Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25064 Corylus avellana HOM05D000219 ORTHO05D004649 0.0e+00 1093.2 534 100.0
Cfa002771 Carpinus fangiana HOM05D000219 ORTHO05D004649 1.7e-259 899.0 570 80.9
QL06p031679 Quercus lobata HOM05D000219 ORTHO05D004649 1.6e-241 839.3 569 74.5
CiPaw.15G021800 Carya illinoinensis HOM05D000219 ORTHO05D004649 1.1e-231 806.6 563 73.2
GSVIVG01022253001 Vitis vinifera HOM05D000219 ORTHO05D004649 4.1e-205 718.4 566 64.5
Ciclev10027573m.g Citrus clementina HOM05D000219 ORTHO05D004649 1.2e-201 706.8 570 64.0
TAR625G1522 Trochodendron aralioides HOM05D000219 ORTHO05D004649 2.9e-198 695.7 564 63.5
Duzib235G0760 Durio zibethinus HOM05D000219 ORTHO05D004649 6.4e-198 694.5 564 63.3
Gorai.009G178600 Gossypium raimondii HOM05D000219 ORTHO05D004649 1.4e-197 693.3 564 62.9
CSS0031787 Camellia sinensis var. sinensis HOM05D000219 ORTHO05D004649 9.2e-197 690.6 566 61.8
Gohir.A05G170300 Gossypium hirsutum HOM05D000219 ORTHO05D004649 2.0e-196 689.5 564 62.9
Sed0023684 Sechium edule HOM05D000219 ORTHO05D004649 4.7e-193 678.3 563 60.7
CANSAT64G2196 Cannabis sativa HOM05D000219 ORTHO05D004649 6.2e-193 677.9 567 60.0
Cc07_g16490 Coffea canephora HOM05D000219 ORTHO05D004649 1.5e-191 673.3 565 59.6
TWI79G1233 Tripterygium wilfordii HOM05D000219 ORTHO05D004649 2.9e-190 669.1 565 58.8
CsaV3_6G042230 Cucumis sativus L. HOM05D000219 ORTHO05D004649 8.3e-190 667.5 563 60.2
Dinv19467 Davidia involucrata HOM05D000219 ORTHO05D004649 9.2e-189 664.1 515 65.0
Thhalv10016524m.g Eutrema salsugineum HOM05D000219 ORTHO05D004649 3.0e-187 659.1 562 60.1
COL.COLO4_16836 Corchorus olitorius HOM05D000219 ORTHO05D004649 6.6e-187 657.9 569 60.5
FvH4_2g15830 Fragaria vesca HOM05D000219 ORTHO05D004649 8.6e-187 657.5 562 60.3
ClCG01G015950 Citrullus lanatus HOM05D000219 ORTHO05D004649 1.9e-186 656.4 582 57.6
MD05G1030700 Malus domestica HOM05D000219 ORTHO05D004649 1.9e-186 656.4 562 59.3
Potri.002G233300 Populus trichocarpa HOM05D000219 ORTHO05D004649 1.9e-186 656.4 562 60.7
FAN24G0946 Fragaria x ananassa HOM05D000219 ORTHO05D004649 2.5e-186 656.0 562 60.0
Eucgr.H04885 Eucalyptus grandis HOM05D000219 ORTHO05D004649 2.1e-185 652.9 562 59.1
C04p18270 Brassica napus HOM05D000219 ORTHO05D004649 8.1e-185 651.0 562 58.2
FAN20G1304 Fragaria x ananassa HOM05D000219 ORTHO05D004649 5.2e-184 648.3 562 59.6
Carub.0004s1368 Capsella rubella HOM05D000219 ORTHO05D004649 6.8e-184 647.9 562 58.4
FAN15G1293 Fragaria x ananassa HOM05D000219 ORTHO05D004649 2.0e-183 646.4 562 59.6
Prupe.1G573900 Prunus persica HOM05D000219 ORTHO05D004649 2.0e-183 646.4 562 59.1
AL4G26840 Arabidopsis lyrata HOM05D000219 ORTHO05D004649 2.6e-183 646.0 562 57.3
Manes.11G020000 Manihot esculenta HOM05D000219 ORTHO05D004649 2.6e-183 646.0 516 63.4
BcaB02g10403 Brassica carinata HOM05D000219 ORTHO05D004649 3.4e-183 645.6 562 58.7
BcaC02g11270 Brassica carinata HOM05D000219 ORTHO05D004649 3.4e-183 645.6 562 57.8
Sabra02G0178000 Salix brachista HOM05D000219 ORTHO05D004649 3.4e-183 645.6 619 56.2
Oeu027201.4 Olea europaea HOM05D000219 ORTHO05D004649 9.9e-183 644.0 566 58.7
Actinidia39311 Actinidia chinensis HOM05D000219 ORTHO05D004649 1.3e-182 643.7 565 58.6
Carub.0004s1289 Capsella rubella HOM05D000219 ORTHO05D004649 3.7e-182 642.1 562 57.7
THA.LOC104800903 Tarenaya hassleriana HOM05D000219 ORTHO05D004649 3.7e-182 642.1 562 58.7
AUR62016924 Chenopodium quinoa HOM05D000219 ORTHO05D004649 8.3e-182 641.0 531 60.1
BolC4t23384H Brassica oleracea HOM05D000219 ORTHO05D004649 1.1e-181 640.6 589 55.5
Carub.0004s1193 Capsella rubella HOM05D000219 ORTHO05D004649 5.4e-181 638.3 566 57.4
AUR62010269 Chenopodium quinoa HOM05D000219 ORTHO05D004649 7.1e-181 637.9 531 59.3
A03p17780 Brassica napus HOM05D000219 ORTHO05D004649 9.2e-181 637.5 571 57.1
FvH4_1g22971 Fragaria vesca HOM05D000219 ORTHO05D004649 1.2e-180 637.1 563 58.1
Oeu035604.1 Olea europaea HOM05D000219 ORTHO05D004649 2.7e-180 636.0 566 58.0
Rhsim10G0148200 Rhododendron simsii HOM05D000219 ORTHO05D004649 2.7e-180 636.0 571 58.8
AT2G32320 Arabidopsis thaliana HOM05D000219 ORTHO05D004649 3.5e-180 635.6 563 57.4
SalBow6G5746 Salvia bowleyana HOM05D000219 ORTHO05D004649 6.0e-180 634.8 568 56.0
A05p13880 Brassica napus HOM05D000219 ORTHO05D004649 1.0e-179 634.0 568 56.7
Sp4g14010 Schrenkiella parvula HOM05D000219 ORTHO05D004649 1.0e-179 634.0 562 57.7
C03p20860 Brassica napus HOM05D000219 ORTHO05D004649 1.7e-179 633.3 563 57.4
Haze_08455 Corylus avellana HOM05D000219 ORTHO05D004649 1.7e-179 633.3 314 97.8
MSTRG.2524 Avicennia marina HOM05D000219 ORTHO05D004649 6.6e-179 631.3 567 57.0
SGA_v2.0_scaffold2G01286 Striga asiatica HOM05D000219 ORTHO05D004649 1.5e-178 630.2 573 56.4
ECA234G1541 Erigeron canadensis HOM05D000219 ORTHO05D004649 3.3e-178 629.0 567 57.3
BraA03t11042Z Brassica rapa HOM05D000219 ORTHO05D004649 1.6e-177 626.7 590 55.1
BraA05t20324Z Brassica rapa HOM05D000219 ORTHO05D004649 2.8e-177 625.9 592 54.7
AUR62013249 Chenopodium quinoa HOM05D000219 ORTHO05D004649 2.8e-177 625.9 531 58.6
BolC3t14438H Brassica oleracea HOM05D000219 ORTHO05D004649 4.7e-177 625.2 596 54.9
MELO3C007464.2 Cucumis melo HOM05D000219 ORTHO05D004649 1.4e-176 623.6 564 57.4
HanXRQChr10g0311141 Helianthus annuus HOM05D000219 ORTHO05D004649 5.2e-176 621.7 567 56.1
Hma1.2p1_0975F.1_g243180 Hydrangea macrophylla HOM05D000219 ORTHO05D004649 6.8e-176 621.3 564 56.6
FAN23G1549 Fragaria x ananassa HOM05D000219 ORTHO05D004649 9.9e-175 617.5 518 61.4
Lj8A365T11 Lonicera japonica HOM05D000219 ORTHO05D004649 4.1e-173 612.1 563 56.3
FAN26G0146 Fragaria x ananassa HOM05D000219 ORTHO05D004649 7.1e-173 611.3 515 60.2
Aa31LG5G4650 Aethionema arabicum HOM05D000219 ORTHO05D004649 9.2e-173 610.9 512 60.2
Thecc.06G220500 Theobroma cacao HOM05D000219 ORTHO05D004649 2.7e-172 609.4 482 64.9
Sopen04g022970 Solanum pennellii HOM05D000219 ORTHO05D004649 4.6e-172 608.6 567 55.7
Hund21266 Selenicereus undatus HOM05D000219 ORTHO05D004649 5.1e-171 605.1 546 55.3
unitig_899.g14613 Utricularia gibba HOM05D000219 ORTHO05D004649 6.6e-171 604.7 558 54.3
CAN.G1235.19 Capsicum annuum HOM05D000219 ORTHO05D004649 2.8e-169 599.4 564 55.0
Gohir.D05G173400 Gossypium hirsutum HOM05D000219 ORTHO05D004649 6.2e-169 598.2 511 60.1
FAN27G2048 Fragaria x ananassa HOM05D000219 ORTHO05D004649 2.6e-167 592.8 567 55.4
Lalb_Chr11g0075091 Lupinus albus HOM05D000219 ORTHO05D004649 2.6e-167 592.8 565 54.2
Nn1g05995 Nelumbo nucifera HOM05D000219 ORTHO05D004649 3.4e-167 592.4 571 55.5
Peaxi162Scf00106g01118 Petunia axillaris HOM05D000219 ORTHO05D004649 6.4e-166 588.2 578 53.6
DCAR_027131 Daucus carota HOM05D000219 ORTHO05D004649 2.3e-163 579.7 567 53.6
Lj5g0005884 Lotus japonicus HOM05D000219 ORTHO05D004649 1.1e-162 577.4 564 53.2
arahy.Tifrunner.gnm1.ann1.V7J6Z4 Arachis hypogaea HOM05D000219 ORTHO05D004649 1.4e-160 570.5 546 53.8
Glyma.16G091600 Glycine max HOM05D000219 ORTHO05D004649 3.1e-160 569.3 564 53.0
arahy.Tifrunner.gnm1.ann1.M2QW19 Arachis hypogaea HOM05D000219 ORTHO05D004649 5.3e-160 568.5 546 53.8
VMungo0720G2488 Vigna mungo HOM05D000219 ORTHO05D004649 2.6e-159 566.2 565 53.5
Atru.chr10.1005 Acer truncatum HOM05D000219 ORTHO05D004649 4.5e-159 565.5 414 68.6
TPR.G6992 Trifolium pratense HOM05D000219 ORTHO05D004649 1.3e-158 563.9 565 52.4
Glyma.10G001600 Glycine max HOM05D000219 ORTHO05D004649 3.2e-157 559.3 565 52.6
Sc05g0007990 Simmondsia chinensis HOM05D000219 ORTHO05D004649 7.1e-157 558.1 563 52.8
Psat0s1144g0040 Pisum sativum HOM05D000219 ORTHO05D004649 2.1e-156 556.6 563 52.2
CARHR008820 Cardamine hirsuta HOM05D000219 ORTHO05D004649 1.3e-155 553.9 510 55.3
Ca_09426_v3 Cicer arietinum L. HOM05D000219 ORTHO05D004649 3.9e-155 552.4 566 51.9
Atru.chr10.1102 Acer truncatum HOM05D000219 ORTHO05D004649 1.5e-154 550.4 475 60.4
Psat7g054840 Pisum sativum HOM05D000219 ORTHO05D004649 1.9e-154 550.1 563 51.9
Phvul.010G125700 Phaseolus vulgaris HOM05D000219 ORTHO05D004649 2.5e-154 549.7 565 52.4
AT2G31580 Arabidopsis thaliana HOM05D000219 ORTHO05D004649 7.4e-154 548.1 450 60.4
Hma1.2p1_0252F.1_g102800 Hydrangea macrophylla HOM05D000219 ORTHO05D004649 2.1e-153 546.6 486 58.0
Medtr7g115250 Medicago truncatula HOM05D000219 ORTHO05D004649 2.1e-153 546.6 565 51.9
Solyc04g051600.4 Solanum lycopersicum HOM05D000219 ORTHO05D004649 3.7e-153 545.8 516 56.2
Lj6g0002222 Lotus japonicus HOM05D000219 ORTHO05D004649 1.4e-149 533.9 532 52.4
Nitab4.5_0000184g0150 Nicotiana tabacum HOM05D000219 ORTHO05D004649 8.2e-145 518.1 567 51.5
Nitab4.5_0009050g0040 Nicotiana tabacum HOM05D000219 ORTHO05D004649 7.6e-143 511.5 572 50.5
vmacro12890 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 1.1e-141 507.7 615 47.3
COL.COLO4_17688 Corchorus olitorius HOM05D000219 ORTHO05D004649 2.1e-140 503.4 432 60.6
PGSC0003DMG400031193 Solanum tuberosum HOM05D000219 ORTHO05D004649 6.9e-136 488.4 480 53.5
vmacro14893 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 1.7e-134 483.8 612 47.7
RcHm_v2.0_Chr2g0117491 Rosa chinensis HOM05D000219 ORTHO05D004649 1.8e-131 473.8 455 53.0
Lsat_1_v5_gn_7_9060 Lactuca sativa HOM05D000219 ORTHO05D004649 1.8e-128 463.8 569 46.7
CAN.G1044.3 Capsicum annuum HOM05D000219 ORTHO05D004649 2.9e-126 456.4 448 55.6
EL10Ac8g20632 Beta vulgaris HOM05D000219 ORTHO05D004649 4.7e-124 449.1 529 47.8
PGR102G3329 Punica granatum HOM05D000219 ORTHO05D004649 4.7e-124 449.1 453 52.1
Migut.B00934 Erythranthe guttata HOM05D000219 ORTHO05D004649 5.7e-122 442.2 344 63.4
Os05g0535500 Oryza sativa ssp. japonica HOM05D000219 ORTHO05D004649 3.1e-120 436.4 565 43.0
TAR628G0592 Trochodendron aralioides HOM05D000219 ORTHO05D004649 2.3e-115 420.2 310 67.4
Lj7C160G16 Lonicera japonica HOM05D000219 ORTHO05D004649 2.6e-111 406.8 356 58.1
Atru.chr10.1697 Acer truncatum HOM05D000219 ORTHO05D004649 1.6e-108 397.5 287 68.6
MBI04_g33333_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004649 1.2e-90 338.2 292 57.9
CANSAT01G1436 Cannabis sativa HOM05D000219 ORTHO05D004649 1.0e-86 325.1 263 58.9
RcHm_v2.0_Chr6g0279211 Rosa chinensis HOM05D000219 ORTHO05D004649 3.1e-83 313.5 261 61.3
Aqoxy2G01146 Aquilegia oxysepala HOM05D000219 ORTHO05D004649 3.4e-82 310.1 292 54.8
Aqoxy3G01228 Aquilegia oxysepala HOM05D000219 ORTHO05D004649 3.7e-81 306.6 292 54.1
PSO782G0604 Papaver somniferum HOM05D000219 ORTHO05D004649 3.5e-79 300.1 292 53.1
HPP92_021547 Vanilla planifolia HOM05D000219 ORTHO05D004649 1.7e-73 281.2 293 48.5
ATR0322G032 Amborella trichopoda HOM05D000219 ORTHO05D004649 2.2e-73 280.8 296 50.3
Glyma.16G117567 Glycine max HOM05D000219 ORTHO05D004649 6.4e-73 279.3 280 53.2
PSO063G1486 Papaver somniferum HOM05D000219 ORTHO05D004649 1.1e-72 278.5 331 45.9
CDE06G2407 Ceratophyllum demersum HOM05D000219 ORTHO05D004649 7.0e-72 275.8 266 52.3
Mapoly0167s0023 Marchantia polymorpha HOM05D000219 ORTHO05D004649 1.0e-70 271.9 290 48.3
MBI05_g03455_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004649 1.1e-69 268.5 180 70.0
PSO063G0175 Papaver somniferum HOM05D000219 ORTHO05D004649 1.9e-69 267.7 292 49.7
PSO541G5787 Papaver somniferum HOM05D000219 ORTHO05D004649 6.2e-68 262.7 248 53.6
Pp3c1_10760 Physcomitrium patens HOM05D000219 ORTHO05D004649 8.9e-67 258.8 290 45.2
AagrBONN_evm.TU.Sc2ySwM_117.2004 Anthoceros agrestis HOM05D000219 ORTHO05D004649 7.5e-66 255.8 278 47.5
CBR_g11164 Chara braunii HOM05D000219 ORTHO05D004649 4.3e-61 240.0 244 49.2
AUR62014746 Chenopodium quinoa HOM05D000219 ORTHO05D004649 1.4e-59 235.0 294 43.2
Zm00001eb294000 Zea mays HOM05D000219 ORTHO05D004649 2.4e-59 234.2 370 37.8
TAR628G0698 Trochodendron aralioides HOM05D000219 ORTHO05D004649 1.5e-58 231.5 224 56.7
Cre13.g581550 Chlamydomonas reinhardtii HOM05D000219 ORTHO05D004649 1.9e-56 224.6 290 41.7
Glyma.16G117633 Glycine max HOM05D000219 ORTHO05D004649 3.9e-54 216.9 179 60.9
HanXRQChr10g0318971 Helianthus annuus HOM05D000219 ORTHO05D004649 1.6e-52 211.5 182 58.8
Atru.chr10.1696 Acer truncatum HOM05D000219 ORTHO05D004649 6.9e-51 206.1 176 59.7
PRCOL_00002092 Prasinoderma coloniale HOM05D000219 ORTHO05D004649 9.0e-51 205.7 291 38.8
SMO146G0027 Selaginella moellendorffii HOM05D000219 ORTHO05D004649 5.8e-50 203.0 292 40.1
Sopen04g022950 Solanum pennellii HOM05D000219 ORTHO05D000001 4.9e-49 199.9 167 58.1
SHI31711 Sapria himalayana HOM05D000219 ORTHO05D004649 3.0e-46 190.7 133 63.9
HPP92_021534 Vanilla planifolia HOM05D000219 ORTHO05D004649 3.0e-46 190.7 172 53.5
Cfa023086 Carpinus fangiana HOM05D000219 ORTHO05D004649 2.1e-44 184.5 256 39.5
CARHR125230 Cardamine hirsuta HOM05D000219 ORTHO05D004649 9.0e-43 179.1 111 72.1
vmacro14894 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 9.0e-43 179.1 320 37.2
PGSC0003DMG402004545 Solanum tuberosum HOM05D000219 ORTHO05D004649 4.2e-40 170.2 143 55.9
Lj7A96G45 Lonicera japonica HOM05D000219 ORTHO05D004649 2.1e-39 167.9 98 83.7
HPP92_021538 Vanilla planifolia HOM05D000219 ORTHO05D004649 1.4e-35 155.2 244 38.9
RcHm_v2.0_Chr2g0117501 Rosa chinensis HOM05D000219 ORTHO05D004649 4.0e-35 153.7 93 79.6
SHI31709 Sapria himalayana HOM05D000219 ORTHO05D004649 1.3e-33 148.7 98 68.4
HanXRQChr10g0319001 Helianthus annuus HOM05D000219 ORTHO05D004649 4.9e-33 146.7 93 78.5
Cpa.g.c44268 Carica papaya HOM05D000219 ORTHO05D004649 1.6e-31 141.7 71 88.7
Haze_26924 Corylus avellana HOM05D000219 ORTHO05D004649 4.6e-31 140.2 205 40.0
AagrBONN_evm.TU.Sc2ySwM_344.3315 Anthoceros agrestis HOM05D000219 ORTHO05D004649 2.3e-30 137.9 130 53.1
vmacro13881 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 5.7e-29 133.3 103 61.2
HanXRQChr10g0318981 Helianthus annuus HOM05D000219 ORTHO05D004649 1.8e-27 128.3 91 62.6
GSVIVG01006301001 Vitis vinifera HOM05D000026 ORTHO05D000127 6.9e-27 126.3 88 68.2
CAN.G555.5 Capsicum annuum HOM05D000219 ORTHO05D000137 4.5e-26 123.6 87 66.7
CARHR125240 Cardamine hirsuta HOM05D000219 ORTHO05D004649 1.2e-23 115.5 107 58.9
Nitab4.5_0005102g0050 Nicotiana tabacum HOM05D000219 ORTHO05D004649 3.0e-22 110.9 80 65.0
PGSC0003DMG400016550 Solanum tuberosum HOM05D000219 ORTHO05D004649 5.1e-22 110.2 86 61.6
vmacro20266 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 1.1e-21 109.0 188 35.6
Lj7A96T47 Lonicera japonica HOM05D000219 ORTHO05D004649 4.3e-21 107.1 59 79.7
Atru.chr10.1103 Acer truncatum HOM05D000219 ORTHO05D004649 2.2e-20 104.8 61 77.0
PGSC0003DMG401004545 Solanum tuberosum HOM05D000219 ORTHO05D004649 1.4e-16 92.0 58 75.9
Atru.chr10.1695 Acer truncatum HOM05D000219 ORTHO05D021059 7.2e-16 89.7 88 52.3
HanXRQChr10g0318991 Helianthus annuus HOM05D000219 ORTHO05D021059 2.1e-15 88.2 69 60.9
Actinidia05378 Actinidia chinensis HOM05D000219 ORTHO05D004649 5.7e-13 80.1 56 62.5
PGSC0003DMG400020961 Solanum tuberosum HOM05D000219 ORTHO05D004649 7.4e-13 79.7 50 72.0
AL4G27720 Arabidopsis lyrata HOM05D000219 ORTHO05D021059 4.8e-12 77.0 100 40.0
Gohir.A03G040550 Gossypium hirsutum HOM05D000219 ORTHO05D021059 1.5e-10 72.0 45 77.8
PGSC0003DMG400020960 Solanum tuberosum HOM05D000219 ORTHO05D004649 2.0e-10 71.6 44 70.5
A07p24800 Brassica napus HOM05D000219 ORTHO05D017689 7.7e-10 69.7 73 49.3
C03p38700 Brassica napus HOM05D012973 ORTHO05D016770 7.7e-10 69.7 67 52.2
BraA03t15335Z Brassica rapa HOM05D000219 ORTHO05D017689 7.7e-10 69.7 73 49.3
BcaC05g27999 Brassica carinata HOM05D012973 ORTHO05D016770 1.0e-09 69.3 67 50.7
A02p19800 Brassica napus HOM05D000219 ORTHO05D017689 1.0e-09 69.3 73 49.3
C05p40080 Brassica napus HOM05D012973 ORTHO05D016770 1.0e-09 69.3 67 50.7
BolC5t32753H Brassica oleracea HOM05D012973 ORTHO05D016770 1.0e-09 69.3 67 50.7
Lj8A365T12 Lonicera japonica HOM05D000219 ORTHO05D004649 1.0e-09 69.3 36 88.9
SHI31712 Sapria himalayana HOM05D000219 ORTHO05D366583 2.9e-09 67.8 46 65.2
COL.COLO4_25028 Corchorus olitorius HOM05D000219 ORTHO05D004649 3.8e-09 67.4 43 74.4
BolC3t16144H Brassica oleracea HOM05D012973 ORTHO05D016770 5.0e-09 67.0 60 55.0
C09p21500 Brassica napus HOM05D000352 ORTHO05D000260 8.5e-09 66.2 46 67.4
C09p23930 Brassica napus HOM05D000219 ORTHO05D017689 1.1e-08 65.9 73 47.9


User provided reference genes

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