Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24699 Corylus avellana HOM05D004476 ORTHO05D002200 1.1e-59 233.0 116 100.0
Cfa013479 Carpinus fangiana HOM05D004476 ORTHO05D002200 2.5e-14 82.4 43 93.0
Haze_22059 Corylus avellana HOM05D004476 ORTHO05D002200 5.5e-14 81.3 43 90.7
CiPaw.07G199800 Carya illinoinensis HOM05D004476 ORTHO05D002200 1.2e-13 80.1 43 88.4
unitig_0.g577 Utricularia gibba HOM05D004476 ORTHO05D002200 1.2e-13 80.1 42 90.5
Potri.018G133500 Populus trichocarpa HOM05D004476 ORTHO05D002200 1.6e-13 79.7 42 90.5
Sabra18G0113200 Salix brachista HOM05D004476 ORTHO05D002200 1.6e-13 79.7 42 90.5
MSTRG.19721 Avicennia marina HOM05D004476 ORTHO05D002200 2.1e-13 79.3 42 90.5
CiPaw.08G030800 Carya illinoinensis HOM05D004476 ORTHO05D002200 2.1e-13 79.3 42 88.1
Migut.J01504 Erythranthe guttata HOM05D004476 ORTHO05D002200 2.1e-13 79.3 43 90.7
AL7G22400 Arabidopsis lyrata HOM05D004476 ORTHO05D002200 2.7e-13 79.0 42 88.1
AT4G29850 Arabidopsis thaliana HOM05D004476 ORTHO05D002200 2.7e-13 79.0 42 88.1
CARHR237750 Cardamine hirsuta HOM05D004476 ORTHO05D002200 2.7e-13 79.0 43 86.0
unitig_60.g25493 Utricularia gibba HOM05D004476 ORTHO05D002200 2.7e-13 79.0 42 90.5
FvH4_4g06710 Fragaria vesca HOM05D004476 ORTHO05D002200 3.6e-13 78.6 42 90.5
FAN07G1794 Fragaria x ananassa HOM05D004476 ORTHO05D002200 3.6e-13 78.6 42 90.5
FAN12G3358 Fragaria x ananassa HOM05D004476 ORTHO05D002200 3.6e-13 78.6 42 90.5
FAN17G0770 Fragaria x ananassa HOM05D004476 ORTHO05D002200 3.6e-13 78.6 42 90.5
FAN22G1515 Fragaria x ananassa HOM05D004476 ORTHO05D002200 3.6e-13 78.6 42 90.5
Manes.04G036000 Manihot esculenta HOM05D004476 ORTHO05D002200 3.6e-13 78.6 42 88.1
Potri.006G072000 Populus trichocarpa HOM05D004476 ORTHO05D002200 3.6e-13 78.6 44 81.8
RcHm_v2.0_Chr4g0398651 Rosa chinensis HOM05D004476 ORTHO05D002200 3.6e-13 78.6 42 90.5
GSVIVG01029250001 Vitis vinifera HOM05D004476 ORTHO05D002200 3.6e-13 78.6 42 88.1
Cpa.g.sc115.54 Carica papaya HOM05D004476 ORTHO05D002200 4.7e-13 78.2 42 88.1
Lalb_Chr11g0074651 Lupinus albus HOM05D004476 ORTHO05D002200 4.7e-13 78.2 42 88.1
Oeu025208.1 Olea europaea HOM05D004476 ORTHO05D002200 4.7e-13 78.2 43 86.0
BcaNung00496 Brassica carinata HOM05D004476 ORTHO05D002200 6.1e-13 77.8 43 83.7
A03p59280 Brassica napus HOM05D004476 ORTHO05D002200 6.1e-13 77.8 43 83.7
C07p57290 Brassica napus HOM05D004476 ORTHO05D002200 6.1e-13 77.8 43 83.7
BolC7t46198H Brassica oleracea HOM05D004476 ORTHO05D002200 6.1e-13 77.8 43 83.7
BraA03t14985Z Brassica rapa HOM05D004476 ORTHO05D002200 6.1e-13 77.8 43 83.7
Manes.11G129400 Manihot esculenta HOM05D004476 ORTHO05D002200 6.1e-13 77.8 42 85.7
Atru.chr7.991 Acer truncatum HOM05D004476 ORTHO05D002200 8.0e-13 77.4 42 85.7
Aqoxy7G02925 Aquilegia oxysepala HOM05D004476 ORTHO05D002200 8.0e-13 77.4 42 83.3
MSTRG.6242 Avicennia marina HOM05D004476 ORTHO05D002200 8.0e-13 77.4 42 90.5
Carub.0004s1478 Capsella rubella HOM05D004476 ORTHO05D002200 8.0e-13 77.4 42 85.7
AUR62027442 Chenopodium quinoa HOM05D004476 ORTHO05D002200 8.0e-13 77.4 42 85.7
AUR62031259 Chenopodium quinoa HOM05D004476 ORTHO05D002200 8.0e-13 77.4 42 85.7
Thhalv10026650m.g Eutrema salsugineum HOM05D004476 ORTHO05D002200 8.0e-13 77.4 42 85.7
SGA_v2.0_scaffold17G07943 Striga asiatica HOM05D004476 ORTHO05D002200 8.0e-13 77.4 43 86.0
CDE04G0988 Ceratophyllum demersum HOM05D004476 ORTHO05D002200 1.0e-12 77.0 45 77.8
Ciclev10009996m.g Citrus clementina HOM05D004476 ORTHO05D002200 1.4e-12 76.6 42 85.7
Aa31LG2G20690 Aethionema arabicum HOM05D004476 ORTHO05D002200 1.8e-12 76.3 42 83.3
EL10Ac8g19281 Beta vulgaris HOM05D004476 ORTHO05D002200 1.8e-12 76.3 42 83.3
CANSAT01G2105 Cannabis sativa HOM05D004476 ORTHO05D002200 1.8e-12 76.3 42 88.1
Cc06_g12980 Coffea canephora HOM05D004476 ORTHO05D002200 1.8e-12 76.3 42 85.7
Eucgr.F03859 Eucalyptus grandis HOM05D004476 ORTHO05D002200 1.8e-12 76.3 43 81.4
Thecc.09G188500 Theobroma cacao HOM05D004476 ORTHO05D002200 1.8e-12 76.3 42 85.7
COL.COLO4_23446 Corchorus olitorius HOM05D004476 ORTHO05D002200 2.3e-12 75.9 42 83.3
Sp7g27660 Schrenkiella parvula HOM05D004476 ORTHO05D002200 2.3e-12 75.9 42 83.3
ClCG06G013730 Citrullus lanatus HOM05D004476 ORTHO05D002200 3.0e-12 75.5 44 79.5
Oeu025695.1 Olea europaea HOM05D004476 ORTHO05D002200 3.0e-12 75.5 43 81.4
Hund06695 Selenicereus undatus HOM05D004476 ORTHO05D002200 3.0e-12 75.5 42 83.3
Ca_02141_v3 Cicer arietinum L. HOM05D004476 ORTHO05D002200 4.0e-12 75.1 42 85.7
SGA_v2.0_scaffold69G23243 Striga asiatica HOM05D004476 ORTHO05D002200 4.0e-12 75.1 43 86.0
TPR.G32576 Trifolium pratense HOM05D004476 ORTHO05D002200 4.0e-12 75.1 42 85.7
TAR383G0891 Trochodendron aralioides HOM05D004476 ORTHO05D002200 4.0e-12 75.1 42 81.0
HPP92_010317 Vanilla planifolia HOM05D004476 ORTHO05D002200 4.0e-12 75.1 42 85.7
Medtr2g038550 Medicago truncatula HOM05D004476 ORTHO05D002200 5.2e-12 74.7 42 83.3
Oeu032540.1 Olea europaea HOM05D004476 ORTHO05D002200 5.2e-12 74.7 43 79.1
MELO3C017417.2 Cucumis melo HOM05D004476 ORTHO05D002200 6.8e-12 74.3 52 67.3
MD16G1242800 Malus domestica HOM05D004476 ORTHO05D002200 6.8e-12 74.3 42 85.7
Medtr4g126790 Medicago truncatula HOM05D004476 ORTHO05D002200 6.8e-12 74.3 40 87.5
Psat1g142560 Pisum sativum HOM05D004476 ORTHO05D002200 6.8e-12 74.3 42 85.7
Rhsim01G0068600 Rhododendron simsii HOM05D004476 ORTHO05D002200 6.8e-12 74.3 42 81.0
TPR.G31650 Trifolium pratense HOM05D004476 ORTHO05D002200 6.8e-12 74.3 40 87.5
TWI34G1740 Tripterygium wilfordii HOM05D004476 ORTHO05D002200 6.8e-12 74.3 42 83.3
A01p08310 Brassica napus HOM05D004476 ORTHO05D002200 8.8e-12 73.9 43 79.1
Duzib170G0172 Durio zibethinus HOM05D004476 ORTHO05D002200 8.8e-12 73.9 42 81.0
PSO063G1528 Papaver somniferum HOM05D004476 ORTHO05D002200 8.8e-12 73.9 42 78.6
PSO170G5845 Papaver somniferum HOM05D004476 ORTHO05D002200 8.8e-12 73.9 42 78.6
QL11p005289 Quercus lobata HOM05D004476 ORTHO05D002200 8.8e-12 73.9 42 83.3
THA.LOC104813499 Tarenaya hassleriana HOM05D004476 ORTHO05D002200 8.8e-12 73.9 42 83.3
MSTRG.10746 Avicennia marina HOM05D004476 ORTHO05D002200 1.2e-11 73.6 43 79.1
CSS0026677 Camellia sinensis var. sinensis HOM05D004476 ORTHO05D002200 1.2e-11 73.6 42 81.0
CsaV3_1G031980 Cucumis sativus L. HOM05D004476 ORTHO05D002200 1.2e-11 73.6 42 81.0
THA.LOC104803963 Tarenaya hassleriana HOM05D004476 ORTHO05D002200 1.2e-11 73.6 42 81.0
Ca_21269_v3 Cicer arietinum L. HOM05D004476 ORTHO05D002200 1.5e-11 73.2 40 85.0
Gohir.A08G080700 Gossypium hirsutum HOM05D004476 ORTHO05D002200 1.5e-11 73.2 42 78.6
Prupe.1G069900 Prunus persica HOM05D004476 ORTHO05D002200 1.5e-11 73.2 42 83.3
Gohir.D08G090800 Gossypium hirsutum HOM05D004476 ORTHO05D002200 2.0e-11 72.8 42 78.6
Gorai.004G096100 Gossypium raimondii HOM05D004476 ORTHO05D002200 2.0e-11 72.8 42 78.6
vmacro20569 Vaccinium macrocarpon HOM05D004476 ORTHO05D002200 2.0e-11 72.8 42 78.6
C01p09350 Brassica napus HOM05D004476 ORTHO05D002200 2.6e-11 72.4 42 78.6
BolC1t00923H Brassica oleracea HOM05D004476 ORTHO05D002200 2.6e-11 72.4 42 78.6
MD13G1237400 Malus domestica HOM05D004476 ORTHO05D002200 2.6e-11 72.4 42 83.3
Psat4g013880 Pisum sativum HOM05D004476 ORTHO05D002200 2.6e-11 72.4 40 82.5
VMungo1309G0306 Vigna mungo HOM05D004476 ORTHO05D002200 2.6e-11 72.4 40 85.0
Ah.14g086030 Amaranthus hybridus HOM05D004476 ORTHO05D002200 3.4e-11 72.0 42 78.6
arahy.Tifrunner.gnm1.ann1.BX0J8Q Arachis hypogaea HOM05D004476 ORTHO05D002200 3.4e-11 72.0 40 85.0
arahy.Tifrunner.gnm1.ann1.FSCD1Z Arachis hypogaea HOM05D004476 ORTHO05D002200 3.4e-11 72.0 40 85.0
BraA01t00779Z Brassica rapa HOM05D004476 ORTHO05D002200 3.4e-11 72.0 43 76.7
AL3G48970 Arabidopsis lyrata HOM05D004476 ORTHO05D002200 7.5e-11 70.9 42 76.2
Carub.0003s3357 Capsella rubella HOM05D004476 ORTHO05D002200 7.5e-11 70.9 42 76.2
CARHR109800 Cardamine hirsuta HOM05D004476 ORTHO05D002200 7.5e-11 70.9 42 76.2
Thhalv10022925m.g Eutrema salsugineum HOM05D004476 ORTHO05D002200 7.5e-11 70.9 42 76.2
Nn8g40538 Nelumbo nucifera HOM05D004476 ORTHO05D002200 7.5e-11 70.9 42 76.2
Sp3g32720 Schrenkiella parvula HOM05D004476 ORTHO05D002200 7.5e-11 70.9 42 76.2
Sc14g0003140 Simmondsia chinensis HOM05D004476 ORTHO05D002200 7.5e-11 70.9 42 76.2
THA.LOC104817767 Tarenaya hassleriana HOM05D004476 ORTHO05D002200 7.5e-11 70.9 42 78.6
BolC9t54358H Brassica oleracea HOM05D004476 ORTHO05D002200 9.8e-11 70.5 45 71.1
PGR142G0686 Punica granatum HOM05D004476 ORTHO05D002200 9.8e-11 70.5 42 78.6
SGA_v2.0_scaffold66G22434 Striga asiatica HOM05D004476 ORTHO05D002200 9.8e-11 70.5 43 79.1
Glyma.15G168600 Glycine max HOM05D004476 ORTHO05D002200 1.3e-10 70.1 40 85.0
Lj6g0012515 Lotus japonicus HOM05D004476 ORTHO05D002200 1.3e-10 70.1 42 83.3
Phvul.009G233600 Phaseolus vulgaris HOM05D004476 ORTHO05D002200 1.3e-10 70.1 40 85.0
Sed0005515 Sechium edule HOM05D004476 ORTHO05D002200 1.3e-10 70.1 42 76.2
BcaB07g31613 Brassica carinata HOM05D004476 ORTHO05D002200 1.7e-10 69.7 42 73.8
BcaC04g22858 Brassica carinata HOM05D004476 ORTHO05D002200 1.7e-10 69.7 42 73.8
A09p12330 Brassica napus HOM05D004476 ORTHO05D002200 1.7e-10 69.7 42 73.8
C09p14540 Brassica napus HOM05D004476 ORTHO05D002200 1.7e-10 69.7 42 73.8
BraA09t36877Z Brassica rapa HOM05D004476 ORTHO05D002200 1.7e-10 69.7 42 73.8
Glyma.09G062200 Glycine max HOM05D004476 ORTHO05D002200 1.7e-10 69.7 40 82.5
HanXRQChr05g0142171 Helianthus annuus HOM05D004476 ORTHO05D002200 1.7e-10 69.7 47 72.3
AT2G19350 Arabidopsis thaliana HOM05D004476 ORTHO05D002200 2.2e-10 69.3 42 73.8
Sed0012081 Sechium edule HOM05D004476 ORTHO05D002200 2.8e-10 68.9 42 73.8
BcaB03g16723 Brassica carinata HOM05D004476 ORTHO05D002200 3.7e-10 68.6 42 71.4
BcaC06g36566 Brassica carinata HOM05D004476 ORTHO05D002200 3.7e-10 68.6 42 71.4
A07p01390 Brassica napus HOM05D004476 ORTHO05D002200 3.7e-10 68.6 42 71.4
C07p02850 Brassica napus HOM05D004476 ORTHO05D002200 3.7e-10 68.6 42 71.4
BolC7t40682H Brassica oleracea HOM05D004476 ORTHO05D002200 3.7e-10 68.6 42 71.4
BraA07t27934Z Brassica rapa HOM05D004476 ORTHO05D002200 3.7e-10 68.6 42 71.4
Duzib168G2374 Durio zibethinus HOM05D004476 ORTHO05D002200 3.7e-10 68.6 42 76.2
SalBow1G0556 Salvia bowleyana HOM05D004476 ORTHO05D002200 3.7e-10 68.6 43 74.4
Hma1.2p1_1219F.1_g267870 Hydrangea macrophylla HOM05D004476 ORTHO05D002200 4.8e-10 68.2 42 71.4
PGSC0003DMG400018747 Solanum tuberosum HOM05D004476 ORTHO05D002200 1.1e-09 67.0 54 64.8
Lsat_1_v5_gn_8_68841 Lactuca sativa HOM05D004476 ORTHO05D002200 1.4e-09 66.6 44 70.5
Sopen07g003040 Solanum pennellii HOM05D004476 ORTHO05D002200 1.4e-09 66.6 54 63.0
HPP92_021983 Vanilla planifolia HOM05D004476 ORTHO05D002200 1.8e-09 66.2 43 67.4
Glyma.13G102400 Glycine max HOM05D004476 ORTHO05D002200 3.1e-09 65.5 40 75.0
Gohir.A05G345854 Gossypium hirsutum HOM05D004476 ORTHO05D002200 3.1e-09 65.5 40 72.5
Gohir.D04G085200 Gossypium hirsutum HOM05D004476 ORTHO05D002200 3.1e-09 65.5 40 72.5
Gorai.012G095200 Gossypium raimondii HOM05D004476 ORTHO05D002200 3.1e-09 65.5 40 72.5
RcHm_v2.0_Chr2g0106271 Rosa chinensis HOM05D004476 ORTHO05D002200 4.1e-09 65.1 39 82.1
RcHm_v2.0_Chr4g0391941 Rosa chinensis HOM05D004476 ORTHO05D002200 5.4e-09 64.7 37 83.8
Glyma.17G056600 Glycine max HOM05D004476 ORTHO05D002200 9.1e-09 63.9 40 75.0
ATR0580G349 Amborella trichopoda HOM05D004476 ORTHO05D002200 1.6e-08 63.2 42 76.2
DCAR_014680 Daucus carota HOM05D004476 ORTHO05D002200 1.6e-08 63.2 43 69.8
Nitab4.5_0000957g0040 Nicotiana tabacum HOM05D004476 ORTHO05D002200 1.6e-08 63.2 42 71.4
Nitab4.5_0010128g0020 Nicotiana tabacum HOM05D004476 ORTHO05D002200 3.5e-08 62.0 42 69.0
RcHm_v2.0_Chr3g0494811 Rosa chinensis HOM05D004476 ORTHO05D002200 3.5e-08 62.0 38 73.7
Hma1.2p1_0571F.1_g180790 Hydrangea macrophylla HOM05D004476 ORTHO05D002200 4.5e-08 61.6 43 69.8
Lj2g0014857 Lotus japonicus HOM05D004476 ORTHO05D002200 7.7e-08 60.8 40 72.5
DCAR_017994 Daucus carota HOM05D004476 ORTHO05D002200 1.0e-07 60.5 45 66.7
Phvul.003G157700 Phaseolus vulgaris HOM05D004476 ORTHO05D002200 2.9e-07 58.9 40 67.5
Lj2g0010276 Lotus japonicus HOM05D004476 ORTHO05D002200 3.8e-07 58.5 40 67.5
Peaxi162Scf01558g00013 Petunia axillaris HOM05D004476 ORTHO05D002200 5.0e-07 58.2 43 67.4
CAN.G1495.9 Capsicum annuum HOM05D004476 ORTHO05D002200 1.1e-06 57.0 43 69.8
Lj4g0004777 Lotus japonicus HOM05D004476 ORTHO05D002200 1.1e-06 57.0 39 69.2
Nitab4.5_0005445g0030 Nicotiana tabacum HOM05D004476 ORTHO05D002200 2.5e-06 55.8 42 64.3
SMO348G0029 Selaginella moellendorffii HOM05D004476 ORTHO05D002200 7.2e-06 54.3 43 58.1


User provided reference genes

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