Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 0.0e+00 1412.1 791 100.0
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 1.1e-198 697.6 717 62.1
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 1.4e-169 600.9 516 69.4
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 6.2e-157 558.9 674 50.9
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 1.3e-154 551.2 671 54.4
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 1.5e-150 537.7 680 49.6
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 5.4e-145 519.2 672 49.7
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 4.6e-144 516.2 678 50.7
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 1.3e-143 514.6 678 50.3
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 5.1e-143 512.7 640 51.4
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 6.6e-143 512.3 675 51.4
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 6.6e-143 512.3 696 47.7
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 3.3e-142 510.0 674 50.3
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 4.3e-142 509.6 672 48.5
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 9.6e-142 508.4 674 52.1
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 6.2e-141 505.8 681 51.0
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 5.3e-140 502.7 664 49.2
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 3.4e-139 500.0 678 47.9
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 4.4e-139 499.6 649 50.2
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 7.6e-139 498.8 675 51.4
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 7.6e-139 498.8 703 47.8
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 1.3e-138 498.0 702 49.7
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 6.4e-138 495.7 671 49.8
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 1.9e-137 494.2 672 47.2
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 3.2e-137 493.4 675 47.4
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 9.3e-137 491.9 674 50.6
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.3e-135 488.0 677 48.0
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.7e-135 487.6 679 47.7
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 8.7e-135 485.3 677 47.7
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 1.9e-134 484.2 718 45.5
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 7.3e-134 482.3 680 46.0
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 2.8e-133 480.3 676 49.6
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 8.1e-133 478.8 673 48.4
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 3.1e-132 476.9 678 45.9
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 3.1e-132 476.9 686 49.9
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 4.0e-132 476.5 718 45.1
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 6.9e-132 475.7 677 49.9
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 4.5e-131 473.0 744 46.8
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 7.6e-131 472.2 668 48.8
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 2.9e-130 470.3 674 49.0
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 8.4e-130 468.8 739 44.7
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 2.4e-129 467.2 649 47.5
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 1.2e-128 464.9 683 46.0
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 7.9e-128 462.2 719 43.1
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 1.5e-126 458.0 676 46.7
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 5.6e-126 456.1 744 46.5
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 1.3e-125 454.9 678 45.4
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 2.1e-125 454.1 652 46.0
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 3.1e-124 450.3 696 46.8
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 1.9e-121 441.0 647 47.9
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 1.6e-120 438.0 683 45.1
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 1.1e-118 431.8 677 45.6
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 5.7e-118 429.5 647 45.4
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 4.8e-117 426.4 675 44.4
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 2.4e-116 424.1 686 44.2
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 5.3e-116 422.9 691 43.1
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 5.3e-116 422.9 659 43.7
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 6.9e-116 422.5 706 42.2
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.2e-115 421.8 623 45.7
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 7.6e-115 419.1 690 42.9
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 2.2e-114 417.5 674 42.1
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 2.5e-113 414.1 691 41.7
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 5.5e-113 412.9 666 45.0
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 5.5e-113 412.9 685 42.6
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 7.1e-113 412.5 679 43.0
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 7.1e-113 412.5 685 43.9
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.6e-112 411.4 683 44.1
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 2.1e-112 411.0 654 43.9
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 3.5e-112 410.2 665 42.3
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 1.0e-111 408.7 669 42.5
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 1.3e-111 408.3 709 40.8
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 3.0e-111 407.1 684 43.7
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 3.9e-111 406.8 713 41.4
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 3.3e-110 403.7 690 42.5
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 7.4e-110 402.5 793 38.2
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 3.7e-109 400.2 673 42.9
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 1.4e-108 398.3 681 41.7
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 9.0e-108 395.6 718 40.8
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 1.2e-107 395.2 678 41.9
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 1.2e-107 395.2 673 41.9
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 1.5e-107 394.8 691 44.6
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 5.9e-107 392.9 688 42.3
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 1.3e-106 391.7 365 64.4
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 1.7e-106 391.3 631 44.2
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 5.0e-106 389.8 683 42.0
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 6.5e-106 389.4 703 42.1
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 3.2e-105 387.1 677 41.4
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 8.8e-103 379.0 437 52.9
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 6.3e-101 372.9 693 41.4
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 2.4e-100 370.9 691 40.5
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 1.1e-97 362.1 418 54.5
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 3.2e-97 360.5 370 60.0
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 3.5e-91 340.5 649 40.5
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 1.1e-89 335.5 655 39.1
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 1.4e-87 328.6 533 44.3
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 2.3e-87 327.8 647 39.7
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 1.2e-78 298.9 532 42.7
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 2.6e-78 297.7 648 36.3
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 4.8e-77 293.5 556 38.5
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 1.2e-72 278.9 439 43.5
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 8.0e-72 276.2 703 34.3
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 1.0e-71 275.8 395 45.8
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 1.2e-64 252.3 688 32.1
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 6.4e-61 240.0 450 38.9
MBI05_g36740_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 4.1e-60 237.3 200 63.5
Nitab4.5_0000518g0040 Nicotiana tabacum HOM05D004921 ORTHO05D006008 2.9e-58 231.1 469 39.4
Hma1.2p1_0070F.1_g037670 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 9.2e-52 209.5 467 37.9
CSS0005403 Camellia sinensis var. sinensis HOM05D004921 ORTHO05D006008 2.5e-49 201.4 391 37.6
BcaNung05547 Brassica carinata HOM05D004921 ORTHO05D006008 8.9e-47 193.0 205 56.6
Dinv16320 Davidia involucrata HOM05D004921 ORTHO05D006008 2.2e-45 188.3 133 72.2
Nitab4.5_0000518g0050 Nicotiana tabacum HOM05D004921 ORTHO05D006008 1.3e-42 179.1 115 76.5
Cc07_g15670 Coffea canephora HOM05D004921 ORTHO05D006008 4.3e-41 174.1 114 72.8
CAN.G727.1 Capsicum annuum HOM05D004921 ORTHO05D006008 6.8e-39 166.8 113 72.6
Cpa.g.sc82.58 Carica papaya HOM05D004921 ORTHO05D006008 2.6e-38 164.9 113 75.2
Pp3c3_27510 Physcomitrium patens HOM05D004921 ORTHO05D006008 3.3e-33 147.9 343 34.1
A01p00580 Brassica napus HOM05D004921 ORTHO05D006008 9.6e-33 146.4 267 38.6
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 2.8e-32 144.8 575 28.2
AagrBONN_evm.TU.Sc2ySwM_344.1023 Anthoceros agrestis HOM05D004921 ORTHO05D006008 1.4e-31 142.5 506 27.1
Mapoly0001s0396 Marchantia polymorpha HOM05D004921 ORTHO05D006008 1.4e-31 142.5 551 30.3
Zm00001eb069160 Zea mays HOM05D004921 ORTHO05D006008 4.0e-31 141.0 480 30.2
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 8.9e-31 139.8 561 27.1
Nn5g31279 Nelumbo nucifera HOM05D004921 ORTHO05D006008 1.9e-28 132.1 93 75.3
BraA01t00066Z Brassica rapa HOM05D004921 ORTHO05D006008 2.4e-28 131.7 196 44.4
BolC1t00074H Brassica oleracea HOM05D004921 ORTHO05D006008 3.2e-28 131.3 113 62.8
C01p00710 Brassica napus HOM05D004921 ORTHO05D006008 7.8e-27 126.7 114 62.3
BcaNung00891 Brassica carinata HOM05D004921 ORTHO05D006008 1.0e-26 126.3 100 68.0
SEGI_21175 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 1.1e-25 122.9 111 54.1
CBR_g51480 Chara braunii HOM05D004921 ORTHO05D006008 1.2e-22 112.8 513 25.0
SMO197G0017 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 2.0e-22 112.1 193 39.9
Cpa.g.sc82.54 Carica papaya HOM05D004921 ORTHO05D006008 4.9e-21 107.5 84 67.9
Dinv04895 Davidia involucrata HOM05D004921 ORTHO05D006008 4.6e-19 100.9 159 43.4
Dinv40591 Davidia involucrata HOM05D004921 ORTHO05D006008 1.3e-18 99.4 159 44.7
Dinv32118 Davidia involucrata HOM05D004921 ORTHO05D006008 3.9e-18 97.8 159 44.7
Os04g0636600 Oryza sativa ssp. japonica HOM05D004921 ORTHO05D006008 4.3e-17 94.4 391 27.1
Cpa.g.sc82.56 Carica papaya HOM05D004921 ORTHO05D006008 2.4e-15 88.6 60 73.3
Dinv21951 Davidia involucrata HOM05D004921 ORTHO05D006008 5.8e-14 84.0 110 41.8
Dinv21952 Davidia involucrata HOM05D004921 ORTHO05D006008 5.8e-14 84.0 101 48.5
MCO12G391 Micromonas commoda HOM05D004921 ORTHO05D006008 9.9e-14 83.2 358 24.9
COL.COLO4_35617 Corchorus olitorius HOM05D004921 ORTHO05D006008 5.6e-09 67.4 48 72.9
MBI14_g34262_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D006008 1.5e-06 59.3 53 60.4
Actinidia16048 Actinidia chinensis HOM05D004921 ORTHO05D006008 2.6e-06 58.5 53 50.9
MBI14_g14180_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D006008 2.6e-06 58.5 51 58.8


User provided reference genes

Program Settings