Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1975.7 1003 100.0
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 1892.9 1003 96.4
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 1733.8 1004 88.1
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 1717.6 1003 87.1
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 1653.3 1005 84.2
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 1649.4 1004 83.9
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 1646.3 1004 83.7
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 1645.2 1004 83.5
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 1644.8 1004 83.7
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 1644.0 1004 84.0
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 1642.9 1004 83.4
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 1642.5 1004 83.4
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 1636.7 1003 83.1
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 1623.2 1004 82.9
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 1619.0 1006 82.5
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 1615.9 1004 82.1
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 1614.7 1005 82.8
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 1614.0 1004 82.2
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 1612.4 1004 82.4
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 1610.9 1004 82.2
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 1610.9 1004 82.5
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 1609.0 1004 82.4
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 1606.3 1004 81.9
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 1605.9 1004 82.1
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 1605.5 1004 81.9
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 1600.5 1004 81.1
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 1595.1 1004 81.6
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 1593.9 1004 81.2
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 1593.6 1005 81.3
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 1587.8 1012 80.8
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 1586.2 1004 81.4
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 1585.9 1004 81.0
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 1582.8 1005 80.8
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 1581.6 1004 80.9
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 1581.2 1004 80.9
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 1580.1 1006 81.0
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 1575.8 1004 80.5
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 1561.2 1004 79.8
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 1554.3 1005 79.3
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 1552.7 1004 78.2
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 1550.0 1004 78.2
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 1537.3 955 82.0
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 1529.6 1013 78.7
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 1517.3 1005 78.4
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 1512.7 1005 77.5
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 1505.0 1005 76.2
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 1496.5 1004 76.0
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1493.4 1002 76.1
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 1492.6 1004 76.5
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 1483.8 1005 75.1
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 1483.4 1005 75.1
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 1483.4 1005 75.1
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 1482.2 1005 75.5
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 1480.7 1007 76.5
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 1476.1 1005 74.8
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 1476.1 1005 75.3
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 1475.7 1002 75.6
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 1474.9 1005 75.1
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 1471.1 1005 74.5
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 1469.5 1011 75.0
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 1466.4 1004 75.9
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 1463.7 1006 75.0
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 1463.4 1013 74.0
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 1461.4 1008 75.3
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 1461.0 1008 74.8
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 1458.7 1013 73.8
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 1454.9 1005 74.2
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 1453.7 1005 74.5
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 1453.3 1004 75.0
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 1453.0 1005 74.2
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 1452.6 1004 76.0
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 1452.2 1004 74.4
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 1448.3 1004 74.2
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 1436.0 1006 74.4
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 1423.3 1005 72.3
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 1417.9 1005 72.9
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 1404.8 1008 71.3
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 1397.9 1012 70.8
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 1286.2 1008 66.6
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1279.2 1016 66.1
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 1255.0 852 77.0
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 1254.2 1023 64.9
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 1226.1 1013 62.9
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1214.5 860 72.7
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1191.4 964 65.7
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 1161.7 759 78.8
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1146.7 853 70.8
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 1099.3 782 73.7
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 3.0e-302 1042.0 869 63.1
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 3.0e-297 1025.4 757 72.1
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 1.1e-288 996.9 1033 52.9
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 1.1e-288 996.9 1013 54.5
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 3.5e-282 975.3 1063 50.9
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 7.3e-280 967.6 1059 50.7
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 4.9e-276 954.9 1004 55.8
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 5.8e-269 931.4 678 71.4
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 3.0e-257 892.5 1041 47.2
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.7e-242 842.8 747 60.6
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 8.3e-207 724.9 412 89.8
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 8.5e-204 714.9 441 82.1
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 2.0e-189 667.2 1176 36.9
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 4.2e-158 563.1 733 46.7
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 5.3e-145 519.6 673 45.8
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 7.4e-139 499.2 370 71.6
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 2.3e-132 477.6 327 72.8
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 1.5e-123 448.4 270 82.2
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 3.3e-123 447.2 250 88.0
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 7.4e-115 419.5 301 70.8
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 3.5e-96 357.5 217 84.8
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 1.4e-92 345.5 244 68.4
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 7.5e-75 286.6 326 50.0
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 1.2e-64 252.7 155 79.4
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 2.5e-54 218.4 153 72.5
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 9.5e-54 216.5 153 71.9
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 4.6e-48 197.6 152 65.8
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 7.8e-48 196.8 152 61.2
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 1.4e-36 159.5 118 69.5
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 6.6e-31 140.6 82 82.9
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 1.4e-28 132.9 92 72.8
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 1.4e-25 122.9 70 85.7
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 2.3e-23 115.5 86 66.3
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 6.5e-10 70.9 45 77.8


User provided reference genes

Program Settings