Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 1.0e-285 986.1 516 100.0
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 1.6e-254 882.5 518 90.9
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 2.3e-213 745.7 518 78.6
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 3.3e-199 698.7 518 74.3
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 4.3e-191 671.8 678 60.5
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 1.3e-163 580.5 518 61.0
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 8.7e-160 567.8 520 60.6
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 1.9e-159 566.6 520 61.7
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 2.8e-158 562.8 533 59.3
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 3.6e-158 562.4 518 59.5
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 6.2e-158 561.6 544 59.6
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 1.1e-157 560.8 517 60.3
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 2.4e-157 559.7 517 60.2
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 1.6e-153 547.0 520 58.7
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 5.1e-152 542.0 519 58.0
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 6.7e-152 541.6 518 58.9
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 1.9e-151 540.0 518 59.1
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 2.5e-151 539.7 518 58.7
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 5.8e-148 528.5 519 58.4
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 1.7e-147 526.9 522 55.9
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 1.3e-144 517.3 520 55.4
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 3.1e-141 506.1 516 56.0
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 1.9e-138 496.9 522 55.6
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 3.2e-138 496.1 516 54.1
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 3.5e-137 492.7 529 53.9
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 4.6e-137 492.3 518 54.2
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 1.3e-136 490.7 516 54.7
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 2.3e-136 490.0 517 54.7
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.5e-135 487.3 558 49.8
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 4.3e-135 485.7 520 54.2
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 3.7e-134 482.6 538 53.0
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 3.1e-133 479.6 517 53.4
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 6.9e-133 478.4 522 53.6
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 1.2e-132 477.6 545 51.4
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 2.0e-132 476.9 519 53.4
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 4.5e-132 475.7 475 57.7
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 1.3e-131 474.2 519 53.0
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 1.7e-131 473.8 518 51.2
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 6.5e-131 471.9 530 50.2
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 2.7e-129 466.5 518 50.0
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 6.1e-129 465.3 518 51.7
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 5.1e-128 462.2 518 51.2
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 2.5e-127 459.9 520 52.1
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 5.7e-127 458.8 517 50.9
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 2.4e-125 453.4 519 51.6
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 4.1e-125 452.6 519 50.5
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 9.1e-125 451.4 535 49.3
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 1.5e-124 450.7 519 50.3
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 7.7e-124 448.4 519 50.1
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 2.2e-123 446.8 519 48.6
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 5.0e-123 445.7 514 51.0
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 8.5e-123 444.9 526 50.2
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 8.5e-123 444.9 527 49.1
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 1.1e-122 444.5 526 49.8
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 2.5e-122 443.4 518 50.4
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 1.6e-121 440.7 521 48.9
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 2.1e-121 440.3 545 49.9
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 7.9e-121 438.3 530 49.1
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.4e-120 437.6 530 49.1
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.3e-120 436.8 532 48.5
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.3e-120 436.8 533 49.2
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 1.7e-118 430.6 521 49.1
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 2.8e-118 429.9 520 48.5
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 1.1e-117 427.9 521 49.9
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 1.4e-117 427.6 519 47.6
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 3.1e-117 426.4 547 47.5
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 3.1e-117 426.4 513 48.0
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 5.3e-117 425.6 473 52.2
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 7.0e-117 425.2 524 48.5
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 7.0e-117 425.2 522 49.0
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 2.0e-116 423.7 523 49.3
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 7.7e-116 421.8 519 48.4
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 1.2e-113 414.5 516 49.4
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 2.3e-112 410.2 518 47.1
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 2.8e-110 403.3 522 46.2
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 1.1e-109 401.4 518 46.7
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 7.0e-109 398.7 523 46.7
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 7.0e-109 398.7 520 45.8
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 7.7e-108 395.2 520 45.4
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 2.9e-107 393.3 518 43.1
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 2.9e-107 393.3 518 45.6
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 1.9e-106 390.6 523 45.3
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 7.2e-106 388.7 518 44.6
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 1.0e-104 384.8 524 44.7
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 1.0e-104 384.8 524 44.7
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 1.0e-104 384.8 517 44.7
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 2.3e-104 383.6 524 44.5
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 2.3e-104 383.6 528 43.9
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 3.0e-104 383.3 276 76.4
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 1.5e-103 380.9 524 44.5
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 1.5e-103 380.9 525 44.4
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 5.7e-103 379.0 524 44.1
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 5.7e-103 379.0 523 44.0
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 6.3e-102 375.6 535 45.0
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 1.8e-101 374.0 522 44.6
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 2.4e-101 373.6 523 44.4
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 1.2e-100 371.3 544 43.2
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 2.7e-100 370.2 496 45.6
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 1.0e-99 368.2 524 43.5
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 2.9e-99 366.7 524 43.1
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 7.5e-95 352.1 528 42.4
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 1.3e-94 351.3 519 42.2
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 1.7e-94 350.9 516 42.6
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 1.2e-92 344.7 339 53.7
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 3.5e-92 343.2 379 52.2
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 3.3e-90 336.7 519 40.5
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 7.2e-90 335.5 339 54.3
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 1.6e-89 334.3 519 41.8
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 4.7e-89 332.8 527 40.8
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.0e-88 331.6 498 43.2
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 8.3e-86 322.0 518 40.3
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 5.8e-79 299.3 287 55.7
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 2.9e-78 297.0 533 36.6
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 7.0e-77 292.4 535 35.9
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 2.0e-76 290.8 278 59.4
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 2.7e-76 290.4 354 48.6
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 7.8e-76 288.9 516 37.4
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 1.9e-74 284.3 516 37.8
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 3.6e-73 280.0 532 35.9
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 1.5e-71 274.6 294 53.1
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.3e-70 271.6 350 46.0
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 2.4e-69 267.3 262 59.9
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 2.4e-69 267.3 531 36.9
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 1.4e-61 241.5 262 50.0
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 3.8e-54 216.9 477 34.8
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 2.4e-53 214.2 527 33.6
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 5.4e-53 213.0 341 40.5
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 1.6e-52 211.5 168 64.3
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 8.4e-46 189.1 305 40.3
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 4.2e-37 160.2 326 37.4
CSS0016908 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 4.6e-36 156.8 202 47.5
Glyma.20G157700 Glycine max HOM05D004671 ORTHO05D005638 9.6e-34 149.1 161 50.3
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 1.3e-30 138.7 211 39.8
Glyma.12G162990 Glycine max HOM05D004671 ORTHO05D005638 4.6e-28 130.2 180 44.4
CDE04G1371 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 1.0e-27 129.0 201 39.8
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 6.2e-25 119.8 277 33.2
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 5.3e-24 116.7 109 51.4
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 6.9e-24 116.3 109 50.5
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 1.0e-22 112.5 189 35.4
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 1.1e-21 109.0 104 50.0
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 4.2e-21 107.1 518 24.1
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 1.0e-19 102.4 633 22.9
Zm00001eb440850 Zea mays HOM05D004671 ORTHO05D005638 1.8e-19 101.7 216 35.6
CBR_g5700 Chara braunii HOM05D004671 ORTHO05D005638 5.1e-19 100.1 220 32.3
Peaxi162Scf00848g00015 Petunia axillaris HOM05D004671 ORTHO05D005638 7.7e-15 86.3 163 33.1
AL5G14400 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 2.1e-12 78.2 265 28.7


User provided reference genes

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