Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24704 Corylus avellana HOM05D007706 ORTHO05D009593 4.0e-151 538.5 367 100.0
Cfa002482 Carpinus fangiana HOM05D007706 ORTHO05D009593 1.4e-132 476.9 369 93.0
QL09p041349 Quercus lobata HOM05D007706 ORTHO05D009593 4.7e-75 285.8 383 68.9
CiPaw.04G190500 Carya illinoinensis HOM05D007706 ORTHO05D009593 3.1e-63 246.5 282 56.7
Thecc.01G250700 Theobroma cacao HOM05D007706 ORTHO05D009593 3.7e-56 223.0 301 56.5
CiPaw.03G270700 Carya illinoinensis HOM05D007706 ORTHO05D009593 2.0e-54 217.2 390 58.7
Prupe.8G215700 Prunus persica HOM05D007706 ORTHO05D009593 5.6e-52 209.1 284 54.2
MD05G1189100 Malus domestica HOM05D007706 ORTHO05D009593 4.7e-51 206.1 289 53.6
Duzib138G1124 Durio zibethinus HOM05D007706 ORTHO05D009593 1.2e-49 201.4 301 51.5
Lj1g0013336 Lotus japonicus HOM05D007706 ORTHO05D009593 4.4e-49 199.5 291 49.5
Duzib133G1528 Durio zibethinus HOM05D007706 ORTHO05D009593 4.1e-47 193.0 297 51.2
Gohir.D07G210400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 5.4e-47 192.6 308 51.3
Gorai.001G237800 Gossypium raimondii HOM05D007706 ORTHO05D009593 1.9e-44 184.1 306 50.7
Potri.002G256900 Populus trichocarpa HOM05D007706 ORTHO05D009593 2.5e-44 183.7 300 48.3
Glyma.19G168300 Glycine max HOM05D007706 ORTHO05D009593 4.3e-44 183.0 291 43.6
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 1.6e-43 181.0 297 43.8
VMungo1383G0992 Vigna mungo HOM05D007706 ORTHO05D009593 2.1e-43 180.6 296 44.6
arahy.Tifrunner.gnm1.ann1.NJ5037 Arachis hypogaea HOM05D007706 ORTHO05D009593 2.8e-43 180.3 293 45.1
Gohir.A07G204400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 4.7e-43 179.5 301 49.8
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 2.3e-42 177.2 298 44.0
Sabra02G0195300 Salix brachista HOM05D007706 ORTHO05D009593 5.2e-42 176.0 294 47.6
arahy.Tifrunner.gnm1.ann1.S77KHM Arachis hypogaea HOM05D007706 ORTHO05D009593 2.0e-41 174.1 292 44.5
Glyma.03G167200 Glycine max HOM05D007706 ORTHO05D009593 5.8e-41 172.6 289 43.9
TPR.G30860 Trifolium pratense HOM05D003225 ORTHO05D003818 9.9e-41 171.8 304 44.1
TPR.G20053 Trifolium pratense HOM05D007706 ORTHO05D009593 2.9e-40 170.2 294 43.5
Dinv16399 Davidia involucrata HOM05D007706 ORTHO05D009593 1.1e-39 168.3 296 47.6
CSS0048547 Camellia sinensis var. sinensis HOM05D007706 ORTHO05D009593 3.2e-39 166.8 299 46.8
Ciclev10020687m.g Citrus clementina HOM05D007706 ORTHO05D009593 4.1e-39 166.4 297 49.8
Lalb_Chr20g0113631 Lupinus albus HOM05D007706 ORTHO05D009593 4.1e-39 166.4 290 46.2
RcHm_v2.0_Chr6g0286691 Rosa chinensis HOM05D007706 ORTHO05D009593 7.1e-39 165.6 288 47.9
TWI12G0795 Tripterygium wilfordii HOM05D007706 ORTHO05D009593 4.6e-38 162.9 293 49.8
Psat3g051920 Pisum sativum HOM05D007706 ORTHO05D009593 6.6e-37 159.1 295 44.1
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 8.6e-37 158.7 295 43.7
Rhsim13G0040100 Rhododendron simsii HOM05D007706 ORTHO05D009593 1.5e-36 157.9 298 43.0
Medtr7g098450 Medicago truncatula HOM05D007706 ORTHO05D009593 1.9e-36 157.5 286 43.7
FAN27G2030 Fragaria x ananassa HOM05D007706 ORTHO05D009593 2.5e-36 157.1 290 45.5
Ca_08762_v3 Cicer arietinum L. HOM05D003225 ORTHO05D009593 7.3e-36 155.6 261 43.7
PGR031G0475 Punica granatum HOM05D007706 ORTHO05D009593 6.2e-35 152.5 292 42.5
Ca_30216_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 8.1e-35 152.1 250 43.2
Psat3g053960 Pisum sativum HOM05D007706 ORTHO05D009593 8.1e-35 152.1 292 43.8
FvH4_2g20530 Fragaria vesca HOM05D007706 ORTHO05D009593 3.1e-34 150.2 284 51.4
FAN24G1454 Fragaria x ananassa HOM05D007706 ORTHO05D009593 3.1e-34 150.2 284 51.4
Manes.12G037850 Manihot esculenta HOM05D007706 ORTHO05D009593 5.2e-34 149.4 294 45.6
FAN15G0362 Fragaria x ananassa HOM05D007706 ORTHO05D009593 1.2e-33 148.3 284 50.4
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 2.6e-33 147.1 290 42.1
Hma1.2p1_1930F.1_g307940 Hydrangea macrophylla HOM05D007706 ORTHO05D009593 2.9e-32 143.7 297 42.1
Dinv34676 Davidia involucrata HOM05D007706 ORTHO05D009593 6.4e-32 142.5 294 49.0
ECA236G0985 Erigeron canadensis HOM05D007706 ORTHO05D009593 6.4e-32 142.5 287 39.4
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 8.4e-32 142.1 313 41.5
Lj2C1142T11 Lonicera japonica HOM05D007706 ORTHO05D009593 1.9e-31 141.0 295 41.0
Medtr7g099260 Medicago truncatula HOM05D007706 ORTHO05D009593 2.4e-31 140.6 297 43.1
Solyc09g064630.3 Solanum lycopersicum HOM05D007706 ORTHO05D009593 5.4e-31 139.4 302 37.7
Sopen09g025790 Solanum pennellii HOM05D007706 ORTHO05D009593 1.2e-30 138.3 303 38.3
PGSC0003DMG400008584 Solanum tuberosum HOM05D007706 ORTHO05D009593 3.5e-30 136.7 301 37.5
Cpa.g.sc87.26 Carica papaya HOM05D007706 ORTHO05D009593 1.0e-29 135.2 299 39.5
vmacro02710 Vaccinium macrocarpon HOM05D007706 ORTHO05D009593 3.9e-29 133.3 293 43.0
Lsat_1_v5_gn_8_92000 Lactuca sativa HOM05D007706 ORTHO05D009593 6.6e-29 132.5 294 44.2
Cc01_g17810 Coffea canephora HOM05D007706 ORTHO05D009593 8.7e-29 132.1 294 37.8
Peaxi162Scf00043g02924 Petunia axillaris HOM05D007706 ORTHO05D009593 1.1e-28 131.7 269 38.3
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 1.9e-28 131.0 303 39.9
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 2.1e-27 127.5 292 39.0
Eucgr.A01320 Eucalyptus grandis HOM05D007706 ORTHO05D009593 2.1e-27 127.5 306 38.6
HanXRQChr04g0108691 Helianthus annuus HOM05D007706 ORTHO05D009593 2.8e-27 127.1 295 42.0
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 8.1e-27 125.6 285 40.0
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 2.4e-26 124.0 294 41.2
Nitab4.5_0007992g0040 Nicotiana tabacum HOM05D007706 ORTHO05D009593 9.0e-26 122.1 305 35.1
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 3.8e-24 116.7 305 36.7
Migut.D00475 Erythranthe guttata HOM05D007706 ORTHO05D009593 4.9e-24 116.3 289 40.8
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 1.9e-23 114.4 290 39.0
SGA_v2.0_scaffold1G00652 Striga asiatica HOM05D007706 ORTHO05D009593 5.4e-23 112.8 293 36.5
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 1.2e-22 111.7 298 32.6
CANSAT01G1705 Cannabis sativa HOM05D007706 ORTHO05D009593 1.2e-22 111.7 283 43.5
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 1.2e-22 111.7 305 35.4
SalBow4G1824 Salvia bowleyana HOM05D007706 ORTHO05D009593 1.6e-22 111.3 289 34.3
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 7.8e-22 109.0 291 36.4
Migut.N02230 Erythranthe guttata HOM05D007706 ORTHO05D009593 1.3e-21 108.2 296 39.5
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 3.9e-21 106.7 294 34.7
MSTRG.18353 Avicennia marina HOM05D007706 ORTHO05D009593 1.1e-20 105.1 323 32.8
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 1.9e-20 104.4 303 33.7
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 2.5e-20 104.0 303 34.3
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 4.8e-19 99.8 296 34.5
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 1.4e-18 98.2 287 33.4
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 2.4e-18 97.4 328 34.8
MELO3C022390.2 Cucumis melo HOM05D007706 ORTHO05D009593 2.6e-17 94.0 288 40.3
CsaV3_6G007370 Cucumis sativus L. HOM05D007706 ORTHO05D009593 2.6e-17 94.0 293 34.5
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 2.9e-16 90.5 291 34.4
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 8.4e-16 89.0 218 37.6
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 1.1e-15 88.6 291 33.3
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 1.4e-15 88.2 277 33.2
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 3.2e-15 87.0 292 33.9
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 1.2e-14 85.1 304 34.5
ClCG06G001430 Citrullus lanatus HOM05D007706 ORTHO05D009593 7.9e-14 82.4 306 34.3
HPP92_022478 Vanilla planifolia HOM05D007706 ORTHO05D009593 5.1e-13 79.7 290 29.7
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 8.7e-13 79.0 309 29.8
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 1.5e-12 78.2 113 42.5
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 4.3e-12 76.6 287 33.8
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 5.6e-12 76.3 239 31.0
PSO675G2181 Papaver somniferum HOM05D007706 ORTHO05D009593 5.6e-12 76.3 233 36.1
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 1.3e-11 75.1 288 31.9
Sopen12g010960 Solanum pennellii HOM05D000004 ORTHO05D009593 2.8e-11 73.9 194 34.5
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 3.7e-11 73.6 89 42.7
Rhsim02G0044100 Rhododendron simsii HOM05D006910 ORTHO05D008937 3.7e-11 73.6 290 34.5
CDE11G0528 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 4.8e-11 73.2 294 29.9
CDE05G1228 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 6.2e-11 72.8 212 32.5
Os03g0140700 Oryza sativa ssp. japonica HOM05D007706 ORTHO05D009593 8.1e-11 72.4 296 33.1
Nitab4.5_0000845g0230 Nicotiana tabacum HOM05D007706 ORTHO05D009593 1.4e-10 71.6 88 45.5
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 4.0e-10 70.1 42 73.8
ATR0787G077 Amborella trichopoda HOM05D007706 ORTHO05D009593 5.3e-10 69.7 300 35.7
SEGI_40436 Sequoiadendron giganteum HOM05D052464 ORTHO05D009593 2.6e-09 67.4 302 26.2
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 7.6e-09 65.9 51 62.7
Lalb_Chr01g0019491 Lupinus albus HOM05D007706 ORTHO05D009593 1.7e-08 64.7 102 49.0
Oeu026810.1 Olea europaea HOM05D007706 ORTHO05D009593 1.7e-08 64.7 36 75.0
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 4.9e-08 63.2 41 65.9
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 6.4e-08 62.8 71 49.3
Actinidia30127 Actinidia chinensis HOM05D007706 ORTHO05D009593 1.1e-07 62.0 67 52.2
AUR62018038 Chenopodium quinoa HOM05D006910 ORTHO05D008937 1.4e-07 61.6 43 60.5
COL.COLO4_10568 Corchorus olitorius HOM05D007706 ORTHO05D009593 1.9e-07 61.2 52 63.5
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 4.2e-07 60.1 39 66.7
Lj5g0027299 Lotus japonicus HOM05D006910 ORTHO05D008937 4.2e-07 60.1 42 59.5
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 5.5e-07 59.7 59 54.2
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 7.1e-07 59.3 52 53.8
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 7.1e-07 59.3 41 63.4
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 7.1e-07 59.3 39 66.7
Nitab4.5_0002210g0060 Nicotiana tabacum HOM05D006910 ORTHO05D008937 9.3e-07 58.9 42 66.7
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 1.2e-06 58.5 70 41.4
AUR62015241 Chenopodium quinoa HOM05D006910 ORTHO05D008937 1.2e-06 58.5 40 60.0
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.2e-06 58.5 42 64.3
Sabra18G0110600 Salix brachista HOM05D001903 ORTHO05D001847 1.2e-06 58.5 283 28.6
GSVIVG01028428001 Vitis vinifera HOM05D006910 ORTHO05D008937 1.2e-06 58.5 31 80.6
Glyma.10G190700 Glycine max HOM05D006910 ORTHO05D008937 1.6e-06 58.2 41 61.0
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 2.1e-06 57.8 37 70.3
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 2.1e-06 57.8 115 36.5
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 2.7e-06 57.4 41 63.4
Potri.018G130100 Populus trichocarpa HOM05D001903 ORTHO05D001847 2.7e-06 57.4 283 28.3
Phvul.011G133545 Phaseolus vulgaris HOM05D006910 ORTHO05D008937 3.5e-06 57.0 41 58.5
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 4.6e-06 56.6 79 40.5
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 4.6e-06 56.6 37 64.9
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 4.6e-06 56.6 38 63.2
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 6.0e-06 56.2 248 28.6
PGR031G1888 Punica granatum HOM05D006910 ORTHO05D008937 6.0e-06 56.2 38 65.8
EL10Ac3g06675 Beta vulgaris HOM05D006910 ORTHO05D008937 7.9e-06 55.8 40 55.0
unitig_748.g8295 Utricularia gibba HOM05D006910 ORTHO05D008937 7.9e-06 55.8 292 26.0


User provided reference genes

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