Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 5.3e-154 547.7 296 100.0
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 7.0e-154 547.4 296 99.7
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 7.0e-146 520.8 296 95.6
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 3.3e-103 379.0 312 72.4
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 5.1e-80 302.0 311 61.7
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 7.6e-76 288.1 306 61.4
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 1.3e-75 287.3 315 60.0
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 7.9e-73 278.1 297 61.3
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 1.5e-71 273.9 302 60.6
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 1.9e-71 273.5 301 59.1
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 3.3e-71 272.7 298 58.7
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 2.1e-70 270.0 308 58.8
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 6.9e-69 265.0 221 68.8
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 2.6e-68 263.1 299 57.9
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 5.8e-68 261.9 295 57.3
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 1.0e-67 261.2 251 64.5
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.0e-67 261.2 307 57.3
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 2.9e-67 259.6 294 55.1
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 2.9e-67 259.6 296 56.1
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 1.1e-66 257.7 272 58.5
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 1.4e-66 257.3 267 62.5
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 1.4e-66 257.3 306 54.9
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 7.1e-66 255.0 306 54.2
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 7.1e-66 255.0 295 56.3
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 9.3e-66 254.6 301 57.8
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 1.0e-64 251.1 244 61.9
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 1.8e-64 250.4 301 54.8
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 3.0e-64 249.6 298 55.4
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 3.9e-64 249.2 310 53.2
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 6.7e-64 248.4 301 54.5
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.9e-63 246.9 218 66.5
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 5.7e-63 245.4 218 66.1
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 1.3e-62 244.2 302 54.6
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 2.8e-62 243.0 281 56.9
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 1.1e-61 241.1 303 53.1
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 1.8e-61 240.4 300 54.7
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 6.9e-61 238.4 225 64.0
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 1.2e-60 237.7 273 56.4
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 1.5e-60 237.3 219 63.9
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 3.4e-60 236.1 256 57.0
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 1.0e-59 234.6 316 51.9
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 1.3e-59 234.2 319 51.4
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 1.7e-59 233.8 250 58.8
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 2.2e-59 233.4 219 63.9
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 3.8e-59 232.6 307 51.8
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 3.8e-59 232.6 260 54.6
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 8.5e-59 231.5 289 54.0
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 1.4e-58 230.7 317 51.4
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 2.5e-58 229.9 246 57.7
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 7.2e-58 228.4 274 54.4
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.6e-57 227.3 224 62.9
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 2.1e-57 226.9 243 59.7
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.1e-57 226.9 225 61.8
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 4.6e-57 225.7 313 51.1
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 6.1e-57 225.3 243 59.3
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 6.1e-57 225.3 246 56.1
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 6.1e-57 225.3 311 50.5
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 1.0e-56 224.6 308 51.9
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 1.8e-56 223.8 309 52.8
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 2.3e-56 223.4 216 64.4
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.5e-55 220.7 286 54.2
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 1.9e-55 220.3 211 59.2
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 2.5e-55 219.9 310 49.4
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 3.3e-55 219.5 242 57.4
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 1.6e-54 217.2 216 63.4
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 2.8e-54 216.5 159 76.7
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 2.8e-54 216.5 251 55.8
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 4.8e-54 215.7 279 51.6
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 4.8e-54 215.7 170 72.4
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 6.3e-54 215.3 268 54.5
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 8.2e-54 214.9 286 53.5
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 1.8e-53 213.8 307 47.9
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 2.4e-53 213.4 199 61.8
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 4.1e-53 212.6 299 49.8
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 4.1e-53 212.6 289 51.9
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 1.5e-52 210.7 319 48.3
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 4.5e-52 209.1 219 57.5
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 5.9e-52 208.8 258 51.6
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 7.7e-52 208.4 255 51.8
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 7.7e-52 208.4 255 51.8
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 1.0e-51 208.0 255 51.8
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 1.3e-51 207.6 309 47.9
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 1.7e-51 207.2 236 54.7
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 1.7e-51 207.2 281 49.5
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 5.0e-51 205.7 283 48.8
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 6.5e-51 205.3 283 49.8
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 1.1e-50 204.5 283 48.4
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 1.1e-50 204.5 207 61.4
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 1.9e-50 203.8 227 55.9
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 1.9e-50 203.8 293 47.8
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 3.2e-50 203.0 284 49.6
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 4.2e-50 202.6 289 51.6
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 7.2e-50 201.8 283 48.1
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 7.2e-50 201.8 283 48.1
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 7.2e-50 201.8 315 45.7
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 2.7e-49 199.9 308 46.1
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 3.6e-49 199.5 272 49.6
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 7.9e-49 198.4 236 53.0
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 1.4e-48 197.6 253 52.2
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.8e-48 197.2 305 46.6
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 1.8e-48 197.2 210 60.5
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 2.3e-48 196.8 271 48.7
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 2.3e-48 196.8 307 46.3
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 2.3e-48 196.8 305 46.6
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 3.3e-47 193.0 304 46.1
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 3.3e-47 193.0 338 42.0
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 4.4e-47 192.6 307 44.6
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 7.4e-47 191.8 364 41.5
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 3.1e-45 186.4 262 49.2
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.2e-44 184.5 241 53.5
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 1.5e-44 184.1 154 67.5
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 2.0e-44 183.7 167 66.5
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 3.4e-44 183.0 191 59.2
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 1.9e-42 177.2 236 48.3
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 4.2e-42 176.0 257 46.3
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 7.9e-41 171.8 127 77.2
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 5.2e-40 169.1 140 70.0
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 2.4e-37 160.2 135 67.4
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 5.3e-37 159.1 140 67.9
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 2.0e-36 157.1 192 53.6
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 3.5e-36 156.4 214 48.6
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 7.7e-36 155.2 140 62.9
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 1.3e-35 154.5 119 71.4
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 2.2e-35 153.7 230 45.7
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 2.9e-35 153.3 186 54.3
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 3.2e-34 149.8 199 50.3
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 1.2e-33 147.9 116 74.1
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 1.6e-33 147.5 145 62.1
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 1.4e-32 144.4 151 60.3
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 6.7e-32 142.1 166 53.0
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 1.7e-27 127.5 97 72.2
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.1e-25 120.6 118 61.9
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.7e-22 110.9 177 45.2
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.1e-21 108.2 103 57.3
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.9e-19 100.1 101 61.4
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 6.5e-19 99.0 204 37.3
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 1.2e-17 94.7 220 37.7
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 8.0e-17 92.0 88 64.8
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.0e-16 91.7 61 82.0
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 5.7e-15 85.9 116 53.4
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 5.7e-15 85.9 222 34.2
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 3.7e-14 83.2 180 35.0
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 3.7e-14 83.2 78 56.4
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 8.3e-14 82.0 139 47.5
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 4.1e-13 79.7 218 33.0
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 7.8e-12 75.5 46 89.1
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 8.6e-11 72.0 49 83.7
Actinidia30832 Actinidia chinensis HOM05D005154 ORTHO05D006270 2.8e-09 67.0 229 31.4
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 6.8e-08 62.4 134 34.3


User provided reference genes

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