Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24830 Corylus avellana HOM05D007989 ORTHO05D010087 4.4e-107 391.3 202 100.0
Haze_24825 Corylus avellana HOM05D007989 ORTHO05D010087 1.2e-104 383.3 197 100.0
Cfa002588 Carpinus fangiana HOM05D007989 ORTHO05D010087 1.0e-92 343.6 198 93.9
QL06p047951 Quercus lobata HOM05D007989 ORTHO05D010087 6.0e-64 248.1 219 67.1
CiPaw.04G104100 Carya illinoinensis HOM05D007989 ORTHO05D010087 2.3e-63 246.1 223 65.0
CiPaw.03G146300 Carya illinoinensis HOM05D007989 ORTHO05D010087 3.6e-61 238.8 222 67.6
Dinv08871 Davidia involucrata HOM05D007989 ORTHO05D010087 2.4e-57 226.1 201 62.2
Prupe.6G193900 Prunus persica HOM05D007989 ORTHO05D010087 4.7e-53 211.8 213 57.7
MD15G1317900 Malus domestica HOM05D007989 ORTHO05D010087 1.7e-50 203.4 212 59.0
Potri.007G097400 Populus trichocarpa HOM05D007989 ORTHO05D010087 4.9e-50 201.8 214 56.5
Thecc.01G095100 Theobroma cacao HOM05D007989 ORTHO05D010087 1.1e-49 200.7 219 55.3
Potri.005G071400 Populus trichocarpa HOM05D007989 ORTHO05D010087 1.2e-48 197.2 214 56.5
Manes.13G097300 Manihot esculenta HOM05D007989 ORTHO05D010087 2.1e-45 186.4 199 57.8
FAN19G2348 Fragaria x ananassa HOM05D007989 ORTHO05D010087 3.6e-45 185.7 210 55.7
MD01G1036700 Malus domestica HOM05D007989 ORTHO05D010087 6.2e-45 184.9 207 54.6
FvH4_1g20210 Fragaria vesca HOM05D007989 ORTHO05D010087 1.4e-44 183.7 205 56.6
TWI53G0073 Tripterygium wilfordii HOM05D007989 ORTHO05D010087 4.0e-44 182.2 202 53.0
RcHm_v2.0_Chr2g0112271 Rosa chinensis HOM05D007989 ORTHO05D010087 1.2e-43 180.6 203 56.7
Duzib147G0239 Durio zibethinus HOM05D007989 ORTHO05D010087 2.6e-43 179.5 224 50.4
FAN23G0861 Fragaria x ananassa HOM05D007989 ORTHO05D010087 2.6e-43 179.5 205 55.1
FAN26G0087 Fragaria x ananassa HOM05D007989 ORTHO05D010087 4.4e-43 178.7 203 55.2
Sabra07G0080700 Salix brachista HOM05D007989 ORTHO05D010087 5.8e-43 178.3 202 53.0
Atru.chr3.1338 Acer truncatum HOM05D007989 ORTHO05D010087 2.9e-42 176.0 208 52.4
COL.COLO4_27300 Corchorus olitorius HOM05D007989 ORTHO05D010087 8.4e-42 174.5 191 52.9
Sabra05G0058400 Salix brachista HOM05D007989 ORTHO05D010087 8.4e-42 174.5 216 52.8
FAN28G0040 Fragaria x ananassa HOM05D007989 ORTHO05D010087 4.6e-40 168.7 198 54.0
Ciclev10026467m.g Citrus clementina HOM05D007989 ORTHO05D010087 6.2e-37 158.3 184 52.2
Cpa.g.sc55.66 Carica papaya HOM05D007989 ORTHO05D010087 8.1e-37 157.9 207 50.7
Nn1g05466 Nelumbo nucifera HOM05D007989 ORTHO05D010087 4.0e-36 155.6 202 49.5
AUR62027199 Chenopodium quinoa HOM05D007989 ORTHO05D010087 5.3e-36 155.2 197 47.2
Gorai.003G041700 Gossypium raimondii HOM05D007989 ORTHO05D010087 1.7e-34 150.2 217 45.6
Nitab4.5_0005930g0030 Nicotiana tabacum HOM05D007989 ORTHO05D010087 2.9e-34 149.4 197 47.7
CANSAT01G0464 Cannabis sativa HOM05D007989 ORTHO05D010087 3.8e-34 149.1 203 47.3
Gohir.D03G040900 Gossypium hirsutum HOM05D007989 ORTHO05D010087 4.9e-34 148.7 217 45.6
EL10Ac6g14814 Beta vulgaris HOM05D007989 ORTHO05D010087 1.4e-33 147.1 213 48.4
Gohir.A02G130000 Gossypium hirsutum HOM05D007989 ORTHO05D010087 3.2e-33 146.0 209 45.5
TAR628G0250 Trochodendron aralioides HOM05D007989 ORTHO05D010087 7.1e-33 144.8 181 49.2
Rhsim10G0168900 Rhododendron simsii HOM05D007989 ORTHO05D010087 3.5e-32 142.5 141 57.4
PSO541G3922 Papaver somniferum HOM05D007989 ORTHO05D010087 4.6e-32 142.1 186 45.7
Nitab4.5_0000241g0120 Nicotiana tabacum HOM05D007989 ORTHO05D010087 7.8e-32 141.4 197 44.7
PSO675G2967 Papaver somniferum HOM05D007989 ORTHO05D010087 2.3e-31 139.8 191 46.1
Phvul.001G254200 Phaseolus vulgaris HOM05D007989 ORTHO05D010087 6.6e-31 138.3 189 48.1
Lj6g0026253 Lotus japonicus HOM05D007989 ORTHO05D010087 4.3e-30 135.6 202 46.5
Medtr3g086760 Medicago truncatula HOM05D007989 ORTHO05D010087 7.3e-30 134.8 209 46.9
TPR.G30536 Trifolium pratense HOM05D007989 ORTHO05D010087 1.3e-29 134.0 187 50.8
arahy.Tifrunner.gnm1.ann1.92LXSJ Arachis hypogaea HOM05D007989 ORTHO05D010087 1.6e-29 133.7 183 51.9
Glyma.18G014700 Glycine max HOM05D007989 ORTHO05D010087 2.1e-29 133.3 177 49.2
vmacro12990 Vaccinium macrocarpon HOM05D007989 ORTHO05D010087 3.6e-29 132.5 173 49.7
VMungo1383G0535 Vigna mungo HOM05D007989 ORTHO05D010087 3.6e-29 132.5 199 45.2
Hma1.2p1_0019F.1_g013880 Hydrangea macrophylla HOM05D007989 ORTHO05D010087 6.2e-29 131.7 219 46.1
Aqoxy6G00707 Aquilegia oxysepala HOM05D007989 ORTHO05D010087 3.1e-28 129.4 197 43.7
Actinidia06535 Actinidia chinensis HOM05D007989 ORTHO05D010087 4.0e-28 129.0 162 49.4
MBI06_g03317_MAGBIO Magnolia biondii HOM05D007989 ORTHO05D010087 4.0e-28 129.0 209 43.1
arahy.Tifrunner.gnm1.ann1.FU6RJX Arachis hypogaea HOM05D007989 ORTHO05D010087 9.0e-28 127.9 173 52.0
Psat1g083960 Pisum sativum HOM05D007989 ORTHO05D010087 2.0e-27 126.7 176 50.6
Ca_30637_v3 Cicer arietinum L. HOM05D007989 ORTHO05D010087 4.5e-27 125.6 188 48.4
CAN.G905.6 Capsicum annuum HOM05D007989 ORTHO05D010087 2.9e-26 122.9 204 43.1
Glyma.11G242400 Glycine max HOM05D007989 ORTHO05D010087 2.1e-24 116.7 181 45.9
Sopen11g005100 Solanum pennellii HOM05D007989 ORTHO05D010087 1.5e-22 110.5 203 40.4
PGSC0003DMG401016146 Solanum tuberosum HOM05D007989 ORTHO05D010087 4.3e-22 109.0 206 39.8
Solyc11g010320.1 Solanum lycopersicum HOM05D007989 ORTHO05D010087 9.6e-22 107.8 200 40.0
Lalb_Chr08g0230941 Lupinus albus HOM05D007989 ORTHO05D010087 1.6e-21 107.1 125 52.8
CsaV3_4G009020 Cucumis sativus L. HOM05D007989 ORTHO05D010087 2.1e-21 106.7 187 41.2
MELO3C018999.2 Cucumis melo HOM05D007989 ORTHO05D010087 3.7e-21 105.9 190 40.0
Oeu002158.1 Olea europaea HOM05D007989 ORTHO05D010087 4.8e-21 105.5 119 50.4
Migut.H02322 Erythranthe guttata HOM05D007989 ORTHO05D010087 1.1e-20 104.4 210 37.6
PGR004G2401 Punica granatum HOM05D007989 ORTHO05D010087 4.9e-18 95.5 162 38.9
ClCG10G008400 Citrullus lanatus HOM05D007989 ORTHO05D010087 6.5e-18 95.1 184 39.1
Sc16g0000320 Simmondsia chinensis HOM05D007989 ORTHO05D010087 7.9e-16 88.2 137 43.1
Ca_16505_v3 Cicer arietinum L. HOM05D007989 ORTHO05D010087 1.5e-14 84.0 137 47.4
HPP92_002319 Vanilla planifolia HOM05D007989 ORTHO05D010087 9.6e-14 81.3 172 30.8
Sed0027218 Sechium edule HOM05D007989 ORTHO05D010087 2.1e-13 80.1 106 50.0
Zm00001eb033460 Zea mays HOM05D007989 ORTHO05D010087 1.3e-10 70.9 157 36.3
Aa31LG1G10610 Aethionema arabicum HOM05D002476 ORTHO05D002652 2.2e-10 70.1 167 37.1
Thhalv10008123m.g Eutrema salsugineum HOM05D002476 ORTHO05D002652 2.9e-10 69.7 126 38.1
Sp1g01040 Schrenkiella parvula HOM05D002476 ORTHO05D002652 3.8e-10 69.3 186 32.3
arahy.Tifrunner.gnm1.ann1.2ZXA1E Arachis hypogaea HOM05D002476 ORTHO05D002652 5.0e-10 68.9 185 32.4
A10p00670 Brassica napus HOM05D002476 ORTHO05D002652 6.5e-10 68.6 189 32.3
THA.LOC104825884 Tarenaya hassleriana HOM05D002476 ORTHO05D002652 6.5e-10 68.6 202 30.7
Os08g0483100 Oryza sativa ssp. japonica HOM05D007989 ORTHO05D010087 8.4e-10 68.2 165 33.9
arahy.Tifrunner.gnm1.ann1.9N50L0 Arachis hypogaea HOM05D002476 ORTHO05D002652 1.9e-09 67.0 181 33.1
C05p00710 Brassica napus HOM05D002476 ORTHO05D002652 4.2e-09 65.9 184 30.4
AT1G01240 Arabidopsis thaliana HOM05D002476 ORTHO05D002652 5.5e-09 65.5 185 32.4
Carub.0004s2927 Capsella rubella HOM05D002476 ORTHO05D002652 7.1e-09 65.1 119 36.1
Ca_12783_v3 Cicer arietinum L. HOM05D002476 ORTHO05D002652 1.2e-08 64.3 143 32.9
Ca_12787_v3 Cicer arietinum L. HOM05D002476 ORTHO05D002652 1.2e-08 64.3 143 32.9
Ca_29819_v3 Cicer arietinum L. HOM05D002476 ORTHO05D002652 1.2e-08 64.3 143 32.9
Aa31LG1G27930 Aethionema arabicum HOM05D002476 ORTHO05D002652 1.6e-08 63.9 120 36.7
Thhalv10001490m.g Eutrema salsugineum HOM05D002476 ORTHO05D002652 2.7e-08 63.2 131 35.9
AT2G46550 Arabidopsis thaliana HOM05D002476 ORTHO05D002652 3.5e-08 62.8 124 37.9
A09p69030 Brassica napus HOM05D002476 ORTHO05D002652 3.5e-08 62.8 191 30.4
BraA09t42240Z Brassica rapa HOM05D002476 ORTHO05D002652 4.6e-08 62.4 191 29.8
Sp4g28600 Schrenkiella parvula HOM05D002476 ORTHO05D002652 4.6e-08 62.4 131 37.4
AL1G11220 Arabidopsis lyrata HOM05D002476 ORTHO05D002652 6.1e-08 62.0 186 32.8
CiPaw.02G041500 Carya illinoinensis HOM05D002476 ORTHO05D002652 6.1e-08 62.0 162 31.5
MD07G1152400 Malus domestica HOM05D002476 ORTHO05D002652 6.1e-08 62.0 152 32.2
Carub.0001s0097 Capsella rubella HOM05D002476 ORTHO05D002652 7.9e-08 61.6 193 31.1
Cpa.g.sc96.42 Carica papaya HOM05D002476 ORTHO05D002652 7.9e-08 61.6 160 30.0
CDE10G0158 Ceratophyllum demersum HOM05D002476 ORTHO05D002652 7.9e-08 61.6 174 28.2
Lsat_1_v5_gn_7_880 Lactuca sativa HOM05D002476 ORTHO05D002652 7.9e-08 61.6 190 32.6
BraA10t42344Z Brassica rapa HOM05D002476 ORTHO05D002652 1.0e-07 61.2 187 31.0
Duzib138G1935 Durio zibethinus HOM05D002476 ORTHO05D002652 1.3e-07 60.8 179 30.7
BolC8t52874H Brassica oleracea HOM05D002476 ORTHO05D002652 1.8e-07 60.5 192 30.2
A05p01220 Brassica napus HOM05D002476 ORTHO05D002652 3.0e-07 59.7 119 38.7
MELO3C005891.2 Cucumis melo HOM05D002476 ORTHO05D002652 3.0e-07 59.7 80 46.2
Migut.B01888 Erythranthe guttata HOM05D002476 ORTHO05D002652 3.0e-07 59.7 187 30.5
Manes.01G244700 Manihot esculenta HOM05D002476 ORTHO05D002652 3.0e-07 59.7 152 30.9
SGA_v2.0_scaffold22G09959 Striga asiatica HOM05D002476 ORTHO05D002652 3.0e-07 59.7 139 30.2
BraA05t19123Z Brassica rapa HOM05D002476 ORTHO05D002652 3.9e-07 59.3 119 38.7
MD01G1083700 Malus domestica HOM05D002476 ORTHO05D002652 3.9e-07 59.3 227 28.6
SEGI_39687 Sequoiadendron giganteum HOM05D002476 ORTHO05D002652 3.9e-07 59.3 62 53.2
Gohir.D07G142033 Gossypium hirsutum HOM05D002476 ORTHO05D002652 5.1e-07 58.9 221 27.6
Lj9A600T51 Lonicera japonica HOM05D002476 ORTHO05D002652 5.1e-07 58.9 63 47.6
PSO135G0353 Papaver somniferum HOM05D002476 ORTHO05D002652 5.1e-07 58.9 141 32.6
C04p01370 Brassica napus HOM05D002476 ORTHO05D002652 6.7e-07 58.5 120 37.5
BolC4t21790H Brassica oleracea HOM05D002476 ORTHO05D002652 6.7e-07 58.5 120 37.5
CARHR001220 Cardamine hirsuta HOM05D002476 ORTHO05D002652 6.7e-07 58.5 183 31.7
PSO063G3833 Papaver somniferum HOM05D002476 ORTHO05D002652 6.7e-07 58.5 71 47.9
PSO170G6198 Papaver somniferum HOM05D002476 ORTHO05D002652 6.7e-07 58.5 71 47.9
RcHm_v2.0_Chr1g0360101 Rosa chinensis HOM05D002476 ORTHO05D002652 6.7e-07 58.5 179 30.7
Solyc01g096100.2 Solanum lycopersicum HOM05D002476 ORTHO05D002652 6.7e-07 58.5 62 50.0
GSVIVG01027170001 Vitis vinifera HOM05D002476 ORTHO05D002652 6.7e-07 58.5 82 41.5
BcaC02g07017 Brassica carinata HOM05D002476 ORTHO05D002652 8.7e-07 58.2 162 31.5
CARHR141890 Cardamine hirsuta HOM05D002476 ORTHO05D002652 8.7e-07 58.2 119 34.5
Cc02_g39570 Coffea canephora HOM05D002476 ORTHO05D002652 8.7e-07 58.2 86 39.5
FAN10G1192 Fragaria x ananassa HOM05D002476 ORTHO05D002652 8.7e-07 58.2 179 28.5
Sopen01g039820 Solanum pennellii HOM05D002476 ORTHO05D002652 8.7e-07 58.2 62 50.0
PGSC0003DMG400000234 Solanum tuberosum HOM05D002476 ORTHO05D002652 8.7e-07 58.2 62 50.0
Ca_23521_v3 Cicer arietinum L. HOM05D002476 ORTHO05D002652 1.1e-06 57.8 174 28.7
ClCG01G000370 Citrullus lanatus HOM05D002476 ORTHO05D002652 1.1e-06 57.8 100 40.0
CsaV3_5G000450 Cucumis sativus L. HOM05D002476 ORTHO05D002652 1.1e-06 57.8 80 45.0
ECA234G4012 Erigeron canadensis HOM05D002476 ORTHO05D002652 1.1e-06 57.8 111 38.7
Lj1A1019T45 Lonicera japonica HOM05D002476 ORTHO05D002652 1.1e-06 57.8 141 31.2
Lj1A1021T48 Lonicera japonica HOM05D002476 ORTHO05D002652 1.1e-06 57.8 141 31.2
QL09p007993 Quercus lobata HOM05D002476 ORTHO05D002652 1.1e-06 57.8 174 31.0
Actinidia20251 Actinidia chinensis HOM05D002476 ORTHO05D002652 1.5e-06 57.4 62 48.4
Gorai.001G153700 Gossypium raimondii HOM05D002476 ORTHO05D002652 1.5e-06 57.4 220 27.3
AL4G45980 Arabidopsis lyrata HOM05D002476 ORTHO05D002652 1.9e-06 57.0 128 35.9
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 1.9e-06 57.0 120 36.7
A04p34460 Brassica napus HOM05D002476 ORTHO05D002652 1.9e-06 57.0 126 34.1
BraA04t18904Z Brassica rapa HOM05D002476 ORTHO05D002652 1.9e-06 57.0 126 34.1
CDE04G0480 Ceratophyllum demersum HOM05D002476 ORTHO05D002652 1.9e-06 57.0 79 41.8
SGA_v2.0_scaffold43G16346 Striga asiatica HOM05D002476 ORTHO05D002652 1.9e-06 57.0 59 49.2
THA.LOC104817374 Tarenaya hassleriana HOM05D002476 ORTHO05D002652 1.9e-06 57.0 61 50.8
BcaC02g07040 Brassica carinata HOM05D002476 ORTHO05D002652 2.5e-06 56.6 116 35.3
BcaNung06659 Brassica carinata HOM05D002476 ORTHO05D002652 2.5e-06 56.6 116 35.3
CiPaw.01G077700 Carya illinoinensis HOM05D002476 ORTHO05D002652 2.5e-06 56.6 163 28.2
FAN10G2775 Fragaria x ananassa HOM05D002476 ORTHO05D002652 2.5e-06 56.6 179 27.9
Nn1g00295 Nelumbo nucifera HOM05D002476 ORTHO05D002652 2.5e-06 56.6 60 48.3
PSO384G4994 Papaver somniferum HOM05D002476 ORTHO05D002652 2.5e-06 56.6 141 34.8
Peaxi162Scf00345g00121 Petunia axillaris HOM05D002476 ORTHO05D002652 2.5e-06 56.6 62 48.4
THA.LOC104802082 Tarenaya hassleriana HOM05D002476 ORTHO05D002652 2.5e-06 56.6 214 28.0
CANSAT56G3996 Cannabis sativa HOM05D002476 ORTHO05D002652 3.3e-06 56.2 159 28.3
Actinidia06141 Actinidia chinensis HOM05D002476 ORTHO05D002652 4.3e-06 55.8 94 41.5
BcaC02g12672 Brassica carinata HOM05D002476 ORTHO05D002652 4.3e-06 55.8 121 33.9
CSS0042345 Camellia sinensis var. sinensis HOM05D002476 ORTHO05D002652 4.3e-06 55.8 62 48.4
Migut.N01533 Erythranthe guttata HOM05D002476 ORTHO05D002652 4.3e-06 55.8 144 27.8
Gohir.A11G098000 Gossypium hirsutum HOM05D002476 ORTHO05D002652 4.3e-06 55.8 168 29.2
Hma1.2p1_1587F.1_g292240 Hydrangea macrophylla HOM05D002476 ORTHO05D002652 4.3e-06 55.8 81 40.7
Lsat_1_v5_gn_8_5381 Lactuca sativa HOM05D002476 ORTHO05D002652 4.3e-06 55.8 113 36.3
TPR.G18768 Trifolium pratense HOM05D002476 ORTHO05D002652 4.3e-06 55.8 150 32.7
Gohir.A07G136700 Gossypium hirsutum HOM05D002476 ORTHO05D002652 5.7e-06 55.5 227 30.8
Lalb_Chr18g0044531 Lupinus albus HOM05D002476 ORTHO05D002652 5.7e-06 55.5 65 43.1
MBI07_g24772_MAGBIO Magnolia biondii HOM05D002476 ORTHO05D002652 5.7e-06 55.5 77 42.9
Manes.05G021400 Manihot esculenta HOM05D002476 ORTHO05D002652 5.7e-06 55.5 68 47.1
CAN.G1415.19 Capsicum annuum HOM05D002476 ORTHO05D002652 7.4e-06 55.1 62 48.4
Medtr1g007840 Medicago truncatula HOM05D002476 ORTHO05D002652 7.4e-06 55.1 153 31.4
Oeu004960.1 Olea europaea HOM05D002476 ORTHO05D002652 7.4e-06 55.1 88 40.9
Potri.014G100300 Populus trichocarpa HOM05D002476 ORTHO05D002652 7.4e-06 55.1 105 37.1
SGA_v2.0_scaffold232G43547 Striga asiatica HOM05D002476 ORTHO05D002652 7.4e-06 55.1 97 38.1
ATR0758G001 Amborella trichopoda HOM05D002476 ORTHO05D010087 9.7e-06 54.7 141 32.6
COL.COLO4_06227 Corchorus olitorius HOM05D002476 ORTHO05D002652 9.7e-06 54.7 61 47.5
Gorai.007G109800 Gossypium raimondii HOM05D002476 ORTHO05D002652 9.7e-06 54.7 86 39.5
Psat4g214720 Pisum sativum HOM05D002476 ORTHO05D002652 9.7e-06 54.7 166 32.5
Psat6g035000 Pisum sativum HOM05D002476 ORTHO05D002652 9.7e-06 54.7 91 38.5


User provided reference genes

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