Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24777 Corylus avellana HOM05D007853 ORTHO05D009873 9.0e-198 693.3 341 100.0
Cfa002555 Carpinus fangiana HOM05D007853 ORTHO05D009873 6.2e-130 468.0 287 82.9
CiPaw.04G106700 Carya illinoinensis HOM05D007853 ORTHO05D009873 1.9e-118 429.9 225 88.4
CiPaw.03G151300 Carya illinoinensis HOM05D007853 ORTHO05D009873 3.5e-117 425.6 228 86.8
Prupe.8G204900 Prunus persica HOM05D007853 ORTHO05D009873 2.8e-106 389.4 227 79.7
RcHm_v2.0_Chr6g0285141 Rosa chinensis HOM05D007853 ORTHO05D009873 7.6e-104 381.3 230 77.8
TAR636G2687 Trochodendron aralioides HOM05D007853 ORTHO05D009873 7.6e-104 381.3 218 78.9
Dinv04666 Davidia involucrata HOM05D007853 ORTHO05D009873 1.7e-103 380.2 224 77.7
FvH4_2g19330 Fragaria vesca HOM05D007853 ORTHO05D009873 1.9e-102 376.7 240 74.2
FAN24G3434 Fragaria x ananassa HOM05D007853 ORTHO05D009873 4.2e-102 375.6 238 73.9
QL09p044713 Quercus lobata HOM05D007853 ORTHO05D009873 4.2e-102 375.6 224 79.0
Thecc.01G228200 Theobroma cacao HOM05D007853 ORTHO05D009873 4.2e-102 375.6 284 67.3
FAN15G1839 Fragaria x ananassa HOM05D007853 ORTHO05D009873 9.3e-102 374.4 220 77.7
MD05G1178400 Malus domestica HOM05D007853 ORTHO05D009873 9.3e-102 374.4 258 72.5
Manes.12G041900 Manihot esculenta HOM05D007853 ORTHO05D009873 2.1e-101 373.2 219 77.2
Lj1C83T5 Lonicera japonica HOM05D007853 ORTHO05D009873 2.7e-101 372.9 219 77.2
Ciclev10020523m.g Citrus clementina HOM05D007853 ORTHO05D009873 3.5e-101 372.5 215 79.5
FAN27G0897 Fragaria x ananassa HOM05D007853 ORTHO05D009873 3.5e-101 372.5 227 76.7
Lalb_Chr03g0041891 Lupinus albus HOM05D007853 ORTHO05D009873 3.9e-100 369.0 214 79.0
Actinidia09494 Actinidia chinensis HOM05D007853 ORTHO05D009873 8.7e-100 367.9 219 78.5
MBI10_g16828_MAGBIO Magnolia biondii HOM05D007853 ORTHO05D009873 1.5e-99 367.1 214 77.1
Duzib133G0551 Durio zibethinus HOM05D007853 ORTHO05D009873 1.9e-99 366.7 219 77.6
Gohir.D11G142600 Gossypium hirsutum HOM05D007853 ORTHO05D009873 2.5e-99 366.3 210 79.5
Gorai.007G152900 Gossypium raimondii HOM05D007853 ORTHO05D009873 2.5e-99 366.3 210 79.5
Gohir.A11G136300 Gossypium hirsutum HOM05D007853 ORTHO05D009873 2.8e-98 362.8 211 79.1
vmacro14766 Vaccinium macrocarpon HOM05D007853 ORTHO05D009873 2.8e-98 362.8 215 76.7
Hma1.2p1_1061F.1_g253350 Hydrangea macrophylla HOM05D007853 ORTHO05D009873 4.8e-98 362.1 216 78.2
CSS0040524 Camellia sinensis var. sinensis HOM05D007853 ORTHO05D009873 4.5e-96 355.5 219 75.3
Lsat_1_v5_gn_5_179800 Lactuca sativa HOM05D007853 ORTHO05D009873 2.2e-95 353.2 216 75.0
Lj1g0009384 Lotus japonicus HOM05D007853 ORTHO05D009873 8.4e-95 351.3 220 74.5
TPR.G15291 Trifolium pratense HOM05D007853 ORTHO05D009873 6.0e-93 345.1 222 72.5
Ca_07539_v3 Cicer arietinum L. HOM05D007853 ORTHO05D009873 1.0e-92 344.4 228 71.9
VMungo1383G0232 Vigna mungo HOM05D007853 ORTHO05D009873 3.0e-92 342.8 216 72.2
Glyma.18G173200 Glycine max HOM05D007853 ORTHO05D009873 3.9e-92 342.4 220 72.7
Medtr0197s0070 Medicago truncatula HOM05D007853 ORTHO05D009873 6.7e-92 341.7 218 72.0
Medtr7g059040 Medicago truncatula HOM05D007853 ORTHO05D009873 6.7e-92 341.7 218 72.0
Phvul.008G123400 Phaseolus vulgaris HOM05D007853 ORTHO05D009873 1.5e-91 340.5 255 65.5
Psat3g143800 Pisum sativum HOM05D007853 ORTHO05D009873 3.3e-91 339.3 227 69.2
PGR044G1509 Punica granatum HOM05D007853 ORTHO05D009873 3.3e-91 339.3 266 65.0
PGSC0003DMG400020089 Solanum tuberosum HOM05D007853 ORTHO05D009873 1.8e-89 333.6 271 60.9
Glyma.08G356100 Glycine max HOM05D007853 ORTHO05D009873 6.9e-89 331.6 255 64.7
HanXRQChr01g0014671 Helianthus annuus HOM05D007853 ORTHO05D009873 3.4e-88 329.3 233 66.1
ClCG09G009130 Citrullus lanatus HOM05D007853 ORTHO05D009873 5.9e-88 328.6 284 59.9
Solyc06g083550.1 Solanum lycopersicum HOM05D007853 ORTHO05D009873 5.9e-88 328.6 271 60.1
CAN.G771.60 Capsicum annuum HOM05D007853 ORTHO05D009873 1.0e-87 327.8 271 58.3
Sopen06g034930 Solanum pennellii HOM05D007853 ORTHO05D009873 1.3e-87 327.4 271 59.8
Peaxi162Scf00517g00042 Petunia axillaris HOM05D007853 ORTHO05D009873 8.5e-87 324.7 216 68.1
THA.LOC104804604 Tarenaya hassleriana HOM05D007853 ORTHO05D009873 1.2e-85 320.9 219 67.1
Oeu015462.1 Olea europaea HOM05D007853 ORTHO05D009873 6.1e-85 318.5 213 70.4
ATR0787G102 Amborella trichopoda HOM05D007853 ORTHO05D009873 8.7e-84 314.7 214 68.2
DCAR_000536 Daucus carota HOM05D007853 ORTHO05D009873 1.5e-83 313.9 215 68.8
Aa31LG8G11920 Aethionema arabicum HOM05D007853 ORTHO05D009873 1.9e-83 313.5 221 65.2
Actinidia23732 Actinidia chinensis HOM05D007853 ORTHO05D009873 2.5e-83 313.2 192 78.1
CDE01G0405 Ceratophyllum demersum HOM05D007853 ORTHO05D009873 7.4e-83 311.6 216 65.7
TWI18G0437 Tripterygium wilfordii HOM05D007853 ORTHO05D009873 3.7e-82 309.3 273 60.8
SEGI_02257 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 4.8e-82 308.9 212 66.0
GSVIVG01028563001 Vitis vinifera HOM05D007853 ORTHO05D009873 7.7e-80 301.6 172 82.0
Sp3g22500 Schrenkiella parvula HOM05D007853 ORTHO05D009873 1.1e-78 297.7 221 64.3
Thhalv10002571m.g Eutrema salsugineum HOM05D007853 ORTHO05D009873 5.5e-78 295.4 221 62.4
AT3G24760 Arabidopsis thaliana HOM05D007853 ORTHO05D009873 3.6e-77 292.7 217 63.1
BcaB06g26693 Brassica carinata HOM05D007853 ORTHO05D009873 2.0e-75 287.0 287 55.4
BcaC06g35750 Brassica carinata HOM05D007853 ORTHO05D009873 9.7e-75 284.6 288 52.4
BolC7t41605H Brassica oleracea HOM05D007853 ORTHO05D009873 9.7e-75 284.6 288 52.4
CARHR101120 Cardamine hirsuta HOM05D007853 ORTHO05D009873 9.7e-75 284.6 254 56.3
C07p11280 Brassica napus HOM05D007853 ORTHO05D009873 2.2e-74 283.5 284 52.8
Carub.0003s2515 Capsella rubella HOM05D007853 ORTHO05D009873 4.8e-74 282.3 221 59.7
AL3G40490 Arabidopsis lyrata HOM05D007853 ORTHO05D009873 8.2e-74 281.6 216 60.6
A07p07510 Brassica napus HOM05D007853 ORTHO05D009873 1.0e-71 274.6 279 52.3
BraA07t28542Z Brassica rapa HOM05D007853 ORTHO05D009873 1.0e-71 274.6 279 52.3
Nn3g19919 Nelumbo nucifera HOM05D007853 ORTHO05D009873 1.4e-70 270.8 281 53.7
Nitab4.5_0006773g0030 Nicotiana tabacum HOM05D007853 ORTHO05D009873 4.0e-60 236.1 216 53.2
Atru.chr5.2009 Acer truncatum HOM05D007853 ORTHO05D009873 1.2e-56 224.6 132 78.0
Mapoly0119s0024 Marchantia polymorpha HOM05D007853 ORTHO05D009873 2.9e-39 166.8 206 40.8
Mapoly0119s0021 Marchantia polymorpha HOM05D007853 ORTHO05D009873 1.8e-33 147.5 207 37.7
Lalb_Chr00c01g0403781 Lupinus albus HOM05D007853 ORTHO05D009873 2.3e-23 114.0 146 46.6
Pp3c2_14180 Physcomitrium patens HOM05D007853 ORTHO05D009873 2.6e-19 100.5 217 29.0
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 2.9e-18 97.1 61 67.2
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.6e-16 91.3 226 30.1
Gohir.A05G313700 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.3e-15 88.2 215 28.4
TAR374G1110 Trochodendron aralioides HOM05D004907 ORTHO05D005707 1.3e-15 88.2 219 28.3
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 1.7e-15 87.8 197 32.5
Peaxi162Scf00158g00003 Petunia axillaris HOM05D004907 ORTHO05D005707 1.7e-15 87.8 227 27.8
SEGI_08843 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 1.7e-15 87.8 197 31.5
GSVIVG01013786001 Vitis vinifera HOM05D004907 ORTHO05D005707 3.0e-15 87.0 217 29.0
SEGI_19660 Sequoiadendron giganteum HOM05D007753 ORTHO05D009385 6.6e-15 85.9 219 30.6
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 8.6e-15 85.5 192 32.3
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 1.9e-14 84.3 177 31.1
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 1.9e-14 84.3 193 31.1
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 3.3e-14 83.6 227 26.9
SEGI_20973 Sequoiadendron giganteum HOM05D007753 ORTHO05D009385 3.3e-14 83.6 196 31.1
PSO170G1656 Papaver somniferum HOM05D004907 ORTHO05D005707 4.3e-14 83.2 273 27.5
Dinv15270 Davidia involucrata HOM05D004907 ORTHO05D005707 9.5e-14 82.0 188 33.0
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 2.1e-13 80.9 220 27.7
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 2.1e-13 80.9 217 26.3
Lsat_1_v5_gn_3_28580 Lactuca sativa HOM05D004907 ORTHO05D005707 8.1e-13 79.0 189 28.6
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 8.1e-13 79.0 197 29.4
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.4e-12 78.2 253 30.4
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 3.1e-12 77.0 183 30.1
Mapoly0115s0063 Marchantia polymorpha HOM05D007853 ORTHO05D009873 3.1e-12 77.0 131 31.3
Potri.010G042900 Populus trichocarpa HOM05D004907 ORTHO05D005707 3.1e-12 77.0 207 31.4
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 4.0e-12 76.6 188 28.2
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 5.2e-12 76.3 183 29.5
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 5.2e-12 76.3 217 24.9
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 6.8e-12 75.9 256 28.9
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 8.9e-12 75.5 178 28.7
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 8.9e-12 75.5 180 28.9
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 1.2e-11 75.1 232 28.0
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 1.2e-11 75.1 234 28.2
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 1.2e-11 75.1 181 27.1
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 1.5e-11 74.7 246 28.0
SMO276G0031 Selaginella moellendorffii HOM05D007753 ORTHO05D009385 2.6e-11 73.9 180 25.6
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 3.4e-11 73.6 227 26.4
Cc11_g15390 Coffea canephora HOM05D004907 ORTHO05D005707 4.4e-11 73.2 203 29.6
Sabra10G0024600 Salix brachista HOM05D004907 ORTHO05D005707 4.4e-11 73.2 244 26.2
Mapoly0045s0086 Marchantia polymorpha HOM05D005977 ORTHO05D009385 5.8e-11 72.8 149 24.8
Mapoly0168s0028 Marchantia polymorpha HOM05D003005 ORTHO05D007546 5.8e-11 72.8 171 26.9
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 1.3e-10 71.6 182 25.8
Sc04g0009300 Simmondsia chinensis HOM05D004907 ORTHO05D005707 1.3e-10 71.6 154 29.2
SMO116G0047 Selaginella moellendorffii HOM05D002809 ORTHO05D004563 1.7e-10 71.2 172 25.6
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 2.2e-10 70.9 227 25.6
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 2.9e-10 70.5 255 26.7
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 2.9e-10 70.5 264 27.7
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 2.9e-10 70.5 263 24.3
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 6.4e-10 69.3 269 24.5
Mapoly0101s0058 Marchantia polymorpha HOM05D002809 ORTHO05D004939 1.4e-09 68.2 151 30.5
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 1.9e-09 67.8 217 24.0
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 1.9e-09 67.8 161 31.1
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 7.1e-09 65.9 196 25.0
Mapoly0125s0029 Marchantia polymorpha HOM05D002809 ORTHO05D009091 1.2e-08 65.1 190 27.9
AagrBONN_evm.TU.Sc2ySwM_362.2669 Anthoceros agrestis HOM05D002809 ORTHO05D009873 2.1e-08 64.3 226 23.0
PSO063G4965 Papaver somniferum HOM05D004907 ORTHO05D005707 6.0e-08 62.8 168 26.8
SEGI_02380 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 7.8e-08 62.4 37 75.7
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 1.3e-07 61.6 191 26.7
Pp3c10_6350 Physcomitrium patens HOM05D007853 ORTHO05D009873 3.0e-07 60.5 100 30.0
Pp3c26_380 Physcomitrium patens HOM05D002809 ORTHO05D007546 3.0e-07 60.5 125 27.2
CDE05G2424 Ceratophyllum demersum HOM05D005561 ORTHO05D006834 4.3e-06 56.6 127 28.3
Nn3g16812 Nelumbo nucifera HOM05D004907 ORTHO05D005707 5.6e-06 56.2 200 29.5
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 5.6e-06 56.2 222 23.0
SEGI_19761 Sequoiadendron giganteum HOM05D041656 ORTHO05D009873 9.6e-06 55.5 50 52.0
SEGI_28857 Sequoiadendron giganteum HOM05D041656 ORTHO05D009873 9.6e-06 55.5 50 52.0


User provided reference genes

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