Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24760 Corylus avellana HOM05D007427 ORTHO05D006413 6.2e-26 121.3 149 100.0
QL09p044390 Quercus lobata HOM05D007427 ORTHO05D006413 6.2e-18 94.7 60 80.0
CiPaw.04G107800 Carya illinoinensis HOM05D007427 ORTHO05D006413 2.4e-17 92.8 55 83.6
QL09p044388 Quercus lobata HOM05D007427 ORTHO05D006413 1.7e-15 86.7 54 79.6
CiPaw.03G152700 Carya illinoinensis HOM05D007427 ORTHO05D006413 1.1e-14 84.0 64 75.0
Duzib138G0914 Durio zibethinus HOM05D007427 ORTHO05D006413 3.2e-14 82.4 57 73.7
Rhsim13G0042300 Rhododendron simsii HOM05D007427 ORTHO05D006413 3.2e-14 82.4 59 67.8
ClCG09G009340 Citrullus lanatus HOM05D007427 ORTHO05D006413 1.6e-13 80.1 58 65.5
MELO3C024163.2 Cucumis melo HOM05D007427 ORTHO05D006413 3.5e-13 79.0 59 66.1
Sed0020523 Sechium edule HOM05D007427 ORTHO05D006413 4.6e-13 78.6 59 66.1
Ciclev10022672m.g Citrus clementina HOM05D007427 ORTHO05D006413 6.0e-13 78.2 76 59.2
CsaV3_7G025650 Cucumis sativus L. HOM05D007427 ORTHO05D006413 7.9e-13 77.8 59 64.4
Thecc.01G231600 Theobroma cacao HOM05D007427 ORTHO05D006413 7.9e-13 77.8 57 64.9
COL.COLO4_28358 Corchorus olitorius HOM05D007427 ORTHO05D006413 1.0e-12 77.4 63 61.9
Lj1g0018605 Lotus japonicus HOM05D007427 ORTHO05D006413 2.3e-12 76.3 57 64.9
Duzib211G0080 Durio zibethinus HOM05D007427 ORTHO05D006413 3.0e-12 75.9 54 66.7
Cpa.g.sc8.193 Carica papaya HOM05D007427 ORTHO05D006413 6.7e-12 74.7 58 67.2
Ca_08774_v3 Cicer arietinum L. HOM05D007427 ORTHO05D006413 6.7e-12 74.7 57 66.7
Glyma.03G170800 Glycine max HOM05D007427 ORTHO05D006413 8.7e-12 74.3 59 61.0
Prupe.8G208000 Prunus persica HOM05D007427 ORTHO05D006413 1.1e-11 73.9 59 71.2
Hma1.2p1_1858F.1_g305540 Hydrangea macrophylla HOM05D007427 ORTHO05D006413 1.5e-11 73.6 54 61.1
ClCG09G009270 Citrullus lanatus HOM05D007427 ORTHO05D006413 1.9e-11 73.2 59 64.4
Ciclev10022773m.g Citrus clementina HOM05D007427 ORTHO05D006413 4.3e-11 72.0 74 56.8
Gohir.A07G154400 Gossypium hirsutum HOM05D007427 ORTHO05D006413 5.6e-11 71.6 59 64.4
Gohir.D07G160800 Gossypium hirsutum HOM05D007427 ORTHO05D006413 5.6e-11 71.6 59 64.4
Gorai.001G183700 Gossypium raimondii HOM05D007427 ORTHO05D006413 5.6e-11 71.6 59 64.4
Actinidia23744 Actinidia chinensis HOM05D007427 ORTHO05D006413 7.4e-11 71.2 55 63.6
CiPaw.04G107700 Carya illinoinensis HOM05D007427 ORTHO05D006413 7.4e-11 71.2 62 62.9
Thecc.01G231700 Theobroma cacao HOM05D007427 ORTHO05D006413 7.4e-11 71.2 67 56.7
Glyma.19G171900 Glycine max HOM05D007427 ORTHO05D006413 9.6e-11 70.9 59 57.6
MD05G1181500 Malus domestica HOM05D007427 ORTHO05D006413 1.6e-10 70.1 59 66.1
Phvul.001G168900 Phaseolus vulgaris HOM05D007427 ORTHO05D006413 2.8e-10 69.3 57 57.9
CANSAT01G2272 Cannabis sativa HOM05D007427 ORTHO05D006413 3.7e-10 68.9 64 59.4
Lalb_Chr25g0289621 Lupinus albus HOM05D007427 ORTHO05D006413 4.8e-10 68.6 54 57.4
Medtr7g099670 Medicago truncatula HOM05D007427 ORTHO05D006413 4.8e-10 68.6 59 61.0
Glyma.03G170900 Glycine max HOM05D007427 ORTHO05D006413 6.2e-10 68.2 59 57.6
Dinv19234 Davidia involucrata HOM05D007427 ORTHO05D006413 8.1e-10 67.8 54 63.0
Nn3g19877 Nelumbo nucifera HOM05D007427 ORTHO05D006413 8.1e-10 67.8 63 65.1
RcHm_v2.0_Chr6g0285411 Rosa chinensis HOM05D007427 ORTHO05D006413 8.1e-10 67.8 61 65.6
COL.COLO4_17317 Corchorus olitorius HOM05D007427 ORTHO05D006413 1.1e-09 67.4 60 60.0
Lalb_Chr01g0019331 Lupinus albus HOM05D007427 ORTHO05D006413 1.4e-09 67.0 55 54.5
CSS0029156 Camellia sinensis var. sinensis HOM05D007427 ORTHO05D006413 1.8e-09 66.6 60 63.3
Gohir.A07G154300 Gossypium hirsutum HOM05D007427 ORTHO05D006413 2.4e-09 66.2 72 50.0
Gohir.D07G160600 Gossypium hirsutum HOM05D007427 ORTHO05D006413 2.4e-09 66.2 72 50.0
VMungo1383G3325 Vigna mungo HOM05D007427 ORTHO05D006413 2.4e-09 66.2 59 59.3
Sabra02G0191700 Salix brachista HOM05D007427 ORTHO05D006413 3.1e-09 65.9 65 58.5
Nitab4.5_0001740g0060 Nicotiana tabacum HOM05D007427 ORTHO05D006413 4.0e-09 65.5 53 64.2
TAR362G1030 Trochodendron aralioides HOM05D007427 ORTHO05D006413 4.0e-09 65.5 65 61.5
arahy.Tifrunner.gnm1.ann1.KG3A2Z Arachis hypogaea HOM05D007427 ORTHO05D006413 5.3e-09 65.1 58 62.1
Lj1g0008336 Lotus japonicus HOM05D007427 ORTHO05D006413 5.3e-09 65.1 52 61.5
CSS0036288 Camellia sinensis var. sinensis HOM05D007427 ORTHO05D006413 6.9e-09 64.7 60 61.7
Cpa.g.sc8.192 Carica papaya HOM05D017908 ORTHO05D020344 6.9e-09 64.7 45 73.3
Psat3g049800 Pisum sativum HOM05D007427 ORTHO05D006413 9.0e-09 64.3 60 63.3
CsaV3_7G025680 Cucumis sativus L. HOM05D007427 ORTHO05D006413 1.2e-08 63.9 53 58.5
Potri.002G252400 Populus trichocarpa HOM05D007427 ORTHO05D006413 1.5e-08 63.5 69 58.0
Cc01_g17390 Coffea canephora HOM05D007427 ORTHO05D006413 2.0e-08 63.2 55 67.3
Glyma.10G043100 Glycine max HOM05D007427 ORTHO05D006413 2.0e-08 63.2 57 57.9
PGSC0003DMG400015809 Solanum tuberosum HOM05D014142 ORTHO05D006413 2.0e-08 63.2 52 69.2
Atru.chr5.1886 Acer truncatum HOM05D007427 ORTHO05D006413 4.5e-08 62.0 85 49.4
MSTRG.21440 Avicennia marina HOM05D007427 ORTHO05D006413 4.5e-08 62.0 59 50.8
Glyma.19G171800 Glycine max HOM05D007427 ORTHO05D006413 4.5e-08 62.0 60 58.3
TWI59G1478 Tripterygium wilfordii HOM05D007427 ORTHO05D006413 7.6e-08 61.2 57 61.4
Phvul.007G156700 Phaseolus vulgaris HOM05D007427 ORTHO05D006413 1.7e-07 60.1 57 59.6
Sopen09g025110 Solanum pennellii HOM05D014142 ORTHO05D006413 1.7e-07 60.1 52 69.2
Nitab4.5_0001657g0050 Nicotiana tabacum HOM05D014142 ORTHO05D006413 2.9e-07 59.3 52 67.3
Glyma.13G130600 Glycine max HOM05D007427 ORTHO05D006413 3.8e-07 58.9 52 63.5
Gohir.D08G211500 Gossypium hirsutum HOM05D007427 ORTHO05D006413 3.8e-07 58.9 73 45.2
Gorai.004G224800 Gossypium raimondii HOM05D007427 ORTHO05D006413 3.8e-07 58.9 73 45.2
Oeu052109.1 Olea europaea HOM05D038651 ORTHO05D006413 3.8e-07 58.9 53 64.2
Oeu052110.1 Olea europaea HOM05D038651 ORTHO05D006413 3.8e-07 58.9 53 64.2
Oeu052111.1 Olea europaea HOM05D038651 ORTHO05D006413 3.8e-07 58.9 53 64.2
DCAR_012627 Daucus carota HOM05D007427 ORTHO05D006413 4.9e-07 58.5 60 53.3
Gohir.A08G193800 Gossypium hirsutum HOM05D007427 ORTHO05D006413 4.9e-07 58.5 73 45.2
SalBow4G2254 Salvia bowleyana HOM05D007427 ORTHO05D006413 4.9e-07 58.5 57 54.4
MELO3C012793.2 Cucumis melo HOM05D007427 ORTHO05D006413 6.4e-07 58.2 52 53.8
Duzib138G1712 Durio zibethinus HOM05D007427 ORTHO05D006413 6.4e-07 58.2 39 69.2
Sopen09g025140 Solanum pennellii HOM05D014142 ORTHO05D006413 6.4e-07 58.2 52 67.3
SGA_v2.0_scaffold42G16152 Striga asiatica HOM05D007427 ORTHO05D006413 6.4e-07 58.2 65 58.5
THA.LOC104804025 Tarenaya hassleriana HOM05D009947 ORTHO05D012150 6.4e-07 58.2 47 61.7
Manes.13G043400 Manihot esculenta HOM05D007427 ORTHO05D006413 8.4e-07 57.8 56 55.4
Medtr1g069085 Medicago truncatula HOM05D007427 ORTHO05D006413 8.4e-07 57.8 58 58.6
Nitab4.5_0000813g0050 Nicotiana tabacum HOM05D014142 ORTHO05D006413 8.4e-07 57.8 52 63.5
Psat6g064560 Pisum sativum HOM05D007427 ORTHO05D006413 8.4e-07 57.8 58 53.4
SGA_v2.0_scaffold1G00704 Striga asiatica HOM05D007427 ORTHO05D006413 8.4e-07 57.8 60 51.7
MELO3C024161.2 Cucumis melo HOM05D007427 ORTHO05D006413 1.1e-06 57.4 51 52.9
CAN.G5.23 Capsicum annuum HOM05D014142 ORTHO05D006413 1.9e-06 56.6 52 63.5
unitig_22.g6317 Utricularia gibba HOM05D007427 ORTHO05D006413 1.9e-06 56.6 60 51.7
CsaV3_3G039490 Cucumis sativus L. HOM05D007427 ORTHO05D006413 2.4e-06 56.2 57 56.1
ECA236G2240 Erigeron canadensis HOM05D007427 ORTHO05D006413 2.4e-06 56.2 57 54.4
PSO017G4218 Papaver somniferum HOM05D007427 ORTHO05D006413 2.4e-06 56.2 66 53.0
Sopen09g025130 Solanum pennellii HOM05D014142 ORTHO05D006413 2.4e-06 56.2 52 65.4
SGA_v2.0_scaffold8G04664 Striga asiatica HOM05D007427 ORTHO05D006413 2.4e-06 56.2 57 52.6
Carub.0007s1161 Capsella rubella HOM05D008344 ORTHO05D006413 3.2e-06 55.8 61 55.7
PGSC0003DMG400015810 Solanum tuberosum HOM05D014142 ORTHO05D006413 3.2e-06 55.8 52 65.4
FvH4_2g19680 Fragaria vesca HOM05D007427 ORTHO05D006413 7.1e-06 54.7 62 56.5
FAN24G2151 Fragaria x ananassa HOM05D007427 ORTHO05D006413 7.1e-06 54.7 62 56.5
Gorai.001G183600 Gossypium raimondii HOM05D007427 ORTHO05D006413 7.1e-06 54.7 86 40.7
PSO063G2436 Papaver somniferum HOM05D007427 ORTHO05D006413 7.1e-06 54.7 65 52.3
unitig_8.g3079 Utricularia gibba HOM05D007427 ORTHO05D006413 7.1e-06 54.7 62 46.8
Migut.N02250 Erythranthe guttata HOM05D007427 ORTHO05D006413 9.3e-06 54.3 60 51.7
FAN15G2923 Fragaria x ananassa HOM05D007427 ORTHO05D006413 9.3e-06 54.3 62 56.5
FAN27G1788 Fragaria x ananassa HOM05D007427 ORTHO05D006413 9.3e-06 54.3 62 56.5
Lsat_1_v5_gn_9_11040 Lactuca sativa HOM05D047643 ORTHO05D006413 9.3e-06 54.3 67 53.7
Potri.002G252200 Populus trichocarpa HOM05D007427 ORTHO05D006413 9.3e-06 54.3 44 63.6


User provided reference genes

Program Settings