Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1694.5 830 100.0
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 1372.1 810 85.9
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 1144.0 820 72.7
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 1123.2 816 70.6
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 1.8e-255 886.3 813 57.7
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 1.8e-247 859.8 821 57.0
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 1.4e-244 850.1 808 54.5
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 2.4e-244 849.4 833 55.6
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 3.6e-240 835.5 813 54.2
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 1.8e-236 823.2 815 56.1
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 9.1e-236 820.8 799 56.1
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 1.3e-234 817.0 812 54.8
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 8.9e-231 804.3 815 53.0
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 1.8e-228 796.6 809 51.9
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 2.4e-228 796.2 815 52.5
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 2.4e-228 796.2 809 51.9
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 4.1e-228 795.4 815 52.4
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 3.5e-227 792.3 804 51.7
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 3.5e-227 792.3 815 52.3
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 3.9e-226 788.9 808 51.9
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 1.5e-225 786.9 815 52.0
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 6.8e-223 778.1 833 51.1
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 8.3e-221 771.2 818 52.7
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 1.7e-218 763.5 813 52.8
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 1.4e-215 753.8 816 52.2
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 4.4e-214 748.8 823 49.7
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 3.5e-211 739.2 806 52.5
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 3.6e-200 702.6 819 49.9
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 6.4e-197 691.8 823 48.2
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 6.6e-194 681.8 844 46.2
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 2.4e-191 673.3 821 46.8
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 6.9e-191 671.8 829 47.2
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 3.4e-190 669.5 824 46.1
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 4.9e-189 665.6 821 46.2
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 3.5e-187 659.4 821 45.4
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 7.8e-187 658.3 821 45.8
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 8.7e-186 654.8 818 47.1
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 4.3e-185 652.5 821 45.7
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 5.6e-185 652.1 826 46.6
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 9.6e-185 651.4 804 45.4
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 1.2e-182 644.4 820 44.9
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 7.6e-182 641.7 821 45.8
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 3.8e-181 639.4 817 44.7
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 2.4e-180 636.7 826 46.6
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 3.2e-180 636.3 821 45.8
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 1.6e-179 634.0 819 46.2
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 4.9e-173 612.5 815 44.2
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 7.1e-172 608.6 815 44.0
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 1.2e-171 607.8 832 43.6
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 3.9e-170 602.8 803 44.1
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 1.9e-169 600.5 813 43.1
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 9.0e-159 565.1 809 43.8
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 1.1e-156 558.1 839 41.8
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 2.5e-156 557.0 811 42.0
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 4.2e-156 556.2 806 41.9
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 1.6e-155 554.3 818 41.7
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 5.7e-153 545.8 815 41.1
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 2.2e-152 543.9 790 41.8
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 2.8e-152 543.5 818 40.8
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 1.5e-150 537.7 818 39.2
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 2.0e-150 537.3 820 40.4
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 4.7e-147 526.2 832 40.3
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 1.8e-146 524.2 803 39.2
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 4.4e-145 519.6 800 38.9
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 2.8e-144 516.9 819 38.9
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 3.1e-143 513.5 815 39.1
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 5.3e-143 512.7 803 39.4
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 2.6e-142 510.4 827 38.6
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 4.5e-142 509.6 800 39.2
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 4.5e-142 509.6 833 38.8
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 7.7e-142 508.8 832 39.9
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 1.7e-141 507.7 802 39.2
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 2.2e-141 507.3 806 39.3
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 4.2e-140 503.1 841 38.3
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 1.4e-135 488.0 799 37.8
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 2.0e-134 484.2 814 38.6
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 1.0e-133 481.9 818 37.7
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 8.5e-133 478.8 832 37.5
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 7.2e-132 475.7 798 38.3
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 1.8e-127 461.1 812 36.0
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 2.9e-125 453.8 820 36.5
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 1.9e-124 451.1 813 36.8
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 3.2e-124 450.3 911 34.2
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 6.8e-122 442.6 844 34.6
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 1.1e-119 435.3 805 35.8
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 3.1e-119 433.7 792 36.5
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 3.5e-118 430.3 447 53.0
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 4.5e-118 429.9 805 35.2
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 1.7e-117 427.9 706 36.5
Oeu054940.1 Olea europaea HOM05D004165 ORTHO05D005063 8.3e-112 409.1 661 38.6
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 4.1e-95 353.6 813 31.4
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 1.0e-93 349.0 811 32.6
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 4.0e-74 283.9 780 28.6
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 5.3e-74 283.5 788 30.8
SEGI_28346 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.8e-67 261.2 940 26.3
Os01g0182832 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 1.5e-65 255.4 707 28.7
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 3.8e-48 197.6 605 26.9
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 3.6e-38 164.5 256 39.5
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 2.8e-35 154.8 913 23.0
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 4.2e-31 141.0 784 22.8
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 8.8e-29 133.3 738 22.4
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 3.3e-28 131.3 731 22.3
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 1.2e-17 96.3 120 44.2
Cpa.g.c46795 Carica papaya HOM05D004165 ORTHO05D005063 1.5e-12 79.3 50 80.0
Lsat_1_v5_gn_3_81660 Lactuca sativa HOM05D000921 ORTHO05D002852 5.7e-12 77.4 58 62.1
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 7.5e-12 77.0 324 25.9
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 1.8e-10 72.4 59 57.6


User provided reference genes

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