Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 6.4e-266 920.2 477 100.0
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 1.3e-165 587.0 326 94.5
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 3.4e-142 509.2 326 81.0
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 8.6e-138 494.6 323 80.2
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 1.5e-129 467.2 331 76.1
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 2.5e-129 466.5 329 74.5
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 2.0e-126 456.8 331 73.1
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 4.3e-121 439.1 331 70.7
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 1.4e-119 434.1 328 69.8
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 1.8e-119 433.7 321 70.4
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.3e-117 427.6 331 71.0
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.7e-117 427.2 326 69.6
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 2.9e-117 426.4 328 69.5
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 4.9e-117 425.6 321 69.2
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 1.4e-116 424.1 332 69.0
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 7.1e-116 421.8 329 67.5
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 9.3e-116 421.4 329 69.6
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 1.2e-115 421.0 328 67.4
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 1.6e-115 420.6 321 67.0
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.6e-115 420.6 333 70.0
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 2.7e-115 419.9 331 67.1
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 6.0e-115 418.7 326 69.0
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 1.0e-114 417.9 328 68.6
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 3.0e-114 416.4 326 66.6
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 1.5e-113 414.1 331 65.6
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 7.4e-113 411.8 331 65.9
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 2.4e-111 406.8 333 65.5
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 2.4e-111 406.8 328 66.2
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 4.0e-111 406.0 329 65.7
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 9.0e-111 404.8 330 66.7
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 5.8e-110 402.1 328 65.5
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 9.9e-110 401.4 324 66.0
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.9e-109 399.1 328 65.2
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.4e-108 397.5 329 65.7
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 1.4e-108 397.5 331 65.6
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.9e-108 397.1 318 62.9
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 1.9e-108 397.1 331 66.2
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 2.4e-108 396.7 326 65.0
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 2.4e-108 396.7 327 63.6
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 7.1e-108 395.2 329 66.0
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 1.2e-107 394.4 331 63.1
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 2.1e-107 393.7 327 64.2
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 2.1e-107 393.7 331 63.1
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 3.5e-107 392.9 331 63.1
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 6.0e-107 392.1 331 65.0
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 7.9e-107 391.7 321 62.3
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.0e-106 391.3 321 62.0
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 1.0e-106 391.3 333 63.7
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 3.0e-106 389.8 322 66.1
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 6.7e-106 388.7 318 61.6
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 6.7e-106 388.7 329 65.0
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 8.7e-106 388.3 364 61.5
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 1.6e-104 384.0 384 56.0
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 8.1e-104 381.7 330 63.0
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 1.1e-103 381.3 326 62.9
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 2.0e-102 377.1 328 62.5
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 3.4e-102 376.3 270 70.7
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.5e-102 375.9 322 64.3
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 5.8e-102 375.6 333 62.2
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 7.6e-102 375.2 328 61.0
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 1.7e-101 374.0 332 62.7
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 2.9e-101 373.2 326 63.2
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 8.4e-101 371.7 328 62.2
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 1.4e-100 370.9 333 61.9
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 1.2e-99 367.9 334 59.0
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 6.0e-99 365.5 329 61.1
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 3.0e-98 363.2 273 68.9
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 1.6e-96 357.5 330 58.8
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 2.1e-96 357.1 329 60.2
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 2.1e-96 357.1 331 60.1
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 2.8e-96 356.7 246 77.2
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 3.7e-96 356.3 267 69.3
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 6.3e-96 355.5 330 59.1
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 6.3e-96 355.5 331 58.3
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 1.4e-95 354.4 321 58.3
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 1.8e-95 354.0 335 57.6
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 9.0e-95 351.7 329 60.8
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 1.2e-94 351.3 330 60.0
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 1.5e-94 350.9 332 59.0
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 3.4e-94 349.7 331 60.4
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 3.4e-94 349.7 330 60.3
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 4.5e-94 349.4 321 57.6
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 4.5e-94 349.4 341 56.9
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 1.0e-93 348.2 335 56.7
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 5.0e-93 345.9 330 59.1
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 1.9e-92 344.0 322 56.5
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 1.2e-91 341.3 270 62.6
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 7.9e-91 338.6 341 56.6
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 5.1e-90 335.9 356 56.5
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 8.7e-90 335.1 336 56.2
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 1.9e-89 334.0 330 53.6
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 7.4e-89 332.0 326 51.5
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 2.8e-88 330.1 233 78.1
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 8.2e-88 328.6 306 60.5
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.8e-87 327.4 322 56.2
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 1.8e-87 327.4 336 53.9
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 5.3e-87 325.9 336 56.2
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 5.3e-87 325.9 339 51.6
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 6.9e-87 325.5 337 54.0
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 1.2e-86 324.7 323 56.7
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.5e-86 324.3 345 53.6
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 2.6e-86 323.6 327 54.1
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 2.6e-86 323.6 338 55.3
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 2.6e-86 323.6 338 55.3
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 2.6e-86 323.6 338 55.3
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 1.0e-85 321.6 249 68.7
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 1.7e-85 320.9 335 52.8
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 2.9e-85 320.1 339 51.0
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 3.8e-85 319.7 329 55.3
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 6.5e-85 318.9 339 50.7
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 4.2e-84 316.2 340 54.1
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 4.2e-84 316.2 329 52.3
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 1.0e-82 311.6 334 53.6
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 1.4e-82 311.2 378 50.0
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 1.1e-81 308.1 338 53.3
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 1.1e-81 308.1 338 53.3
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 2.0e-81 307.4 330 51.2
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 5.7e-81 305.8 330 53.6
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 7.4e-81 305.4 325 54.5
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 6.3e-80 302.4 334 52.7
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 2.4e-79 300.4 336 52.1
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 2.6e-78 297.0 335 51.9
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 7.7e-78 295.4 340 51.2
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 1.7e-77 294.3 329 54.1
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 5.0e-77 292.7 216 69.4
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 5.5e-76 289.3 330 53.6
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 1.4e-74 284.6 313 53.4
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 3.9e-74 283.1 341 51.6
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 3.9e-74 283.1 239 60.3
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 3.7e-72 276.6 341 50.7
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 8.2e-72 275.4 341 50.7
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 1.3e-69 268.1 315 50.5
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 2.2e-69 267.3 308 52.9
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 2.9e-69 266.9 324 49.4
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 1.1e-68 265.0 324 50.0
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 3.2e-68 263.5 370 46.8
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 1.4e-63 248.1 297 49.5
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 1.8e-58 231.1 256 55.1
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.0e-57 227.6 201 65.2
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 5.7e-57 226.1 201 64.2
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 5.7e-57 226.1 207 63.8
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.3e-56 224.9 201 64.7
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 8.3e-56 222.2 243 50.2
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 1.1e-55 221.9 334 43.4
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 3.5e-54 216.9 182 62.1
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 3.8e-53 213.4 162 64.2
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 8.6e-53 212.2 343 42.3
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 4.7e-51 206.5 172 66.9
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 3.0e-50 203.8 158 68.4
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 9.8e-49 198.7 289 46.4
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 1.0e-45 188.7 240 45.0
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 2.8e-43 180.6 340 40.0
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.9e-40 170.6 146 56.2
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 6.4e-40 169.5 146 65.8
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 4.6e-38 163.3 122 64.8
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 9.5e-36 155.6 134 54.5
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.7e-35 153.3 132 64.4
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 1.4e-34 151.8 142 54.2
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 1.9e-31 141.4 209 45.0
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 9.2e-31 139.0 203 48.8
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 6.0e-30 136.3 142 51.4
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 1.2e-25 122.1 102 52.9
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 1.3e-24 118.6 97 61.9
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 3.9e-21 107.1 219 34.7
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 5.2e-18 96.7 302 32.5
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 5.4e-15 86.7 60 71.7
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 3.0e-13 80.9 88 45.5
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.9e-12 78.2 51 72.5
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 1.2e-11 75.5 60 68.3
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 1.5e-09 68.6 250 30.0
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 3.5e-06 57.4 58 53.4


User provided reference genes

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