86.3 57 77.2
Gorai.010G138300 Gossypium raimondii HOM05D007927 ORTHO05D010029 4.7e-15 85.9 60 68.3
Sabra07G0086200 Salix brachista HOM05D007927 ORTHO05D010029 8.1e-15 85.1 146 45.9
Gohir.D09G047700 Gossypium hirsutum HOM05D007927 ORTHO05D010029 1.2e-13 81.3 47 83.0
Gorai.009G413100 Gossypium raimondii HOM05D007927 ORTHO05D010029 1.2e-13 81.3 60 65.0
FvH4_1g24060 Fragaria vesca HOM05D007927 ORTHO05D010029 2.0e-13 80.5 48 79.2
Gohir.D04G109100 Gossypium hirsutum HOM05D007927 ORTHO05D010029 8.4e-12 75.1 60 63.3
Potri.007G105401 Populus trichocarpa HOM05D007927 ORTHO05D010029 2.1e-07 60.5 125 44.8
Pp3c2_6800 Physcomitrium patens HOM05D019817 ORTHO05D016515 2.8e-07 60.1 193 25.9
PRCOL_00005335 Prasinoderma coloniale HOM05D016266 ORTHO05D019595 8.1e-07 58.5 94 29.8
Mapoly0178s0020 Marchantia polymorpha HOM05D019817 ORTHO05D016515 1.1e-06 58.2 92 33.7
SEGI_14611 Sequoiadendron giganteum HOM05D019817 ORTHO05D016515 1.8e-06 57.4 94 33.0
Gohir.D11G266900 Gossypium hirsutum HOM05D005170 ORTHO05D006985 6.9e-06 55.5 29 89.7


User provided reference genes

Program Settings