Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25135 Corylus avellana HOM05D005030 ORTHO05D006490 0.0e+00 1774.6 910 100.0
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 0.0e+00 1643.6 910 93.8
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 0.0e+00 1290.0 1041 67.2
CiPaw.03G127200 Carya illinoinensis HOM05D005030 ORTHO05D006490 0.0e+00 1152.1 827 74.0
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 0.0e+00 1137.9 923 69.7
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 0.0e+00 1102.4 910 65.6
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 0.0e+00 1095.5 915 64.7
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 6.2e-312 1074.3 937 63.4
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 2.5e-311 1072.0 913 64.3
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 6.8e-309 1063.9 914 64.2
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 1.9e-306 1055.8 912 63.8
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 4.1e-306 1054.7 978 60.6
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 3.4e-300 1035.0 921 62.5
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 1.7e-291 1006.1 912 61.5
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 3.0e-288 995.3 915 59.7
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 1.5e-287 993.0 912 60.5
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 5.2e-285 984.6 912 60.1
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 1.5e-284 983.0 912 60.4
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 4.9e-283 978.0 914 60.9
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 5.6e-279 964.5 911 59.2
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 3.6e-278 961.8 912 59.1
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 7.1e-274 947.6 910 58.2
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 2.7e-273 945.7 915 57.0
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 2.2e-267 926.0 908 56.2
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 8.4e-267 924.1 923 57.0
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 3.2e-266 922.2 908 56.6
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 8.7e-264 914.1 959 55.2
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 3.3e-263 912.1 908 55.4
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 7.4e-263 911.0 912 58.3
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 9.0e-261 904.0 909 55.0
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 2.0e-260 902.9 922 56.1
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 1.0e-259 900.6 914 56.8
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 4.9e-259 898.3 907 55.3
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 6.5e-259 897.9 960 54.7
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 1.9e-258 896.3 916 56.7
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 4.6e-257 891.7 911 56.0
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 6.7e-256 887.9 962 54.1
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 2.8e-254 882.5 907 54.9
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 1.8e-253 879.8 910 54.8
MD09G1255500 Malus domestica HOM05D005030 ORTHO05D006490 2.0e-252 876.3 923 56.4
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 1.3e-251 873.6 915 55.0
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 2.9e-251 872.5 1032 52.2
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 3.2e-250 869.0 914 56.0
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 4.2e-250 868.6 909 55.4
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 1.8e-248 863.2 909 55.1
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 6.7e-248 861.3 969 52.8
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 1.5e-247 860.1 908 53.7
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 7.7e-244 847.8 924 53.8
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 2.5e-242 842.8 946 51.9
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 2.1e-241 839.7 912 53.4
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 1.1e-239 833.9 965 50.5
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 1.7e-238 830.1 910 53.1
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 6.9e-237 824.7 927 51.2
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 1.3e-235 820.5 916 52.2
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 3.6e-233 812.4 928 50.1
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 4.4e-231 805.4 932 50.1
Cpa.g.sc42.108 Carica papaya HOM05D005030 ORTHO05D006490 2.2e-222 776.5 683 60.9
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 2.0e-220 770.0 911 49.2
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 1.0e-219 767.7 915 50.7
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 5.0e-219 765.4 920 49.3
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 1.9e-218 763.5 931 49.1
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 1.2e-217 760.8 914 49.2
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 2.0e-215 753.4 988 46.4
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 1.3e-211 740.7 918 49.9
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 2.1e-209 733.4 912 48.5
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 1.3e-206 724.2 912 48.1
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 2.2e-206 723.4 919 48.4
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 4.9e-206 722.2 932 48.7
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 3.5e-204 716.1 910 47.7
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 2.3e-203 713.4 920 47.4
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 8.0e-201 704.9 968 46.1
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 2.0e-199 700.3 907 47.3
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 7.5e-199 698.4 915 47.1
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 8.3e-198 694.9 913 46.9
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 1.1e-197 694.5 916 47.2
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 7.0e-197 691.8 909 47.6
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 1.3e-195 687.6 918 47.1
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 5.0e-195 685.6 917 46.6
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 2.1e-193 680.2 916 46.0
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 4.7e-193 679.1 908 47.4
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 6.2e-193 678.7 923 46.6
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 8.0e-193 678.3 975 44.1
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 1.4e-192 677.6 924 46.2
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 3.1e-192 676.4 946 44.6
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 1.2e-191 674.5 919 45.9
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 1.2e-191 674.5 919 45.9
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 1.2e-191 674.5 919 45.9
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 1.6e-188 664.1 909 46.1
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 2.0e-188 663.7 931 45.3
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 1.6e-185 654.1 922 45.3
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 4.9e-182 642.5 948 43.9
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 2.7e-180 636.7 881 47.0
TAR381G0402 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.2e-177 627.9 560 62.0
MSTRG.2677 Avicennia marina HOM05D005030 ORTHO05D006490 6.4e-174 615.5 600 55.0
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 5.6e-170 602.4 633 55.8
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 4.5e-159 566.2 945 40.5
CAN.G802.6 Capsicum annuum HOM05D005030 ORTHO05D006490 1.8e-144 517.7 507 55.2
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 9.0e-136 488.8 914 37.5
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 1.9e-133 481.1 657 46.3
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 7.4e-130 469.2 921 36.9
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 2.7e-124 450.7 870 37.7
SEGI_08752 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.6e-103 381.7 681 36.3
Hma1.2p1_0006F.1_g004750 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 2.4e-88 331.3 427 48.5
Os02g0784100 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 5.9e-87 326.6 238 67.2
Pp3c6_6440 Physcomitrium patens HOM05D005030 ORTHO05D006490 1.7e-78 298.5 995 28.9
Thecc.01G125300 Theobroma cacao HOM05D005030 ORTHO05D006490 2.3e-78 298.1 369 51.5
vmacro12845 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 1.2e-76 292.4 317 52.1
TAR381G0325 Trochodendron aralioides HOM05D005030 ORTHO05D006490 2.3e-75 288.1 231 66.7
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 6.2e-68 263.5 825 29.0
vmacro12844 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 9.9e-66 256.1 327 45.6
Solyc11g005690.3 Solanum lycopersicum HOM05D005030 ORTHO05D006490 6.4e-65 253.4 405 44.0
MD17G1248700 Malus domestica HOM05D005030 ORTHO05D000105 5.8e-58 230.3 312 48.7
PGSC0003DMG400025561 Solanum tuberosum HOM05D005030 ORTHO05D006490 3.1e-51 208.0 257 43.6
CiPaw.03G127600 Carya illinoinensis HOM05D005030 ORTHO05D006490 9.9e-50 203.0 159 69.2
SMO203G0163 Selaginella moellendorffii HOM05D005030 ORTHO05D006490 1.5e-42 179.1 584 28.1
Cpa.g.sc42.107 Carica papaya HOM05D005030 ORTHO05D006490 4.5e-42 177.6 194 57.2
MD17G1248600 Malus domestica HOM05D005030 ORTHO05D006490 4.9e-41 174.1 300 41.0
AagrBONN_evm.TU.Sc2ySwM_228.5700 Anthoceros agrestis HOM05D005030 ORTHO05D006490 1.1e-37 162.9 200 45.0
MSTRG.2678 Avicennia marina HOM05D005030 ORTHO05D006490 1.1e-37 162.9 281 43.4
vmacro12843 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 1.8e-35 155.6 166 54.8
SHI11439 Sapria himalayana HOM05D005030 ORTHO05D006490 8.4e-33 146.7 320 37.8
Hma1.2p1_0006F.1_g004730 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 5.5e-32 144.1 170 48.8
BcaNung06136 Brassica carinata HOM05D005030 ORTHO05D006490 1.3e-28 132.9 211 42.2
CBR_g36665 Chara braunii HOM05D005030 ORTHO05D006490 1.0e-22 113.2 403 24.8
EL10Ac6g15267 Beta vulgaris HOM05D005030 ORTHO05D006490 7.4e-21 107.1 214 40.7
Sc05g0004550 Simmondsia chinensis HOM05D005030 ORTHO05D006490 1.4e-16 92.8 85 60.0
MBI11_g38367_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 1.3e-12 79.7 69 58.0
Actinidia09824 Actinidia chinensis HOM05D005030 ORTHO05D001675 8.2e-12 77.0 137 38.7
SEGI_37730 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 8.2e-12 77.0 282 23.4
SEGI_13201 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 5.3e-11 74.3 401 23.2
SEGI_13008 Sequoiadendron giganteum HOM05D005030 ORTHO05D050943 1.1e-08 66.6 398 24.1
CiPaw.03G127100 Carya illinoinensis HOM05D005030 ORTHO05D006490 2.5e-08 65.5 33 90.9
SEGI_29284 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 2.1e-07 62.4 196 30.1
TAR376G0051 Trochodendron aralioides HOM05D005030 ORTHO05D006490 2.1e-07 62.4 116 40.5
MBI19_g06116_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D036548 2.7e-07 62.0 42 69.0
Sabra05G0049200 Salix brachista HOM05D005030 ORTHO05D006490 3.6e-07 61.6 97 43.3
MBI14_g15971_MAGBIO Magnolia biondii HOM05D037163 ORTHO05D036548 6.7e-06 57.4 36 75.0


User provided reference genes

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