Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 7.4e-39 163.3 77 100.0
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 1.7e-35 152.1 77 93.5
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 1.3e-30 136.0 76 80.3
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 8.4e-27 123.2 69 82.6
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 5.5e-26 120.6 77 74.0
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 2.7e-25 118.2 78 73.1
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 6.7e-24 113.6 74 67.6
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 3.3e-23 111.3 73 67.1
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 4.3e-23 110.9 75 69.3
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 4.3e-23 110.9 75 69.3
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 4.3e-23 110.9 75 69.3
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 3.7e-22 107.8 67 74.6
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 2.4e-21 105.1 79 67.1
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 5.3e-21 104.0 74 62.2
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 5.3e-21 104.0 78 60.3
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 9.0e-21 103.2 77 62.3
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.5e-20 102.4 74 62.2
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.5e-20 102.4 74 62.2
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 2.6e-20 101.7 77 63.6
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 3.4e-20 101.3 77 62.3
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 3.4e-20 101.3 75 62.7
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 7.6e-20 100.1 69 69.6
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 1.3e-19 99.4 78 57.7
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 3.8e-19 97.8 76 61.8
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 6.5e-19 97.1 73 64.4
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 1.1e-18 96.3 76 57.9
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 1.1e-18 96.3 66 68.2
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 1.4e-18 95.9 95 56.8
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 1.4e-18 95.9 95 56.8
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 1.4e-18 95.9 95 56.8
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 1.4e-18 95.9 83 66.3
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 2.5e-18 95.1 74 60.8
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 2.5e-18 95.1 74 60.8
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 2.5e-18 95.1 95 60.0
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 3.2e-18 94.7 95 55.8
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.2e-18 94.7 78 57.7
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 7.2e-18 93.6 78 57.7
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 7.2e-18 93.6 78 57.7
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 7.2e-18 93.6 77 59.7
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 9.3e-18 93.2 66 68.2
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 5.1e-16 87.4 77 53.2
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 6.7e-16 87.0 77 57.1
Glyma.04G215100 Glycine max HOM05D004540 ORTHO05D004852 8.7e-16 86.7 50 76.0
Lalb_Chr07g0184521 Lupinus albus HOM05D004540 ORTHO05D004852 2.5e-15 85.1 77 51.9
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 2.2e-14 82.0 83 55.4
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 2.8e-14 81.6 48 77.1
Glyma.06G151100 Glycine max HOM05D004540 ORTHO05D004852 2.8e-14 81.6 50 74.0
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 1.4e-13 79.3 46 78.3
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 3.1e-13 78.2 88 53.4
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 5.3e-13 77.4 72 56.9
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 5.3e-13 77.4 69 53.6
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 9.1e-13 76.6 79 54.4
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.2e-12 76.3 68 55.9
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 1.2e-12 76.3 77 49.4
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 2.0e-12 75.5 59 57.6
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 3.4e-12 74.7 80 50.0
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 5.9e-12 73.9 66 57.6
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 5.9e-12 73.9 75 53.3
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 1.0e-11 73.2 79 51.9
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 1.0e-11 73.2 79 51.9
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 1.3e-11 72.8 79 51.9
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 1.3e-11 72.8 79 51.9
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 2.2e-11 72.0 72 52.8
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 2.2e-11 72.0 66 56.1
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 2.9e-11 71.6 68 54.4
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 3.8e-11 71.2 77 48.1
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 3.8e-11 71.2 77 48.1
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 3.8e-11 71.2 77 48.1
DCAR_001351 Daucus carota HOM05D004540 ORTHO05D004852 5.0e-11 70.9 70 55.7
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 6.5e-11 70.5 80 47.5
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 6.5e-11 70.5 80 47.5
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 1.4e-10 69.3 76 53.9
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 1.4e-10 69.3 76 53.9
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 1.9e-10 68.9 82 48.8
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 1.9e-10 68.9 73 49.3
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 2.5e-10 68.6 67 50.7
Hma1.2p1_0483F.1_g162780 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 3.2e-10 68.2 72 50.0
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 4.2e-10 67.8 60 56.7
Phvul.007G078400 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 4.2e-10 67.8 64 54.7
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 5.5e-10 67.4 67 52.2
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 5.5e-10 67.4 76 52.6
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 5.5e-10 67.4 67 52.2
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 5.5e-10 67.4 67 52.2
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 5.5e-10 67.4 67 52.2
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 5.5e-10 67.4 76 52.6
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 5.5e-10 67.4 67 52.2
Ciclev10003011m.g Citrus clementina HOM05D004540 ORTHO05D004852 5.5e-10 67.4 77 45.5
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 5.5e-10 67.4 67 50.7
Medtr1g099210 Medicago truncatula HOM05D004540 ORTHO05D004852 5.5e-10 67.4 63 50.8
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 7.2e-10 67.0 76 48.7
Lj5g0026068 Lotus japonicus HOM05D004540 ORTHO05D004852 7.2e-10 67.0 70 48.6
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 9.4e-10 66.6 60 58.3
Glyma.16G170400 Glycine max HOM05D004540 ORTHO05D004852 1.2e-09 66.2 62 50.0
BcaC05g28580 Brassica carinata HOM05D004540 ORTHO05D004852 1.6e-09 65.9 76 52.6
C05p46830 Brassica napus HOM05D004540 ORTHO05D004852 1.6e-09 65.9 76 52.6
BolC5t33413H Brassica oleracea HOM05D004540 ORTHO05D004852 1.6e-09 65.9 76 52.6
Hma1.2p1_1454F.1_g284340 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 1.6e-09 65.9 72 48.6
Haze_17734 Corylus avellana HOM05D004540 ORTHO05D004852 2.1e-09 65.5 79 51.9
Glyma.10G226800 Glycine max HOM05D004540 ORTHO05D004852 3.6e-09 64.7 64 51.6
Glyma.20G165500 Glycine max HOM05D004540 ORTHO05D004852 3.6e-09 64.7 61 54.1
Prupe.8G024400 Prunus persica HOM05D004540 ORTHO05D004852 3.6e-09 64.7 67 52.2
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 6.1e-09 63.9 69 50.7
BcaB04g19982 Brassica carinata HOM05D004540 ORTHO05D004852 1.0e-08 63.2 67 49.3
TPR.G10141 Trifolium pratense HOM05D004540 ORTHO05D004852 1.4e-08 62.8 68 52.9
Cfa018340 Carpinus fangiana HOM05D004540 ORTHO05D004852 1.8e-08 62.4 73 53.4
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 1.8e-08 62.4 73 50.7
Phvul.004G098900 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.8e-08 62.4 64 50.0
Potri.002G070401 Populus trichocarpa HOM05D004540 ORTHO05D004852 2.3e-08 62.0 67 53.7
Migut.L00808 Erythranthe guttata HOM05D004540 ORTHO05D004852 3.0e-08 61.6 79 43.0
arahy.Tifrunner.gnm1.ann1.M3AF87 Arachis hypogaea HOM05D004540 ORTHO05D004852 3.9e-08 61.2 78 47.4
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 5.1e-08 60.8 78 44.9
MD05G1020400 Malus domestica HOM05D019963 ORTHO05D004852 5.1e-08 60.8 79 44.3
QL02p024551 Quercus lobata HOM05D004540 ORTHO05D004852 8.8e-08 60.1 69 44.9
Sabra02G0055000 Salix brachista HOM05D004540 ORTHO05D004852 8.8e-08 60.1 65 52.3
Carub.0003s1849 Capsella rubella HOM05D004540 ORTHO05D004852 1.1e-07 59.7 34 70.6
Migut.H01103 Erythranthe guttata HOM05D004540 ORTHO05D004852 1.1e-07 59.7 62 50.0
Migut.L00903 Erythranthe guttata HOM05D004540 ORTHO05D004852 2.6e-07 58.5 72 44.4
CiPaw.15G019000 Carya illinoinensis HOM05D004540 ORTHO05D004852 4.4e-07 57.8 52 57.7
BcaC04g23300 Brassica carinata HOM05D004540 ORTHO05D004852 5.7e-07 57.4 72 50.0
C09p09950 Brassica napus HOM05D004540 ORTHO05D004852 5.7e-07 57.4 72 50.0
BolC9t53903H Brassica oleracea HOM05D004540 ORTHO05D004852 5.7e-07 57.4 72 50.0
Gohir.D05G243600 Gossypium hirsutum HOM05D037961 ORTHO05D004852 7.4e-07 57.0 79 46.8
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 9.7e-07 56.6 38 68.4
BraA09t36527Z Brassica rapa HOM05D004540 ORTHO05D004852 9.7e-07 56.6 72 48.6
BcaB08g37167 Brassica carinata HOM05D004540 ORTHO05D004852 1.3e-06 56.2 30 80.0
BcaB08g37180 Brassica carinata HOM05D004540 ORTHO05D004852 1.3e-06 56.2 27 85.2
C09p67710 Brassica napus HOM05D004540 ORTHO05D004852 1.3e-06 56.2 27 85.2
BolC9t59533H Brassica oleracea HOM05D004540 ORTHO05D004852 1.3e-06 56.2 27 85.2
BcaB01g05561 Brassica carinata HOM05D004540 ORTHO05D004852 2.2e-06 55.5 81 37.0
C03p04700 Brassica napus HOM05D004540 ORTHO05D004852 2.2e-06 55.5 81 37.0
CARHR203600 Cardamine hirsuta HOM05D004540 ORTHO05D004852 2.2e-06 55.5 30 76.7
Gohir.A05G242250 Gossypium hirsutum HOM05D037961 ORTHO05D004852 2.8e-06 55.1 74 45.9
Sp6g33605 Schrenkiella parvula HOM05D004540 ORTHO05D004852 2.8e-06 55.1 30 76.7
Aa31LG3G17310 Aethionema arabicum HOM05D004540 ORTHO05D004852 3.7e-06 54.7 25 88.0
AL6G20210 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 3.7e-06 54.7 85 37.6
Gorai.009G252900 Gossypium raimondii HOM05D037961 ORTHO05D004852 3.7e-06 54.7 74 45.9
Os04g0418100 Oryza sativa ssp. japonica HOM05D047234 ORTHO05D004852 4.8e-06 54.3 47 61.7
TPR.G36647 Trifolium pratense HOM05D004540 ORTHO05D004852 6.3e-06 53.9 63 50.8
AT5G09805 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 8.2e-06 53.5 90 34.4
Carub.0006s0822 Capsella rubella HOM05D004540 ORTHO05D004852 8.2e-06 53.5 33 69.7
Glyma.02G084000 Glycine max HOM05D004540 ORTHO05D004852 8.2e-06 53.5 67 43.3


User provided reference genes

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