Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24918 Corylus avellana HOM05D009730 ORTHO05D000126 1.5e-303 1045.4 540 100.0
Haze_22106 Corylus avellana HOM05D009730 ORTHO05D000126 2.4e-229 798.9 500 84.6
Haze_11520 Corylus avellana HOM05D009730 ORTHO05D000126 1.9e-221 772.7 653 66.9
Haze_11514 Corylus avellana HOM05D009730 ORTHO05D000126 3.2e-221 771.9 652 67.0
Haze_21947 Corylus avellana HOM05D009730 ORTHO05D000126 3.8e-97 359.8 443 51.5
Haze_13236 Corylus avellana HOM05D009730 ORTHO05D000126 1.5e-66 258.1 453 43.0
Haze_09246 Corylus avellana HOM05D009730 ORTHO05D022268 3.0e-62 243.8 523 37.9
Haze_13239 Corylus avellana HOM05D009730 ORTHO05D000126 1.3e-57 228.4 418 40.0
Haze_18338 Corylus avellana HOM05D009730 ORTHO05D000126 4.2e-48 196.8 108 96.3
Cfa010234 Carpinus fangiana HOM05D009730 ORTHO05D022268 4.7e-47 193.4 145 66.9
Haze_13750 Corylus avellana HOM05D009730 ORTHO05D000126 1.4e-40 171.8 431 34.3
Cfa015359 Carpinus fangiana HOM05D009730 ORTHO05D000126 2.3e-38 164.5 462 34.0
Haze_18281 Corylus avellana HOM05D009730 ORTHO05D000126 8.0e-31 139.4 387 31.3
Haze_25395 Corylus avellana HOM05D009730 ORTHO05D022268 3.4e-29 134.0 183 45.9
Haze_18041 Corylus avellana HOM05D009730 ORTHO05D022268 3.5e-18 97.4 103 53.4
Cfa021592 Carpinus fangiana HOM05D009730 ORTHO05D022268 3.8e-17 94.0 150 40.0
Glyma.05G178000 Glycine max HOM05D005870 ORTHO05D007216 5.0e-17 93.6 175 40.6
Solyc06g072470.4 Solanum lycopersicum HOM05D005870 ORTHO05D007216 1.1e-16 92.4 169 41.4
Sopen06g028840 Solanum pennellii HOM05D005870 ORTHO05D007216 1.1e-16 92.4 169 41.4
Glyma.08G135000 Glycine max HOM05D005870 ORTHO05D007216 1.9e-16 91.7 175 40.6
CAN.G65.97 Capsicum annuum HOM05D005870 ORTHO05D007216 2.5e-16 91.3 152 42.8
Oeu002170.1 Olea europaea HOM05D005870 ORTHO05D007216 2.5e-16 91.3 53 86.8
Phvul.002G256700 Phaseolus vulgaris HOM05D005870 ORTHO05D007216 2.5e-16 91.3 62 82.3
VMungo0251G1964 Vigna mungo HOM05D005870 ORTHO05D007216 2.5e-16 91.3 62 82.3
Cfa019104 Carpinus fangiana HOM05D009730 ORTHO05D000126 3.3e-16 90.9 223 37.2
Cc07_g15090 Coffea canephora HOM05D005870 ORTHO05D007216 3.3e-16 90.9 62 80.6
PGSC0003DMG400026946 Solanum tuberosum HOM05D005870 ORTHO05D007216 3.3e-16 90.9 144 45.1
Nitab4.5_0000430g0130 Nicotiana tabacum HOM05D005870 ORTHO05D007216 5.5e-16 90.1 57 80.7
Nitab4.5_0006110g0010 Nicotiana tabacum HOM05D005870 ORTHO05D007216 5.5e-16 90.1 57 80.7
CANSAT01G0848 Cannabis sativa HOM05D005870 ORTHO05D007216 7.2e-16 89.7 57 82.5
CiPaw.04G100500 Carya illinoinensis HOM05D005870 ORTHO05D007216 7.2e-16 89.7 147 45.6
Nitab4.5_0000033g0220 Nicotiana tabacum HOM05D005870 ORTHO05D007216 7.2e-16 89.7 57 78.9
Solyc03g097950.4 Solanum lycopersicum HOM05D005870 ORTHO05D007216 7.2e-16 89.7 57 80.7
Sopen03g028660 Solanum pennellii HOM05D005870 ORTHO05D007216 7.2e-16 89.7 174 40.2
PGSC0003DMG400033691 Solanum tuberosum HOM05D005870 ORTHO05D007216 7.2e-16 89.7 57 80.7
Atru.chr4.42 Acer truncatum HOM05D005870 ORTHO05D007216 9.5e-16 89.4 62 80.6
Sed0015800 Sechium edule HOM05D005870 ORTHO05D007216 9.5e-16 89.4 62 80.6
Nitab4.5_0004855g0010 Nicotiana tabacum HOM05D005870 ORTHO05D007216 1.2e-15 89.0 57 78.9
MBI05_g37050_MAGBIO Magnolia biondii HOM05D005870 ORTHO05D007216 1.6e-15 88.6 62 75.8
Medtr8g090185 Medicago truncatula HOM05D005870 ORTHO05D007216 1.6e-15 88.6 176 39.2
Sabra07G0077600 Salix brachista HOM05D005870 ORTHO05D007216 2.1e-15 88.2 63 77.8
Ciclev10026623m.g Citrus clementina HOM05D005870 ORTHO05D007216 2.8e-15 87.8 62 80.6
AL8G42760 Arabidopsis lyrata HOM05D005870 ORTHO05D007216 3.6e-15 87.4 62 77.4
AT5G65220 Arabidopsis thaliana HOM05D005870 ORTHO05D007216 3.6e-15 87.4 62 77.4
Carub.0008s2608 Capsella rubella HOM05D005870 ORTHO05D007216 3.6e-15 87.4 62 77.4
Cfa017139 Carpinus fangiana HOM05D009730 ORTHO05D000126 4.7e-15 87.0 175 40.6
Haze_08587 Corylus avellana HOM05D009730 ORTHO05D000006 4.7e-15 87.0 214 35.0
Manes.13G093516 Manihot esculenta HOM05D005870 ORTHO05D007216 4.7e-15 87.0 62 79.0
SalBow3G2704 Salvia bowleyana HOM05D005870 ORTHO05D007216 4.7e-15 87.0 57 78.9
Duzib147G1590 Durio zibethinus HOM05D005870 ORTHO05D007216 6.1e-15 86.7 62 79.0
Nn5g30105 Nelumbo nucifera HOM05D005870 ORTHO05D007216 6.1e-15 86.7 62 75.8
GSVIVG01004857001 Vitis vinifera HOM05D005870 ORTHO05D007216 6.1e-15 86.7 60 78.3
GSVIVG01013304001 Vitis vinifera HOM05D005870 ORTHO05D007216 6.1e-15 86.7 60 78.3
Lj4g0027302 Lotus japonicus HOM05D005870 ORTHO05D007216 8.0e-15 86.3 62 77.4
MSTRG.3774 Avicennia marina HOM05D005870 ORTHO05D007216 1.0e-14 85.9 57 77.2
Nn1g05359 Nelumbo nucifera HOM05D005870 ORTHO05D007216 1.0e-14 85.9 62 75.8
MD00G1199600 Malus domestica HOM05D005870 ORTHO05D007216 1.4e-14 85.5 57 77.2
QL06p049269 Quercus lobata HOM05D005870 ORTHO05D007216 1.4e-14 85.5 61 78.7
CARHR279150 Cardamine hirsuta HOM05D005870 ORTHO05D007216 1.8e-14 85.1 62 77.4
Cpa.g.sc615.2 Carica papaya HOM05D005870 ORTHO05D007216 1.8e-14 85.1 62 75.8
Migut.H02353 Erythranthe guttata HOM05D005870 ORTHO05D007216 1.8e-14 85.1 53 79.2
Thecc.01G100700 Theobroma cacao HOM05D005870 ORTHO05D007216 1.8e-14 85.1 61 78.7
Ca_17742_v3 Cicer arietinum L. HOM05D005870 ORTHO05D007216 2.3e-14 84.7 62 79.0
Dinv13195 Davidia involucrata HOM05D005870 ORTHO05D007216 2.3e-14 84.7 57 75.4
Peaxi162Scf00171g00927 Petunia axillaris HOM05D005870 ORTHO05D007216 2.3e-14 84.7 57 77.2
TAR381G0757 Trochodendron aralioides HOM05D005870 ORTHO05D007216 2.3e-14 84.7 62 75.8
Actinidia20008 Actinidia chinensis HOM05D005870 ORTHO05D007216 3.0e-14 84.3 53 79.2
Hma1.2p1_0308F.1_g120250 Hydrangea macrophylla HOM05D005870 ORTHO05D007216 3.0e-14 84.3 57 75.4
PGR004G1211 Punica granatum HOM05D005870 ORTHO05D007216 3.0e-14 84.3 62 77.4
Gohir.A11G202300 Gossypium hirsutum HOM05D005870 ORTHO05D007216 4.0e-14 84.0 61 78.7
Gohir.D11G220900 Gossypium hirsutum HOM05D005870 ORTHO05D007216 4.0e-14 84.0 61 78.7
Gorai.007G237100 Gossypium raimondii HOM05D005870 ORTHO05D007216 4.0e-14 84.0 61 78.7
Rhsim10G0163500 Rhododendron simsii HOM05D005870 ORTHO05D007216 4.0e-14 84.0 62 74.2
Lalb_Chr07g0185191 Lupinus albus HOM05D005870 ORTHO05D007216 5.2e-14 83.6 62 79.0
MBI02_g35763_MAGBIO Magnolia biondii HOM05D005870 ORTHO05D007216 8.9e-14 82.8 62 74.2
ECA232G4208 Erigeron canadensis HOM05D005870 ORTHO05D007216 1.2e-13 82.4 57 70.2
Lalb_Chr12g0203881 Lupinus albus HOM05D005870 ORTHO05D007216 1.2e-13 82.4 62 77.4
unitig_747.g21825 Utricularia gibba HOM05D000660 ORTHO05D000766 1.2e-13 82.4 53 73.6
Potri.007G093700 Populus trichocarpa HOM05D005870 ORTHO05D007216 1.5e-13 82.0 62 74.2
Haze_18949 Corylus avellana HOM05D009730 ORTHO05D022268 2.0e-13 81.6 375 29.6
PSO210G6840 Papaver somniferum HOM05D005870 ORTHO05D007216 2.6e-13 81.3 62 71.0
PSO447G0167 Papaver somniferum HOM05D005870 ORTHO05D007216 2.6e-13 81.3 62 71.0
AUR62003803 Chenopodium quinoa HOM05D005870 ORTHO05D007216 4.4e-13 80.5 60 70.0
COL.COLO4_27254 Corchorus olitorius HOM05D005870 ORTHO05D007216 5.7e-13 80.1 61 77.0
vmacro07307 Vaccinium macrocarpon HOM05D005870 ORTHO05D007216 5.7e-13 80.1 62 72.6
Duzib187G0334 Durio zibethinus HOM05D005870 ORTHO05D007216 7.5e-13 79.7 61 75.4
Prupe.6G188000 Prunus persica HOM05D005870 ORTHO05D007216 7.5e-13 79.7 57 71.9
Cfa002008 Carpinus fangiana HOM05D009730 ORTHO05D000126 1.3e-12 79.0 88 50.0
AUR62001999 Chenopodium quinoa HOM05D005870 ORTHO05D007216 1.3e-12 79.0 60 68.3
DCAR_014215 Daucus carota HOM05D005870 ORTHO05D007216 1.3e-12 79.0 53 75.5
CDE10G0106 Ceratophyllum demersum HOM05D005870 ORTHO05D007216 1.7e-12 78.6 62 69.4
CDE10G0428 Ceratophyllum demersum HOM05D005870 ORTHO05D007216 1.7e-12 78.6 53 71.7
Eucgr.I00441 Eucalyptus grandis HOM05D005870 ORTHO05D007216 1.7e-12 78.6 62 72.6
Lsat_1_v5_gn_4_141420 Lactuca sativa HOM05D005870 ORTHO05D007216 1.7e-12 78.6 166 36.7
HanXRQChr15g0484171 Helianthus annuus HOM05D005870 ORTHO05D007216 4.9e-12 77.0 57 66.7
EL10Ac6g15115 Beta vulgaris HOM05D005870 ORTHO05D007216 8.3e-12 76.3 56 66.1
SGA_v2.0_scaffold54G19505 Striga asiatica HOM05D005870 ORTHO05D007216 8.3e-12 76.3 55 70.9
TPR.G6297 Trifolium pratense HOM05D005870 ORTHO05D007216 8.3e-12 76.3 56 69.6
Os02g0754300 Oryza sativa ssp. japonica HOM05D005870 ORTHO05D007216 1.1e-11 75.9 74 55.4
ClCG10G008830 Citrullus lanatus HOM05D005870 ORTHO05D007216 1.8e-11 75.1 62 71.0
Zm00001eb194130 Zea mays HOM05D005870 ORTHO05D007216 4.1e-11 73.9 47 76.6
FvH4_1g20710 Fragaria vesca HOM05D005870 ORTHO05D007216 7.0e-11 73.2 62 66.1
FAN19G2750 Fragaria x ananassa HOM05D005870 ORTHO05D007216 7.0e-11 73.2 62 66.1
FAN23G0590 Fragaria x ananassa HOM05D005870 ORTHO05D007216 7.0e-11 73.2 62 66.1
FAN26G0235 Fragaria x ananassa HOM05D005870 ORTHO05D007216 7.0e-11 73.2 62 66.1
FAN28G1626 Fragaria x ananassa HOM05D005870 ORTHO05D007216 7.0e-11 73.2 62 66.1
RcHm_v2.0_Chr2g0113161 Rosa chinensis HOM05D005870 ORTHO05D007216 7.0e-11 73.2 62 66.1
Zm00001eb249540 Zea mays HOM05D005870 ORTHO05D007216 2.7e-10 71.2 47 74.5
Zm00001eb335180 Zea mays HOM05D005870 ORTHO05D007216 2.7e-10 71.2 47 74.5
Thhalv10005022m.g Eutrema salsugineum HOM05D005870 ORTHO05D007216 3.5e-10 70.9 62 67.7
Aqoxy6G00780 Aquilegia oxysepala HOM05D005870 ORTHO05D007216 4.5e-10 70.5 62 66.1
Sc03g0002050 Simmondsia chinensis HOM05D005870 ORTHO05D007216 4.5e-10 70.5 137 40.9
Zm00001eb255290 Zea mays HOM05D005870 ORTHO05D007216 4.5e-10 70.5 74 51.4
MBI18_g38162_MAGBIO Magnolia biondii HOM05D005870 ORTHO05D007216 5.9e-10 70.1 55 65.5
Sp2g28320 Schrenkiella parvula HOM05D005870 ORTHO05D007216 5.9e-10 70.1 62 67.7
Hund16294 Selenicereus undatus HOM05D005870 ORTHO05D007216 1.7e-09 68.6 54 64.8
BolC2t12461H Brassica oleracea HOM05D005870 ORTHO05D007216 2.3e-09 68.2 56 71.4
BcaB02g09886 Brassica carinata HOM05D005870 ORTHO05D007216 5.0e-09 67.0 62 64.5
BcaB07g34228 Brassica carinata HOM05D005870 ORTHO05D007216 5.0e-09 67.0 62 64.5
BcaC01g02758 Brassica carinata HOM05D005870 ORTHO05D007216 5.0e-09 67.0 62 64.5
A06p32070 Brassica napus HOM05D005870 ORTHO05D007216 5.0e-09 67.0 62 64.5
C03p60860 Brassica napus HOM05D005870 ORTHO05D007216 5.0e-09 67.0 62 64.5
BolC3t18343H Brassica oleracea HOM05D005870 ORTHO05D007216 5.0e-09 67.0 62 64.5
BraA06t26136Z Brassica rapa HOM05D005870 ORTHO05D007216 5.0e-09 67.0 62 64.5
Haze_14842 Corylus avellana HOM05D000161 ORTHO05D000111 6.6e-09 66.6 45 68.9
arahy.Tifrunner.gnm1.ann1.K43FII Arachis hypogaea HOM05D005870 ORTHO05D007216 8.6e-09 66.2 37 89.2
arahy.Tifrunner.gnm1.ann1.Q6429D Arachis hypogaea HOM05D005870 ORTHO05D007216 8.6e-09 66.2 37 89.2
Psat7g055240 Pisum sativum HOM05D005870 ORTHO05D007216 1.1e-08 65.9 38 84.2
C02p63940 Brassica napus HOM05D000382 ORTHO05D000391 1.5e-08 65.5 68 60.3
Aa31LG1G16740 Aethionema arabicum HOM05D005870 ORTHO05D007216 4.3e-08 63.9 62 62.9
Lj2A546G34 Lonicera japonica HOM05D005870 ORTHO05D007216 7.3e-08 63.2 161 35.4
MD01G1031300 Malus domestica HOM05D005870 ORTHO05D007216 2.1e-07 61.6 37 81.1
Mapoly0011s0026 Marchantia polymorpha HOM05D005870 ORTHO05D007216 2.1e-07 61.6 41 73.2
Pp3c9_19800 Physcomitrium patens HOM05D005870 ORTHO05D007216 2.1e-07 61.6 41 73.2
A02p43790 Brassica napus HOM05D005870 ORTHO05D007216 2.8e-07 61.2 37 78.4
BraA02t09303Z Brassica rapa HOM05D005870 ORTHO05D007216 2.8e-07 61.2 37 78.4
Hund13620 Selenicereus undatus HOM05D005870 ORTHO05D007216 3.6e-07 60.8 52 61.5
MELO3C018954.2 Cucumis melo HOM05D005870 ORTHO05D007216 8.0e-07 59.7 62 59.7
SMO347G0042 Selaginella moellendorffii HOM05D005870 ORTHO05D007216 8.0e-07 59.7 48 64.6
THA.LOC104801696 Tarenaya hassleriana HOM05D005870 ORTHO05D007216 8.0e-07 59.7 62 59.7
AagrBONN_evm.TU.Sc2ySwM_117.2528 Anthoceros agrestis HOM05D005870 ORTHO05D007216 1.0e-06 59.3 40 70.0
CsaV3_4G008900 Cucumis sativus L. HOM05D005870 ORTHO05D007216 1.0e-06 59.3 62 59.7
Cfa001686 Carpinus fangiana HOM05D009730 ORTHO05D124314 3.1e-06 57.8 174 32.8
TWI74G0695 Tripterygium wilfordii HOM05D005870 ORTHO05D007216 5.2e-06 57.0 62 59.7


User provided reference genes

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