Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24835 Corylus avellana HOM05D005553 ORTHO05D006866 0.0e+00 1079.3 537 100.0
Cfa002842 Carpinus fangiana HOM05D005553 ORTHO05D006866 2.7e-289 998.0 591 86.5
Haze_24838 Corylus avellana HOM05D005553 ORTHO05D006866 4.8e-286 987.3 537 93.3
MD10G1161200 Malus domestica HOM05D005553 ORTHO05D006866 5.9e-220 767.7 601 69.1
Prupe.8G200200 Prunus persica HOM05D005553 ORTHO05D006866 5.9e-220 767.7 603 69.0
CiPaw.03G146800 Carya illinoinensis HOM05D005553 ORTHO05D006866 3.6e-217 758.4 511 75.5
RcHm_v2.0_Chr6g0284311 Rosa chinensis HOM05D005553 ORTHO05D006866 3.1e-216 755.4 603 67.5
CANSAT01G0440 Cannabis sativa HOM05D005553 ORTHO05D006866 1.2e-215 753.4 590 66.9
Dinv12662 Davidia involucrata HOM05D005553 ORTHO05D006866 4.6e-212 741.5 608 66.0
CSS0002030 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 3.3e-210 735.3 599 65.9
FAN27G0725 Fragaria x ananassa HOM05D005553 ORTHO05D006866 3.7e-206 721.8 585 65.5
Cpa.g.sc8.131 Carica papaya HOM05D005553 ORTHO05D006866 6.0e-204 714.5 608 64.1
QL09p052121 Quercus lobata HOM05D005553 ORTHO05D006866 3.0e-203 712.2 598 65.9
QL09p052989 Quercus lobata HOM05D005553 ORTHO05D006866 3.0e-203 712.2 597 66.3
TWI36G0825 Tripterygium wilfordii HOM05D005553 ORTHO05D006866 3.9e-203 711.8 588 65.5
FvH4_2g18680 Fragaria vesca HOM05D005553 ORTHO05D006866 6.6e-203 711.1 605 64.3
Manes.13G047900 Manihot esculenta HOM05D005553 ORTHO05D006866 6.6e-203 711.1 610 63.4
FAN24G0205 Fragaria x ananassa HOM05D005553 ORTHO05D006866 1.9e-202 709.5 605 64.1
PGR044G2083 Punica granatum HOM05D005553 ORTHO05D006866 8.1e-201 704.1 595 62.0
vmacro14742 Vaccinium macrocarpon HOM05D005553 ORTHO05D006866 1.4e-200 703.4 607 62.8
Ciclev10019403m.g Citrus clementina HOM05D005553 ORTHO05D006866 4.4e-199 698.4 582 64.3
Hma1.2p1_1018F.1_g248400 Hydrangea macrophylla HOM05D005553 ORTHO05D006866 4.9e-198 694.9 564 65.8
Oeu023098.1 Olea europaea HOM05D005553 ORTHO05D006866 3.2e-197 692.2 572 62.9
CsaV3_6G002380 Cucumis sativus L. HOM05D005553 ORTHO05D006866 4.1e-197 691.8 605 60.3
Gorai.001G232700 Gossypium raimondii HOM05D005553 ORTHO05D006866 2.1e-196 689.5 598 63.0
Potri.002G245000 Populus trichocarpa HOM05D005553 ORTHO05D006866 3.5e-196 688.7 602 63.8
CSS0038931 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 7.8e-196 687.6 599 63.6
Eucgr.K02143 Eucalyptus grandis HOM05D005553 ORTHO05D006866 7.8e-196 687.6 605 60.5
Gohir.D07G206400 Gossypium hirsutum HOM05D005553 ORTHO05D006866 8.6e-195 684.1 597 63.0
Sabra02G0186400 Salix brachista HOM05D005553 ORTHO05D006866 1.1e-194 683.7 602 63.3
Lalb_Chr03g0041571 Lupinus albus HOM05D005553 ORTHO05D006866 2.5e-194 682.6 594 60.4
Glyma.18G166600 Glycine max HOM05D005553 ORTHO05D006866 7.3e-194 681.0 601 60.1
Thecc.01G222300 Theobroma cacao HOM05D005553 ORTHO05D006866 7.3e-194 681.0 573 65.1
GSVIVG01038357001 Vitis vinifera HOM05D005553 ORTHO05D006866 2.1e-193 679.5 557 66.4
Gohir.A07G200000 Gossypium hirsutum HOM05D005553 ORTHO05D006866 1.1e-192 677.2 597 62.1
Duzib138G1946 Durio zibethinus HOM05D005553 ORTHO05D006866 8.9e-192 674.1 599 61.4
arahy.Tifrunner.gnm1.ann1.K25WW2 Arachis hypogaea HOM05D005553 ORTHO05D006866 5.8e-191 671.4 602 59.5
arahy.Tifrunner.gnm1.ann1.T3HSIJ Arachis hypogaea HOM05D005553 ORTHO05D006866 7.6e-191 671.0 604 59.6
Nn1g07927 Nelumbo nucifera HOM05D005553 ORTHO05D006866 1.7e-190 669.8 595 60.7
COL.COLO4_15644 Corchorus olitorius HOM05D005553 ORTHO05D006866 4.6e-188 661.8 599 61.3
Atru.chr6.1417 Acer truncatum HOM05D005553 ORTHO05D006866 1.3e-187 660.2 579 61.8
PSO063G5023 Papaver somniferum HOM05D005553 ORTHO05D006866 1.3e-187 660.2 592 57.8
MSTRG.17999 Avicennia marina HOM05D005553 ORTHO05D006866 2.3e-187 659.4 608 59.2
PSO782G3165 Papaver somniferum HOM05D005553 ORTHO05D006866 3.0e-187 659.1 592 57.6
PGSC0003DMG400017493 Solanum tuberosum HOM05D005553 ORTHO05D006866 3.9e-187 658.7 598 59.2
HanXRQChr07g0189551 Helianthus annuus HOM05D005553 ORTHO05D006866 8.7e-187 657.5 598 58.9
Medtr7g056117 Medicago truncatula HOM05D005553 ORTHO05D006866 1.5e-186 656.8 600 59.0
Nitab4.5_0000045g0420 Nicotiana tabacum HOM05D005553 ORTHO05D006866 3.3e-186 655.6 623 57.8
Cc01_g16820 Coffea canephora HOM05D005553 ORTHO05D006866 4.3e-186 655.2 562 62.6
AL3G18430 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 7.3e-186 654.4 577 62.2
Sc05g0002010 Simmondsia chinensis HOM05D005553 ORTHO05D006866 7.3e-186 654.4 607 58.6
Ca_24091_v3 Cicer arietinum L. HOM05D005553 ORTHO05D006866 2.1e-185 652.9 593 59.4
Phvul.008G130400 Phaseolus vulgaris HOM05D005553 ORTHO05D006866 2.8e-185 652.5 591 59.6
VMungo1383G1602 Vigna mungo HOM05D005553 ORTHO05D006866 2.8e-185 652.5 601 58.9
Ah.08g214520 Amaranthus hybridus HOM05D005553 ORTHO05D006866 3.6e-185 652.1 607 58.3
Sopen09g022770 Solanum pennellii HOM05D005553 ORTHO05D006866 3.6e-185 652.1 598 58.7
Lj2A1127T50 Lonicera japonica HOM05D005553 ORTHO05D006866 1.1e-184 650.6 583 60.7
Lj1g0021333 Lotus japonicus HOM05D005553 ORTHO05D006866 1.1e-184 650.6 598 59.0
Solyc09g059600.4 Solanum lycopersicum HOM05D005553 ORTHO05D006866 1.1e-184 650.6 598 58.5
Thhalv10020331m.g Eutrema salsugineum HOM05D005553 ORTHO05D006866 1.8e-184 649.8 576 61.1
THA.LOC104818968 Tarenaya hassleriana HOM05D005553 ORTHO05D006866 4.0e-184 648.7 608 59.5
Aqoxy2G03234 Aquilegia oxysepala HOM05D005553 ORTHO05D006866 5.3e-184 648.3 590 56.4
FAN15G3597 Fragaria x ananassa HOM05D005553 ORTHO05D006866 6.9e-184 647.9 636 57.2
Hund05570 Selenicereus undatus HOM05D005553 ORTHO05D006866 2.0e-183 646.4 600 58.2
CAN.G5.44 Capsicum annuum HOM05D005553 ORTHO05D006866 2.6e-183 646.0 586 59.0
Carub.0003s0670 Capsella rubella HOM05D005553 ORTHO05D006866 3.4e-183 645.6 576 60.4
Sed0021986 Sechium edule HOM05D005553 ORTHO05D006866 7.6e-183 644.4 581 60.4
Sp3g06120 Schrenkiella parvula HOM05D005553 ORTHO05D006866 1.3e-182 643.7 594 60.1
Glyma.08G349700 Glycine max HOM05D005553 ORTHO05D006866 1.1e-181 640.6 591 59.2
BcaC05g29748 Brassica carinata HOM05D005553 ORTHO05D006866 5.4e-181 638.3 598 59.4
A05p41030 Brassica napus HOM05D005553 ORTHO05D006866 9.3e-181 637.5 594 59.8
AT3G07180 Arabidopsis thaliana HOM05D005553 ORTHO05D006866 2.1e-180 636.3 576 60.8
CARHR081820 Cardamine hirsuta HOM05D005553 ORTHO05D006866 2.7e-180 636.0 576 60.1
BraA05t22829Z Brassica rapa HOM05D005553 ORTHO05D006866 1.0e-179 634.0 594 59.4
Lsat_1_v5_gn_9_13060 Lactuca sativa HOM05D005553 ORTHO05D006866 1.3e-179 633.6 600 57.2
BcaC05g29847 Brassica carinata HOM05D005553 ORTHO05D006866 1.3e-177 627.1 602 59.1
AL384U10020 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 1.6e-177 626.7 572 60.7
Migut.N00626 Erythranthe guttata HOM05D005553 ORTHO05D006866 2.1e-177 626.3 609 56.0
C05p60190 Brassica napus HOM05D005553 ORTHO05D006866 4.8e-177 625.2 598 59.0
BolC5t34669H Brassica oleracea HOM05D005553 ORTHO05D006866 1.1e-176 624.0 598 58.9
Psat3g147960 Pisum sativum HOM05D005553 ORTHO05D006866 5.3e-176 621.7 601 56.7
Nitab4.5_0000345g0010 Nicotiana tabacum HOM05D005553 ORTHO05D006866 1.9e-173 613.2 662 53.0
PSO339G3667 Papaver somniferum HOM05D005553 ORTHO05D006866 1.2e-172 610.5 577 56.3
MELO3C020015.2 Cucumis melo HOM05D005553 ORTHO05D006866 1.6e-172 610.1 565 58.2
Aa31LG5G17740 Aethionema arabicum HOM05D005553 ORTHO05D006866 2.5e-170 602.8 581 58.0
arahy.Tifrunner.gnm1.ann1.B0WXN9 Arachis hypogaea HOM05D005553 ORTHO05D006866 9.6e-170 600.9 530 58.3
DCAR_023559 Daucus carota HOM05D005553 ORTHO05D006866 3.7e-169 599.0 563 58.3
ClCG09G008830 Citrullus lanatus HOM05D005553 ORTHO05D006866 2.0e-167 593.2 605 54.9
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 5.8e-167 591.7 568 56.0
EL10Ac7g17878 Beta vulgaris HOM05D005553 ORTHO05D006866 6.5e-166 588.2 595 55.0
MBI06_g04543_MAGBIO Magnolia biondii HOM05D005553 ORTHO05D006866 4.2e-165 585.5 607 54.2
Rhsim01G0254300 Rhododendron simsii HOM05D005553 ORTHO05D006866 4.2e-165 585.5 545 59.8
arahy.Tifrunner.gnm1.ann1.62F6YN Arachis hypogaea HOM05D005553 ORTHO05D006866 3.5e-164 582.4 559 56.5
Duzib211G0174 Durio zibethinus HOM05D005553 ORTHO05D006866 3.0e-163 579.3 538 60.0
ECA247G0750 Erigeron canadensis HOM05D005553 ORTHO05D006866 9.6e-162 574.3 588 55.1
Actinidia09473 Actinidia chinensis HOM05D005553 ORTHO05D006866 8.4e-158 561.2 591 55.2
AUR62001118 Chenopodium quinoa HOM05D005553 ORTHO05D006866 8.7e-155 551.2 602 51.5
Peaxi162Scf00238g00217 Petunia axillaris HOM05D005553 ORTHO05D006866 9.0e-152 541.2 565 54.2
CDE08G1475 Ceratophyllum demersum HOM05D005553 ORTHO05D006866 4.5e-151 538.9 583 50.4
Dinv19184 Davidia involucrata HOM05D005553 ORTHO05D006866 3.8e-150 535.8 447 63.1
Actinidia23714 Actinidia chinensis HOM05D005553 ORTHO05D006866 7.2e-149 531.6 598 53.3
ATR0609G062 Amborella trichopoda HOM05D005553 ORTHO05D006866 1.5e-146 523.9 585 49.4
Os01g0907300 Oryza sativa ssp. japonica HOM05D005553 ORTHO05D006866 2.2e-145 520.0 603 50.4
TPR.G6452 Trifolium pratense HOM05D005553 ORTHO05D006866 2.4e-144 516.5 564 52.3
TAR365G1156 Trochodendron aralioides HOM05D005553 ORTHO05D006866 2.1e-140 503.4 440 60.2
Zm00001eb365330 Zea mays HOM05D005553 ORTHO05D006866 3.6e-140 502.7 608 48.7
SalBow3G3653 Salvia bowleyana HOM05D005553 ORTHO05D006866 3.5e-135 486.1 433 58.4
AUR62016558 Chenopodium quinoa HOM05D005553 ORTHO05D006866 1.7e-134 483.8 567 50.1
DCAR_000631 Daucus carota HOM05D005553 ORTHO05D006866 3.7e-129 466.1 566 49.8
Potri.002G244801 Populus trichocarpa HOM05D005553 ORTHO05D006866 2.7e-127 459.9 338 69.5
SHI14561 Sapria himalayana HOM05D005553 ORTHO05D006866 8.0e-124 448.4 541 48.2
arahy.Tifrunner.gnm1.ann1.ET68I8 Arachis hypogaea HOM05D005553 ORTHO05D006866 4.3e-109 399.4 357 58.0
arahy.Tifrunner.gnm1.ann1.SPK719 Arachis hypogaea HOM05D005553 ORTHO05D006866 9.2e-104 381.7 383 53.5
Pp3c13_19160 Physcomitrium patens HOM05D005553 ORTHO05D006866 4.0e-99 366.3 621 39.3
arahy.Tifrunner.gnm1.ann1.YI9T1V Arachis hypogaea HOM05D005553 ORTHO05D006866 2.9e-97 360.1 397 50.9
QL02p097148 Quercus lobata HOM05D005553 ORTHO05D006866 4.6e-95 352.8 271 67.5
QL05p022419 Quercus lobata HOM05D005553 ORTHO05D006866 3.1e-91 340.1 210 78.1
Mapoly0045s0104 Marchantia polymorpha HOM05D005553 ORTHO05D006866 2.0e-90 337.4 605 34.7
SMO353G0187 Selaginella moellendorffii HOM05D005553 ORTHO05D006866 2.6e-90 337.0 569 36.9
unitig_0.g372 Utricularia gibba HOM05D005553 ORTHO05D006866 1.2e-87 328.2 468 43.8
AagrBONN_evm.TU.Sc2ySwM_117.1632 Anthoceros agrestis HOM05D005553 ORTHO05D006866 5.1e-86 322.8 559 38.8
arahy.Tifrunner.gnm1.ann1.DF0SS3 Arachis hypogaea HOM05D005553 ORTHO05D006866 6.0e-71 272.7 351 46.4
HPP92_001410 Vanilla planifolia HOM05D005553 ORTHO05D006866 3.1e-59 233.8 218 54.6
CBR_g46590 Chara braunii HOM05D005553 ORTHO05D006866 5.8e-50 203.0 446 31.2
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 1.6e-44 184.9 222 48.2
EL10Ac7g17877 Beta vulgaris HOM05D005553 ORTHO05D006866 9.7e-37 159.1 149 58.4
SEGI_35984 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 5.5e-32 143.3 262 35.1
arahy.Tifrunner.gnm1.ann1.3A36EA Arachis hypogaea HOM05D005553 ORTHO05D006866 3.6e-31 140.6 136 58.8
arahy.Tifrunner.gnm1.ann1.UUY44J Arachis hypogaea HOM05D005553 ORTHO05D006866 7.4e-29 132.9 225 37.8
unitig_0.g371 Utricularia gibba HOM05D005553 ORTHO05D006866 5.0e-25 120.2 74 78.4
TAR365G0595 Trochodendron aralioides HOM05D005553 ORTHO05D006866 3.2e-16 90.9 90 57.8
A05p41020 Brassica napus HOM05D005553 ORTHO05D006866 6.1e-15 86.7 179 38.0
SEGI_34191 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 5.7e-13 80.1 130 37.7
TPR.G39542 Trifolium pratense HOM05D005553 ORTHO05D006866 4.8e-12 77.0 38 84.2
VMungo1383G0327 Vigna mungo HOM05D005553 ORTHO05D006866 5.9e-10 70.1 53 58.5
Cre01.g013400 Chlamydomonas reinhardtii HOM05D005553 ORTHO05D006866 1.4e-06 58.9 191 24.6


User provided reference genes

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