Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24910 Corylus avellana HOM05D005879 ORTHO05D007432 3.6e-183 644.8 335 100.0
Haze_24914 Corylus avellana HOM05D005879 ORTHO05D007432 3.6e-183 644.8 335 100.0
Cfa017077 Carpinus fangiana HOM05D005879 ORTHO05D007432 1.6e-175 619.4 337 95.8
CiPaw.03G142700 Carya illinoinensis HOM05D005879 ORTHO05D007432 9.3e-147 523.9 337 79.5
QL06p049237 Quercus lobata HOM05D005879 ORTHO05D007432 3.3e-136 488.8 341 75.4
ClCG07G017360 Citrullus lanatus HOM05D005879 ORTHO05D007432 1.7e-124 449.9 324 69.4
MD05G1043000 Malus domestica HOM05D005879 ORTHO05D007432 1.2e-122 443.7 329 71.4
CsaV3_4G004590 Cucumis sativus L. HOM05D005879 ORTHO05D007432 3.9e-121 438.7 329 67.8
CsaV3_UNG120970 Cucumis sativus L. HOM05D005879 ORTHO05D007432 3.9e-121 438.7 329 67.8
CsaV3_UNG160200 Cucumis sativus L. HOM05D005879 ORTHO05D007432 3.9e-121 438.7 329 67.8
CsaV3_UNG223580 Cucumis sativus L. HOM05D005879 ORTHO05D007432 3.9e-121 438.7 329 67.8
MELO3C017607.2 Cucumis melo HOM05D005879 ORTHO05D007432 1.4e-118 430.3 325 67.7
RcHm_v2.0_Chr2g0113151 Rosa chinensis HOM05D005879 ORTHO05D007432 3.1e-118 429.1 329 68.4
Sed0022481 Sechium edule HOM05D005879 ORTHO05D007432 4.1e-118 428.7 325 67.7
Prupe.6G188100 Prunus persica HOM05D005879 ORTHO05D007432 2.0e-117 426.4 329 69.6
TWI77G0137 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 7.7e-117 424.5 332 66.9
Gohir.A11G202400 Gossypium hirsutum HOM05D005879 ORTHO05D007432 1.2e-114 417.2 333 65.5
FAN26G1261 Fragaria x ananassa HOM05D005879 ORTHO05D007432 1.6e-114 416.8 326 68.7
Lj4g0026645 Lotus japonicus HOM05D005879 ORTHO05D007432 1.4e-113 413.7 337 65.6
TWI81G0999 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 3.0e-113 412.5 330 66.7
FvH4_1g20700 Fragaria vesca HOM05D005879 ORTHO05D007432 3.3e-112 409.1 328 67.1
Lalb_Chr06g0163471 Lupinus albus HOM05D005879 ORTHO05D007432 3.3e-112 409.1 324 66.4
TPR.G6200 Trifolium pratense HOM05D005879 ORTHO05D007432 7.5e-112 407.9 353 61.8
Dinv21896 Davidia involucrata HOM05D005879 ORTHO05D007432 1.4e-110 403.7 327 62.1
Medtr8g090180 Medicago truncatula HOM05D005879 ORTHO05D007432 1.4e-110 403.7 326 65.0
THA.LOC104807688 Tarenaya hassleriana HOM05D005879 ORTHO05D007432 3.1e-110 402.5 330 64.2
Gohir.D11G220800 Gossypium hirsutum HOM05D005879 ORTHO05D007432 1.2e-109 400.6 329 64.1
Gorai.007G237000 Gossypium raimondii HOM05D005879 ORTHO05D007432 1.6e-109 400.2 329 64.1
Nn2g14007 Nelumbo nucifera HOM05D005879 ORTHO05D007432 1.6e-109 400.2 327 62.1
Cpa.g.sc615.1 Carica papaya HOM05D005879 ORTHO05D007432 3.5e-109 399.1 318 64.2
Eucgr.B03900 Eucalyptus grandis HOM05D005879 ORTHO05D007432 1.0e-108 397.5 328 63.4
TAR381G0927 Trochodendron aralioides HOM05D005879 ORTHO05D007432 1.1e-107 394.0 329 60.2
arahy.Tifrunner.gnm1.ann1.Y76I0L Arachis hypogaea HOM05D005879 ORTHO05D007432 1.9e-107 393.3 330 62.1
AL7G12180 Arabidopsis lyrata HOM05D005879 ORTHO05D007432 2.5e-107 392.9 329 64.1
CARHR246770 Cardamine hirsuta HOM05D005879 ORTHO05D007432 3.2e-107 392.5 326 65.3
Carub.0007s0187 Capsella rubella HOM05D005879 ORTHO05D007432 7.2e-107 391.3 331 63.1
COL.COLO4_27255 Corchorus olitorius HOM05D005879 ORTHO05D007432 1.2e-106 390.6 319 64.6
VMungo0251G0721 Vigna mungo HOM05D005879 ORTHO05D007432 1.6e-106 390.2 330 62.7
Ca_17743_v3 Cicer arietinum L. HOM05D005879 ORTHO05D007432 1.4e-105 387.1 335 63.6
Glyma.08G134800 Glycine max HOM05D005879 ORTHO05D007432 3.0e-105 386.0 329 62.9
arahy.Tifrunner.gnm1.ann1.F9QSZL Arachis hypogaea HOM05D005879 ORTHO05D007432 6.8e-105 384.8 331 60.4
Sp7g35960 Schrenkiella parvula HOM05D005879 ORTHO05D007432 2.6e-104 382.9 328 62.2
Aa31LG6G15340 Aethionema arabicum HOM05D005879 ORTHO05D007432 4.4e-104 382.1 325 62.5
PSO339G2019 Papaver somniferum HOM05D005879 ORTHO05D007432 5.7e-104 381.7 329 60.5
Manes.12G134100 Manihot esculenta HOM05D005879 ORTHO05D007432 1.3e-103 380.6 328 59.1
PSO801G0022 Papaver somniferum HOM05D005879 ORTHO05D007432 1.3e-103 380.6 329 59.9
Ah.11g050680 Amaranthus hybridus HOM05D005879 ORTHO05D007432 8.3e-103 377.9 327 59.6
Atru.chr7.1487 Acer truncatum HOM05D005879 ORTHO05D007432 1.1e-102 377.5 325 62.5
Hma1.2p1_0308F.1_g120270 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 3.1e-102 375.9 326 62.3
Phvul.002G256800 Phaseolus vulgaris HOM05D005879 ORTHO05D007432 3.1e-102 375.9 332 60.8
Sopen05g031350 Solanum pennellii HOM05D005879 ORTHO05D007432 3.1e-102 375.9 332 61.7
Solyc05g052840.1 Solanum lycopersicum HOM05D005879 ORTHO05D007432 4.1e-102 375.6 332 61.7
AT4G39920 Arabidopsis thaliana HOM05D005879 ORTHO05D007432 1.6e-101 373.6 332 62.7
AUR62028624 Chenopodium quinoa HOM05D005879 ORTHO05D007432 2.7e-101 372.9 327 59.3
Sc05g0001510 Simmondsia chinensis HOM05D005879 ORTHO05D007432 5.9e-101 371.7 325 58.8
PGSC0003DMG400027189 Solanum tuberosum HOM05D005879 ORTHO05D007432 2.3e-100 369.8 332 60.8
Cc07_g15080 Coffea canephora HOM05D005879 ORTHO05D007432 3.8e-100 369.0 331 60.1
AUR62008049 Chenopodium quinoa HOM05D005879 ORTHO05D007432 5.0e-100 368.6 327 58.1
EL10Ac5g10569 Beta vulgaris HOM05D005879 ORTHO05D007432 8.6e-100 367.9 327 58.4
Duzib147G1529 Durio zibethinus HOM05D005879 ORTHO05D007432 8.6e-100 367.9 284 65.1
BolC7t46692H Brassica oleracea HOM05D005879 ORTHO05D007432 3.2e-99 365.9 334 60.2
Ciclev10020973m.g Citrus clementina HOM05D005879 ORTHO05D007432 5.5e-99 365.2 330 60.0
Thhalv10025595m.g Eutrema salsugineum HOM05D005879 ORTHO05D007432 5.5e-99 365.2 326 61.7
Sabra05G0061500 Salix brachista HOM05D005879 ORTHO05D007432 5.5e-99 365.2 333 58.3
Potri.005G074700 Populus trichocarpa HOM05D005879 ORTHO05D007432 1.6e-98 363.6 329 58.4
BraA03t15633Z Brassica rapa HOM05D005879 ORTHO05D007432 2.1e-98 363.2 333 60.7
Glyma.05G177800 Glycine max HOM05D005879 ORTHO05D007432 3.6e-98 362.5 336 60.4
A03p65800 Brassica napus HOM05D005879 ORTHO05D007432 4.7e-98 362.1 333 60.4
Nitab4.5_0009581g0010 Nicotiana tabacum HOM05D005879 ORTHO05D007432 4.7e-98 362.1 332 59.3
HanXRQChr17g0554861 Helianthus annuus HOM05D005879 ORTHO05D007432 2.3e-97 359.8 325 56.6
C07p62780 Brassica napus HOM05D005879 ORTHO05D007432 3.0e-97 359.4 339 59.6
Thecc.01G100600 Theobroma cacao HOM05D005879 ORTHO05D007432 1.2e-96 357.5 284 62.7
FAN19G0980 Fragaria x ananassa HOM05D005879 ORTHO05D007432 4.4e-96 355.5 335 59.1
Peaxi162Scf00054g00186 Petunia axillaris HOM05D005879 ORTHO05D007432 9.8e-96 354.4 325 57.5
vmacro12962 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 1.3e-95 354.0 358 54.7
MBI05_g37046_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 1.7e-95 353.6 341 56.3
PSO170G2230 Papaver somniferum HOM05D005879 ORTHO05D007432 1.7e-95 353.6 320 56.6
Oeu032409.1 Olea europaea HOM05D005879 ORTHO05D007432 8.3e-95 351.3 340 58.2
DCAR_003483 Daucus carota HOM05D005879 ORTHO05D007432 5.4e-94 348.6 329 58.4
Aqoxy3G00238 Aquilegia oxysepala HOM05D005879 ORTHO05D007432 9.2e-94 347.8 331 56.2
CAN.G151.26 Capsicum annuum HOM05D005879 ORTHO05D007432 9.2e-94 347.8 330 58.2
ECA233G0618 Erigeron canadensis HOM05D005879 ORTHO05D007432 7.8e-93 344.7 325 53.2
PGR102G2441 Punica granatum HOM05D005879 ORTHO05D007432 2.3e-92 343.2 279 62.0
SGA_v2.0_scaffold115G32189 Striga asiatica HOM05D005879 ORTHO05D007432 2.3e-92 343.2 338 57.4
MSTRG.3773 Avicennia marina HOM05D005879 ORTHO05D007432 3.8e-92 342.4 335 56.4
SalBow7G4497 Salvia bowleyana HOM05D005879 ORTHO05D007432 3.8e-92 342.4 329 58.4
SGA_v2.0_scaffold334G49051 Striga asiatica HOM05D005879 ORTHO05D007432 5.0e-92 342.0 338 57.4
Rhsim01G0133800 Rhododendron simsii HOM05D005879 ORTHO05D007432 1.5e-91 340.5 360 53.1
RhsimUnG0233600 Rhododendron simsii HOM05D005879 ORTHO05D007432 1.5e-91 340.5 360 53.1
Migut.L00135 Erythranthe guttata HOM05D005879 ORTHO05D007432 4.3e-91 339.0 332 54.8
Lsat_1_v5_gn_8_137181 Lactuca sativa HOM05D005879 ORTHO05D007432 9.5e-91 337.8 324 54.3
unitig_32.g10701 Utricularia gibba HOM05D005879 ORTHO05D007432 6.1e-90 335.1 336 56.8
ATR0584G053 Amborella trichopoda HOM05D005879 ORTHO05D007432 1.4e-89 334.0 327 54.1
vmacro17311 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 7.0e-86 321.6 326 54.6
HPP92_013925 Vanilla planifolia HOM05D005879 ORTHO05D007432 1.1e-81 307.8 335 50.1
CDE04G0616 Ceratophyllum demersum HOM05D005879 ORTHO05D007432 7.5e-80 301.6 331 47.4
Zm00001eb243870 Zea mays HOM05D005879 ORTHO05D007432 9.2e-78 294.7 330 49.7
VMungo0540G1211 Vigna mungo HOM05D005879 ORTHO05D007432 4.3e-75 285.8 212 65.6
Os02g0557000 Oryza sativa ssp. japonica HOM05D005879 ORTHO05D007432 1.1e-73 281.2 324 48.8
Hma1.2p1_0308F.1_g120280 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 1.4e-73 280.8 190 71.1
Atru.chr11.1549 Acer truncatum HOM05D005879 ORTHO05D007432 6.6e-68 261.9 168 70.8
Mapoly0002s0046 Marchantia polymorpha HOM05D005879 ORTHO05D007432 3.6e-66 256.1 344 43.3
arahy.Tifrunner.gnm1.ann1.DH96WI Arachis hypogaea HOM05D005879 ORTHO05D007432 8.9e-65 251.5 295 48.5
AagrBONN_evm.TU.Sc2ySwM_117.1918 Anthoceros agrestis HOM05D005879 ORTHO05D007432 5.8e-64 248.8 328 40.9
Pp3c13_2250 Physcomitrium patens HOM05D005879 ORTHO05D007432 2.9e-63 246.5 325 44.3
SMO143G0283 Selaginella moellendorffii HOM05D005879 ORTHO05D007432 1.2e-61 241.1 330 40.9
Psat7g055120 Pisum sativum HOM05D005879 ORTHO05D007432 1.5e-59 234.2 328 44.5
FAN23G0004 Fragaria x ananassa HOM05D005879 ORTHO05D007432 3.3e-59 233.0 129 84.5
SEGI_25682 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 1.6e-58 230.7 207 54.1
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 2.4e-57 226.9 362 39.2
Atru.chr7.1491 Acer truncatum HOM05D005879 ORTHO05D007432 5.2e-57 225.7 243 55.1
MD01G1031400 Malus domestica HOM05D005879 ORTHO05D007432 7.3e-51 205.3 130 73.1
C03p78540 Brassica napus HOM05D005879 ORTHO05D007432 1.3e-50 204.5 307 47.6
Potri.007G093800 Populus trichocarpa HOM05D005879 ORTHO05D007432 3.4e-48 196.4 226 48.7
MCO11G662 Micromonas commoda HOM05D005879 ORTHO05D007432 6.0e-45 185.7 343 35.6
BcaB03g12293 Brassica carinata HOM05D005879 ORTHO05D007432 3.0e-44 183.3 210 52.9
BolC3t20106H Brassica oleracea HOM05D005879 ORTHO05D007432 8.1e-42 175.3 307 43.0
PRCOL_00003435 Prasinoderma coloniale HOM05D005879 ORTHO05D007432 2.1e-37 160.6 333 33.9
Actinidia28237 Actinidia chinensis HOM05D005879 ORTHO05D007432 6.0e-37 159.1 327 35.8
HPP92_014012 Vanilla planifolia HOM05D005879 ORTHO05D007432 2.5e-35 153.7 229 43.7
Migut.L00117 Erythranthe guttata HOM05D005879 ORTHO05D007432 1.9e-30 137.5 86 73.3
Cre03.g200150 Chlamydomonas reinhardtii HOM05D005879 ORTHO05D007432 1.2e-29 134.8 334 30.2
BcaNung02300 Brassica carinata HOM05D005879 ORTHO05D007432 3.9e-28 129.8 137 56.2
GSVIVG01004856001 Vitis vinifera HOM05D005879 ORTHO05D007432 2.5e-27 127.1 123 62.6
MBI15_g14577_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 1.5e-24 117.9 87 62.1
BraA08t34278Z Brassica rapa HOM05D005879 ORTHO05D007432 7.2e-22 109.0 62 79.0
Hma1.2p1_0297F.1_g117050 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 7.9e-21 105.5 125 49.6
PRCOL_00004923 Prasinoderma coloniale HOM05D005879 ORTHO05D034414 6.3e-18 95.9 164 32.3
A08p23210 Brassica napus HOM05D005879 ORTHO05D007432 3.4e-16 90.1 60 68.3
SEGI_41531 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 1.0e-15 88.6 132 43.9
Medtr1g108500 Medicago truncatula HOM05D011368 ORTHO05D000135 2.3e-12 77.4 106 41.5
Pp3c4_21480 Physcomitrium patens HOM05D005879 ORTHO05D007432 2.6e-08 63.9 58 55.2
Cfa025806 Carpinus fangiana HOM05D005879 ORTHO05D123935 3.2e-06 57.0 123 26.0
MCO14G569 Micromonas commoda HOM05D033910 ORTHO05D034414 3.2e-06 57.0 201 24.9


User provided reference genes

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