Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24865 Corylus avellana HOM05D002260 ORTHO05D000476 7.8e-64 247.7 203 100.0
Cfa007881 Carpinus fangiana HOM05D001628 ORTHO05D001568 7.4e-22 108.2 71 78.9
Haze_09056 Corylus avellana HOM05D002260 ORTHO05D000476 8.5e-18 94.7 104 57.7
Cfa012018 Carpinus fangiana HOM05D002260 ORTHO05D000476 1.2e-16 90.9 93 61.3
Haze_09051 Corylus avellana HOM05D002260 ORTHO05D000476 2.1e-16 90.1 104 55.8
Haze_09050 Corylus avellana HOM05D000968 ORTHO05D001687 5.3e-12 75.5 99 52.5
Ciclev10024304m.g Citrus clementina HOM05D002260 ORTHO05D000476 1.4e-09 67.4 73 50.7
Medtr4g102250 Medicago truncatula HOM05D002260 ORTHO05D000476 5.5e-09 65.5 104 40.4
Sed0001700 Sechium edule HOM05D002260 ORTHO05D000476 9.4e-09 64.7 87 44.8
MD04G1079300 Malus domestica HOM05D002260 ORTHO05D000476 1.2e-08 64.3 73 46.6
QL08p053405 Quercus lobata HOM05D002260 ORTHO05D000476 1.2e-08 64.3 93 50.5
Dinv39075 Davidia involucrata HOM05D002260 ORTHO05D000476 1.6e-08 63.9 73 46.6
CSS0026380 Camellia sinensis var. sinensis HOM05D002260 ORTHO05D000476 2.1e-08 63.5 73 50.7
CSS0048208 Camellia sinensis var. sinensis HOM05D002260 ORTHO05D000476 2.1e-08 63.5 73 50.7
Potri.001G117400 Populus trichocarpa HOM05D002260 ORTHO05D000476 2.1e-08 63.5 73 47.9
Potri.003G115400 Populus trichocarpa HOM05D002260 ORTHO05D000476 3.6e-08 62.8 73 49.3
TWI60G0875 Tripterygium wilfordii HOM05D002260 ORTHO05D000476 3.6e-08 62.8 73 47.9
Duzib205G0587 Durio zibethinus HOM05D002260 ORTHO05D000476 6.1e-08 62.0 81 45.7
TPR.G37659 Trifolium pratense HOM05D002260 ORTHO05D000476 6.1e-08 62.0 108 40.7
COL.COLO4_23876 Corchorus olitorius HOM05D002260 ORTHO05D000476 7.9e-08 61.6 66 51.5
vmacro14040 Vaccinium macrocarpon HOM05D002260 ORTHO05D000476 7.9e-08 61.6 97 40.2
Manes.01G073400 Manihot esculenta HOM05D002260 ORTHO05D000476 1.0e-07 61.2 73 49.3
TAR636G2587 Trochodendron aralioides HOM05D002260 ORTHO05D000476 1.0e-07 61.2 84 44.0
Cc08_g13260 Coffea canephora HOM05D002260 ORTHO05D000476 1.4e-07 60.8 72 45.8
CsaV3_3G003220 Cucumis sativus L. HOM05D002260 ORTHO05D000476 1.4e-07 60.8 85 41.2
BcaNung02481 Brassica carinata HOM05D002260 ORTHO05D000476 2.3e-07 60.1 53 56.6
CARHR229660 Cardamine hirsuta HOM05D002260 ORTHO05D000476 2.3e-07 60.1 53 56.6
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 2.3e-07 60.1 104 38.5
Psat4g068560 Pisum sativum HOM05D002260 ORTHO05D000476 2.3e-07 60.1 93 38.7
A08p15950 Brassica napus HOM05D002260 ORTHO05D000476 3.0e-07 59.7 49 59.2
BraA08t33568Z Brassica rapa HOM05D002260 ORTHO05D000476 3.0e-07 59.7 49 59.2
Duzib084G1438 Durio zibethinus HOM05D002260 ORTHO05D000476 3.0e-07 59.7 70 48.6
Rhsim07G0101300 Rhododendron simsii HOM05D002260 ORTHO05D000476 3.0e-07 59.7 73 45.2
RcHm_v2.0_Chr7g0201491 Rosa chinensis HOM05D002260 ORTHO05D000476 3.0e-07 59.7 70 47.1
C07p52100 Brassica napus HOM05D002260 ORTHO05D000476 3.9e-07 59.3 53 56.6
BcaC01g00796 Brassica carinata HOM05D002260 ORTHO05D000476 6.7e-07 58.5 85 43.5
Thhalv10025744m.g Eutrema salsugineum HOM05D002260 ORTHO05D000476 6.7e-07 58.5 53 56.6
Prupe.5G079800 Prunus persica HOM05D002260 ORTHO05D000476 6.7e-07 58.5 69 44.9
Thecc.03G262100 Theobroma cacao HOM05D002260 ORTHO05D000476 6.7e-07 58.5 75 48.0
TWI81G0464 Tripterygium wilfordii HOM05D002260 ORTHO05D000476 8.8e-07 58.2 103 39.8
Atru.chr9.1435 Acer truncatum HOM05D002260 ORTHO05D000476 1.1e-06 57.8 74 45.9
BcaNung01677 Brassica carinata HOM05D002260 ORTHO05D000476 1.1e-06 57.8 53 54.7
Carub.0007s1857 Capsella rubella HOM05D002260 ORTHO05D000476 1.1e-06 57.8 59 52.5
Sp7g20770 Schrenkiella parvula HOM05D002260 ORTHO05D000476 1.1e-06 57.8 80 42.5
A03p53720 Brassica napus HOM05D002260 ORTHO05D000476 1.5e-06 57.4 53 54.7
BolC3t20726H Brassica oleracea HOM05D002260 ORTHO05D000476 1.5e-06 57.4 49 57.1
BolC7t45702H Brassica oleracea HOM05D002260 ORTHO05D000476 1.5e-06 57.4 65 49.2
MELO3C013988.2 Cucumis melo HOM05D002260 ORTHO05D000476 1.5e-06 57.4 87 41.4
Gohir.A03G011700 Gossypium hirsutum HOM05D002260 ORTHO05D000476 1.5e-06 57.4 97 40.2
Gohir.D03G158200 Gossypium hirsutum HOM05D002260 ORTHO05D000476 1.5e-06 57.4 97 40.2
Gorai.003G166700 Gossypium raimondii HOM05D002260 ORTHO05D000476 1.5e-06 57.4 97 40.2
Nn3g17304 Nelumbo nucifera HOM05D002260 ORTHO05D000476 1.5e-06 57.4 91 41.8
CDE12G0525 Ceratophyllum demersum HOM05D002260 ORTHO05D000476 2.0e-06 57.0 65 47.7
Duzib068G0431 Durio zibethinus HOM05D002260 ORTHO05D000476 2.0e-06 57.0 75 45.3
Gohir.D11G020300 Gossypium hirsutum HOM05D002260 ORTHO05D000476 2.0e-06 57.0 76 44.7
Oeu022407.1 Olea europaea HOM05D002260 ORTHO05D000476 2.0e-06 57.0 78 41.0
Oeu022408.1 Olea europaea HOM05D002260 ORTHO05D000476 2.0e-06 57.0 78 41.0
Lalb_Chr05g0225381 Lupinus albus HOM05D002260 ORTHO05D000476 2.6e-06 56.6 79 41.8
Nn4g26379 Nelumbo nucifera HOM05D002260 ORTHO05D000476 2.6e-06 56.6 99 40.4
BraA03t14434Z Brassica rapa HOM05D002260 ORTHO05D000476 3.3e-06 56.2 51 54.9
C03p84380 Brassica napus HOM05D002260 ORTHO05D000476 4.4e-06 55.8 48 56.2
Gorai.007G021600 Gossypium raimondii HOM05D002260 ORTHO05D000476 4.4e-06 55.8 76 43.4
Actinidia05172 Actinidia chinensis HOM05D002260 ORTHO05D000476 5.7e-06 55.5 73 42.5
Gohir.A11G020600 Gossypium hirsutum HOM05D002260 ORTHO05D000476 5.7e-06 55.5 78 43.6
AT4G22740 Arabidopsis thaliana HOM05D002260 ORTHO05D000476 7.4e-06 55.1 59 47.5
Os06g0134900 Oryza sativa ssp. japonica HOM05D002260 ORTHO05D000476 7.4e-06 55.1 51 49.0
Dinv37761 Davidia involucrata HOM05D002260 ORTHO05D000476 9.7e-06 54.7 73 41.1


User provided reference genes

Program Settings