Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24789 Corylus avellana HOM05D004163 ORTHO05D004882 8.6e-70 266.9 140 100.0
QL09p054666 Quercus lobata HOM05D004163 ORTHO05D004882 5.2e-43 177.9 150 71.3
CiPaw.03G150300 Carya illinoinensis HOM05D004163 ORTHO05D004882 4.9e-41 171.4 154 65.6
CiPaw.04G105700 Carya illinoinensis HOM05D004163 ORTHO05D004882 7.8e-39 164.1 151 64.2
Cpa.g.sc8.162 Carica papaya HOM05D004163 ORTHO05D004882 9.6e-37 157.1 151 60.9
COL.COLO4_08179 Corchorus olitorius HOM05D004163 ORTHO05D004882 8.1e-36 154.1 158 59.5
Atru.chr5.2002 Acer truncatum HOM05D004163 ORTHO05D004882 3.1e-35 152.1 169 56.2
Gohir.A11G137300 Gossypium hirsutum HOM05D004163 ORTHO05D004882 4.0e-35 151.8 164 57.9
Duzib133G0118 Durio zibethinus HOM05D004163 ORTHO05D004882 9.0e-35 150.6 162 57.4
TWI18G0775 Tripterygium wilfordii HOM05D004163 ORTHO05D004882 2.6e-34 149.1 163 58.3
TWI36G1488 Tripterygium wilfordii HOM05D004163 ORTHO05D004882 2.6e-34 149.1 164 56.7
Gohir.D11G143700 Gossypium hirsutum HOM05D004163 ORTHO05D004882 3.4e-34 148.7 164 57.3
Actinidia30080 Actinidia chinensis HOM05D004163 ORTHO05D004882 1.7e-33 146.4 162 58.6
Prupe.8G203600 Prunus persica HOM05D004163 ORTHO05D004882 4.9e-33 144.8 148 61.5
Actinidia37588 Actinidia chinensis HOM05D004163 ORTHO05D004882 8.4e-33 144.1 167 58.1
Dinv19207 Davidia involucrata HOM05D004163 ORTHO05D004882 8.4e-33 144.1 161 56.5
HanXRQChr15g0468291 Helianthus annuus HOM05D004163 ORTHO05D004882 1.1e-32 143.7 144 58.3
Duzib138G0078 Durio zibethinus HOM05D004163 ORTHO05D004882 1.4e-32 143.3 164 56.7
Potri.002G241700 Populus trichocarpa HOM05D004163 ORTHO05D004882 1.4e-32 143.3 160 56.2
Thecc.01G226700 Theobroma cacao HOM05D004163 ORTHO05D004882 1.4e-32 143.3 150 59.3
HanXRQChr10g0279771 Helianthus annuus HOM05D004163 ORTHO05D004882 1.9e-32 142.9 144 57.6
TAR633G1583 Trochodendron aralioides HOM05D004163 ORTHO05D004882 1.9e-32 142.9 174 53.4
Gohir.A08G194200 Gossypium hirsutum HOM05D004163 ORTHO05D004882 2.4e-32 142.5 164 54.3
Gorai.004G225400 Gossypium raimondii HOM05D004163 ORTHO05D004882 2.4e-32 142.5 164 54.3
Sabra02G0184100 Salix brachista HOM05D004163 ORTHO05D004882 3.2e-32 142.1 168 53.0
TAR362G1211 Trochodendron aralioides HOM05D004163 ORTHO05D004882 3.2e-32 142.1 180 53.9
GSVIVG01028648001 Vitis vinifera HOM05D004163 ORTHO05D004882 9.3e-32 140.6 147 58.5
FAN15G0391 Fragaria x ananassa HOM05D004163 ORTHO05D004882 1.2e-31 140.2 146 59.6
VMungo1383G2575 Vigna mungo HOM05D004163 ORTHO05D004882 1.2e-31 140.2 140 57.1
FvH4_4g33290 Fragaria vesca HOM05D004163 ORTHO05D004882 1.6e-31 139.8 145 60.0
Hma1.2p1_0970F.1_g242660 Hydrangea macrophylla HOM05D004163 ORTHO05D004882 1.6e-31 139.8 144 58.3
arahy.Tifrunner.gnm1.ann1.PP5Q2Q Arachis hypogaea HOM05D004163 ORTHO05D004882 2.1e-31 139.4 152 56.6
Gohir.D08G212000 Gossypium hirsutum HOM05D004163 ORTHO05D004882 2.1e-31 139.4 159 53.5
arahy.Tifrunner.gnm1.ann1.IH4GAK Arachis hypogaea HOM05D004163 ORTHO05D004882 2.7e-31 139.0 152 57.2
Cc01_g17110 Coffea canephora HOM05D004163 ORTHO05D004882 2.7e-31 139.0 153 56.2
Sc24g0003580 Simmondsia chinensis HOM05D004163 ORTHO05D004882 4.6e-31 138.3 150 57.3
Eucgr.K02178 Eucalyptus grandis HOM05D004163 ORTHO05D004882 6.0e-31 137.9 152 56.6
PGSC0003DMG400017659 Solanum tuberosum HOM05D004163 ORTHO05D004882 6.0e-31 137.9 148 56.1
Sopen09g024070 Solanum pennellii HOM05D004163 ORTHO05D004882 7.9e-31 137.5 152 55.9
EL10Ac7g17826 Beta vulgaris HOM05D004163 ORTHO05D004882 1.8e-30 136.3 157 53.5
Ciclev10021450m.g Citrus clementina HOM05D004163 ORTHO05D004882 1.8e-30 136.3 169 53.3
ECA247G0816 Erigeron canadensis HOM05D004163 ORTHO05D004882 2.3e-30 136.0 143 55.2
Migut.D00532 Erythranthe guttata HOM05D004163 ORTHO05D004882 2.3e-30 136.0 143 59.4
Eucgr.K02173 Eucalyptus grandis HOM05D004163 ORTHO05D004882 2.3e-30 136.0 152 55.9
AUR62008905 Chenopodium quinoa HOM05D004163 ORTHO05D004882 3.0e-30 135.6 161 54.7
ClCG09G009070 Citrullus lanatus HOM05D004163 ORTHO05D004882 5.1e-30 134.8 142 56.3
RcHm_v2.0_Chr6g0284951 Rosa chinensis HOM05D004163 ORTHO05D004882 5.1e-30 134.8 147 59.2
Lalb_Chr01g0022371 Lupinus albus HOM05D004163 ORTHO05D004882 6.7e-30 134.4 152 56.6
Nn1g07844 Nelumbo nucifera HOM05D004163 ORTHO05D004882 6.7e-30 134.4 170 50.6
Nitab4.5_0006192g0030 Nicotiana tabacum HOM05D004163 ORTHO05D004882 6.7e-30 134.4 141 58.2
vmacro02754 Vaccinium macrocarpon HOM05D004163 ORTHO05D004882 8.7e-30 134.0 159 55.3
CAN.G154.3 Capsicum annuum HOM05D004163 ORTHO05D004882 1.1e-29 133.7 149 55.0
FAN27G1937 Fragaria x ananassa HOM05D004163 ORTHO05D004882 1.1e-29 133.7 143 58.0
MD05G1176500 Malus domestica HOM05D004163 ORTHO05D004882 1.5e-29 133.3 148 56.1
THA.LOC104822505 Tarenaya hassleriana HOM05D004163 ORTHO05D004882 1.9e-29 132.9 148 52.0
Hund05534 Selenicereus undatus HOM05D004163 ORTHO05D004882 3.3e-29 132.1 161 54.7
Hund05538 Selenicereus undatus HOM05D004163 ORTHO05D004882 3.3e-29 132.1 161 54.7
Psat3g145080 Pisum sativum HOM05D004163 ORTHO05D004882 4.3e-29 131.7 152 55.9
SGA_v2.0_scaffold1G00744 Striga asiatica HOM05D004163 ORTHO05D004882 4.3e-29 131.7 142 59.9
Lj1g0012524 Lotus japonicus HOM05D004163 ORTHO05D004882 5.6e-29 131.3 150 54.7
Manes.13G045400 Manihot esculenta HOM05D004163 ORTHO05D004882 5.6e-29 131.3 163 52.8
Phvul.008G125200 Phaseolus vulgaris HOM05D004163 ORTHO05D004882 5.6e-29 131.3 140 57.1
MELO3C021008.2 Cucumis melo HOM05D004163 ORTHO05D004882 7.4e-29 131.0 138 55.1
Rhsim13G0044700 Rhododendron simsii HOM05D004163 ORTHO05D004882 7.4e-29 131.0 156 54.5
Aqoxy2G03890 Aquilegia oxysepala HOM05D004163 ORTHO05D004882 1.3e-28 130.2 155 53.5
Medtr7g058510 Medicago truncatula HOM05D004163 ORTHO05D004882 1.3e-28 130.2 154 55.2
Nitab4.5_0000045g0110 Nicotiana tabacum HOM05D004163 ORTHO05D004882 1.6e-28 129.8 141 56.7
Solyc09g061310.3 Solanum lycopersicum HOM05D004163 ORTHO05D004882 2.1e-28 129.4 152 53.9
MD10G1165200 Malus domestica HOM05D004163 ORTHO05D004882 2.8e-28 129.0 150 54.7
Carub.0003s0660 Capsella rubella HOM05D004163 ORTHO05D004882 4.8e-28 128.3 138 53.6
Lj2A1132G68 Lonicera japonica HOM05D004163 ORTHO05D004882 4.8e-28 128.3 146 56.8
Manes.12G047002 Manihot esculenta HOM05D004163 ORTHO05D004882 4.8e-28 128.3 163 52.1
Gorai.007G153900 Gossypium raimondii HOM05D004163 ORTHO05D004882 8.1e-28 127.5 169 50.3
CsaV3_7G025890 Cucumis sativus L. HOM05D004163 ORTHO05D004882 1.8e-27 126.3 139 52.5
Glyma.18G170900 Glycine max HOM05D004163 ORTHO05D004882 2.4e-27 125.9 150 54.0
Lsat_1_v5_gn_9_12141 Lactuca sativa HOM05D004163 ORTHO05D004882 2.4e-27 125.9 141 57.4
CSS0045261 Camellia sinensis var. sinensis HOM05D004163 ORTHO05D004882 3.1e-27 125.6 154 53.9
vmacro14756 Vaccinium macrocarpon HOM05D004163 ORTHO05D004882 3.1e-27 125.6 149 52.3
Lalb_Chr03g0041791 Lupinus albus HOM05D004163 ORTHO05D004882 4.0e-27 125.2 141 52.5
CDE02G0060 Ceratophyllum demersum HOM05D004163 ORTHO05D004882 5.3e-27 124.8 154 51.9
Lsat_1_v5_gn_5_180180 Lactuca sativa HOM05D004163 ORTHO05D004882 5.3e-27 124.8 146 54.8
PGR044G0385 Punica granatum HOM05D004163 ORTHO05D004882 5.3e-27 124.8 153 50.3
MSTRG.21422 Avicennia marina HOM05D004163 ORTHO05D004882 9.0e-27 124.0 153 52.3
CSS0028699 Camellia sinensis var. sinensis HOM05D004163 ORTHO05D004882 9.0e-27 124.0 154 53.2
Glyma.08G354700 Glycine max HOM05D004163 ORTHO05D004882 1.2e-26 123.6 151 52.3
MBI15_g26747_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 1.2e-26 123.6 175 48.6
MBI18_g31614_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 1.5e-26 123.2 168 50.0
MBI10_g18940_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 2.0e-26 122.9 172 48.8
Sed0004920 Sechium edule HOM05D004163 ORTHO05D004882 2.0e-26 122.9 139 54.0
Ca_07522_v3 Cicer arietinum L. HOM05D004163 ORTHO05D004882 2.6e-26 122.5 157 49.0
Aa31LG5G17650 Aethionema arabicum HOM05D004163 ORTHO05D004882 3.4e-26 122.1 136 54.4
Aa31sc164G40 Aethionema arabicum HOM05D004163 ORTHO05D004882 3.4e-26 122.1 140 51.4
AL3G18320 Arabidopsis lyrata HOM05D004163 ORTHO05D004882 5.8e-26 121.3 138 54.3
BcaB04g21311 Brassica carinata HOM05D004163 ORTHO05D004882 5.8e-26 121.3 142 50.0
CANSAT01G0846 Cannabis sativa HOM05D004163 ORTHO05D004882 5.8e-26 121.3 153 51.0
BcaB04g21309 Brassica carinata HOM05D004163 ORTHO05D004882 9.9e-26 120.6 140 50.7
A05p41110 Brassica napus HOM05D004163 ORTHO05D004882 1.3e-25 120.2 144 51.4
BraA05t22837Z Brassica rapa HOM05D001545 ORTHO05D001600 1.3e-25 120.2 144 51.4
TPR.G9029 Trifolium pratense HOM05D004163 ORTHO05D004882 1.3e-25 120.2 147 51.7
HPP92_008969 Vanilla planifolia HOM05D004163 ORTHO05D004882 1.7e-25 119.8 137 54.0
BcaC05g29756 Brassica carinata HOM05D004163 ORTHO05D004882 2.9e-25 119.0 146 52.1
AT3G07090 Arabidopsis thaliana HOM05D004163 ORTHO05D004882 3.8e-25 118.6 138 50.7
C05p60290 Brassica napus HOM05D001545 ORTHO05D001600 3.8e-25 118.6 144 52.8
BcaC05g29838 Brassica carinata HOM05D004163 ORTHO05D004882 1.4e-24 116.7 144 50.7
BolC5t34677H Brassica oleracea HOM05D001545 ORTHO05D001600 1.4e-24 116.7 144 50.7
Nn3g19955 Nelumbo nucifera HOM05D004163 ORTHO05D004882 1.9e-24 116.3 157 47.8
PSO339G2763 Papaver somniferum HOM05D004163 ORTHO05D004882 1.9e-24 116.3 144 52.1
PSO675G2819 Papaver somniferum HOM05D004163 ORTHO05D004882 1.9e-24 116.3 137 56.2
PSO832G2991 Papaver somniferum HOM05D004163 ORTHO05D004882 1.9e-24 116.3 144 52.1
unitig_22.g6322 Utricularia gibba HOM05D004163 ORTHO05D004882 1.9e-24 116.3 147 51.0
CARHR081680 Cardamine hirsuta HOM05D004163 ORTHO05D004882 3.2e-24 115.5 142 50.7
PSO339G4819 Papaver somniferum HOM05D004163 ORTHO05D004882 5.5e-24 114.8 144 51.4
DCAR_012637 Daucus carota HOM05D004163 ORTHO05D004882 9.3e-24 114.0 143 52.4
Thhalv10021308m.g Eutrema salsugineum HOM05D004163 ORTHO05D004882 9.3e-24 114.0 151 47.0
MSTRG.17551 Avicennia marina HOM05D004163 ORTHO05D004882 1.2e-23 113.6 156 50.0
BNapus_Darmor_BZH_scaffold_109p00240 Brassica napus HOM05D001545 ORTHO05D001600 2.1e-23 112.8 135 48.1
AUR62031805 Chenopodium quinoa HOM05D004163 ORTHO05D004882 3.5e-23 112.1 161 46.6
Peaxi162Scf00107g01625 Petunia axillaris HOM05D004163 ORTHO05D004882 4.6e-23 111.7 164 49.4
BraA01t04398Z Brassica rapa HOM05D004163 ORTHO05D004882 6.0e-23 111.3 135 47.4
Sp3g06030 Schrenkiella parvula HOM05D004163 ORTHO05D004882 1.3e-22 110.2 150 46.7
Sed0020546 Sechium edule HOM05D004163 ORTHO05D004882 1.8e-22 109.8 144 49.3
BcaC09g47939 Brassica carinata HOM05D004163 ORTHO05D004882 3.0e-22 109.0 135 45.2
BolC1t05569H Brassica oleracea HOM05D001545 ORTHO05D001600 3.0e-22 109.0 135 45.2
MBI16_g22910_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 3.0e-22 109.0 193 43.5
Zm00001eb258670 Zea mays HOM05D004163 ORTHO05D004882 3.9e-22 108.6 140 50.7
Os10g0472400 Oryza sativa ssp. japonica HOM05D004163 ORTHO05D004882 4.3e-21 105.1 160 45.0
Peaxi162Scf00107g01626 Petunia axillaris HOM05D004163 ORTHO05D004882 5.6e-21 104.8 130 56.2
AagrBONN_evm.TU.Sc2ySwM_117.3750 Anthoceros agrestis HOM05D004163 ORTHO05D004882 9.6e-21 104.0 159 44.7
ECA236G3105 Erigeron canadensis HOM05D004163 ORTHO05D004882 2.8e-20 102.4 130 50.0
DCAR_000532 Daucus carota HOM05D004163 ORTHO05D004882 8.1e-20 100.9 140 46.4
ATR0736G127 Amborella trichopoda HOM05D004163 ORTHO05D004882 2.4e-19 99.4 172 40.7
Os02g0814000 Oryza sativa ssp. japonica HOM05D004163 ORTHO05D004882 3.1e-19 99.0 140 47.9
HanXRQChr10g0287331 Helianthus annuus HOM05D004163 ORTHO05D004882 4.0e-19 98.6 130 45.4
MBI05_g08208_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 4.5e-18 95.1 168 46.4
MBI05_g47467_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 5.8e-18 94.7 171 43.3
Zm00001eb221910 Zea mays HOM05D004163 ORTHO05D004882 7.6e-18 94.4 158 44.3
C07p01630 Brassica napus HOM05D004163 ORTHO05D004882 1.0e-17 94.0 134 44.8
Hma1.2p1_0812F.1_g222380 Hydrangea macrophylla HOM05D004163 ORTHO05D004882 2.2e-17 92.8 118 50.8
BolC7t40606H Brassica oleracea HOM05D004163 ORTHO05D004882 4.9e-17 91.7 116 49.1
BcaC06g36633 Brassica carinata HOM05D004163 ORTHO05D004882 8.4e-17 90.9 131 45.8
Lsat_1_v5_gn_8_90020 Lactuca sativa HOM05D004163 ORTHO05D004882 1.1e-16 90.5 130 45.4
MBI05_g47552_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 1.2e-15 87.0 171 42.7
HanXRQChr04g0110741 Helianthus annuus HOM05D004163 ORTHO05D004882 2.7e-15 85.9 129 45.0
ClCG07G001940 Citrullus lanatus HOM05D004163 ORTHO05D004882 1.1e-13 80.5 167 38.3
SMO146G0295 Selaginella moellendorffii HOM05D004163 ORTHO05D004882 3.3e-13 79.0 146 38.4
MELO3C026664.2 Cucumis melo HOM05D004163 ORTHO05D004882 2.8e-12 75.9 166 37.3
Pp3c14_10250 Physcomitrium patens HOM05D004163 ORTHO05D004882 2.8e-12 75.9 191 33.0
CDE01G0537 Ceratophyllum demersum HOM05D004163 ORTHO05D004882 3.1e-11 72.4 109 44.0
CsaV3_3G029920 Cucumis sativus L. HOM05D004163 ORTHO05D004882 1.2e-10 70.5 166 37.3
Peaxi162Scf00517g00519 Petunia axillaris HOM05D004163 ORTHO05D004882 2.2e-09 66.2 136 39.7
Mapoly0051s0047 Marchantia polymorpha HOM05D004163 ORTHO05D004882 6.5e-09 64.7 166 34.9
SHI28738 Sapria himalayana HOM05D004163 ORTHO05D004882 2.5e-08 62.8 148 38.5
BcaC06g35635 Brassica carinata HOM05D004163 ORTHO05D004882 3.2e-08 62.4 123 36.6
Cpa.g.sc997.5 Carica papaya HOM05D004163 ORTHO05D004882 5.5e-08 61.6 172 33.7


User provided reference genes

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