Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24684 Corylus avellana HOM05D007808 ORTHO05D009895 4.9e-157 557.8 283 100.0
QL09p041160 Quercus lobata HOM05D007808 ORTHO05D009895 1.4e-103 380.2 245 78.0
Duzib138G1393 Durio zibethinus HOM05D007808 ORTHO05D009895 1.0e-82 310.8 247 64.8
Gorai.001G180500 Gossypium raimondii HOM05D007808 ORTHO05D009895 3.7e-80 302.4 247 61.5
COL.COLO4_10584 Corchorus olitorius HOM05D007808 ORTHO05D009895 4.9e-80 302.0 247 62.3
Sabra14G0143900 Salix brachista HOM05D007808 ORTHO05D009895 4.6e-78 295.4 261 58.2
Thecc.01G251900 Theobroma cacao HOM05D007808 ORTHO05D009895 4.6e-78 295.4 247 62.3
Gohir.D07G157600 Gossypium hirsutum HOM05D007808 ORTHO05D009895 6.0e-78 295.0 247 60.3
Potri.014G192200 Populus trichocarpa HOM05D007808 ORTHO05D009895 3.9e-77 292.4 247 61.1
Gohir.A07G151000 Gossypium hirsutum HOM05D007808 ORTHO05D009895 4.3e-76 288.9 247 58.7
Prupe.8G216500 Prunus persica HOM05D007808 ORTHO05D009895 5.6e-76 288.5 253 62.1
Cpa.g.sc87.15 Carica papaya HOM05D007808 ORTHO05D009895 7.3e-76 288.1 242 62.0
Atru.chr5.1818 Acer truncatum HOM05D007808 ORTHO05D009895 1.6e-75 287.0 247 61.5
CSS0046569 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 1.1e-74 284.3 248 60.5
CANSAT01G0990 Cannabis sativa HOM05D007808 ORTHO05D009895 1.4e-74 283.9 246 61.0
CSS0017675 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 4.0e-74 282.3 248 60.1
RcHm_v2.0_Chr6g0286881 Rosa chinensis HOM05D007808 ORTHO05D009895 2.0e-73 280.0 253 59.3
FAN27G2486 Fragaria x ananassa HOM05D007808 ORTHO05D009895 2.6e-73 279.6 253 59.3
FvH4_2g20710 Fragaria vesca HOM05D007808 ORTHO05D009895 2.2e-72 276.6 253 58.5
FAN20G2653 Fragaria x ananassa HOM05D007808 ORTHO05D009895 2.4e-71 273.1 253 58.1
TAR633G0330 Trochodendron aralioides HOM05D007808 ORTHO05D009895 1.6e-70 270.4 268 56.3
Actinidia37545 Actinidia chinensis HOM05D007808 ORTHO05D009895 7.8e-70 268.1 246 57.7
FAN15G3261 Fragaria x ananassa HOM05D007808 ORTHO05D009895 5.0e-69 265.4 253 56.9
Lj2C1144T6 Lonicera japonica HOM05D007808 ORTHO05D009895 1.1e-68 264.2 244 54.9
Ciclev10020041m.g Citrus clementina HOM05D007808 ORTHO05D009895 1.9e-68 263.5 246 56.1
Manes.13G040600 Manihot esculenta HOM05D007808 ORTHO05D009895 1.9e-68 263.5 246 58.5
TWI18G1304 Tripterygium wilfordii HOM05D007808 ORTHO05D009895 3.3e-68 262.7 244 57.4
GSVIVG01028406001 Vitis vinifera HOM05D007808 ORTHO05D009895 2.3e-66 256.5 233 56.7
Hma1.2p1_0273F.1_g109280 Hydrangea macrophylla HOM05D007808 ORTHO05D009895 1.2e-65 254.2 249 55.8
FAN24G0750 Fragaria x ananassa HOM05D007808 ORTHO05D009895 6.4e-64 248.4 235 58.7
Lsat_1_v5_gn_8_92100 Lactuca sativa HOM05D007808 ORTHO05D009895 5.1e-61 238.8 243 53.9
Nn1g02938 Nelumbo nucifera HOM05D007808 ORTHO05D009895 9.5e-60 234.6 284 47.5
HanXRQChr04g0111341 Helianthus annuus HOM05D007808 ORTHO05D009895 1.2e-59 234.2 236 53.4
PGR031G1809 Punica granatum HOM05D007808 ORTHO05D009895 6.2e-59 231.9 244 51.2
Gorai.002G091900 Gossypium raimondii HOM05D007808 ORTHO05D009895 5.2e-58 228.8 242 52.5
Aqoxy5G00155 Aquilegia oxysepala HOM05D007808 ORTHO05D009895 2.9e-56 223.0 226 51.3
MBI10_g30718_MAGBIO Magnolia biondii HOM05D007808 ORTHO05D009895 2.7e-54 216.5 271 45.0
PSO832G1361 Papaver somniferum HOM05D007808 ORTHO05D009895 3.5e-54 216.1 224 49.6
DCAR_018515 Daucus carota HOM05D007808 ORTHO05D009895 1.0e-53 214.5 243 47.7
Nitab4.5_0010039g0030 Nicotiana tabacum HOM05D007808 ORTHO05D009895 2.8e-51 206.5 242 44.2
ATR0736G152 Amborella trichopoda HOM05D007808 ORTHO05D009895 3.1e-50 203.0 252 44.4
Peaxi162Scf00415g00913 Petunia axillaris HOM05D007808 ORTHO05D009895 5.8e-49 198.7 236 44.5
Solyc09g072860.2 Solanum lycopersicum HOM05D007808 ORTHO05D009895 2.2e-48 196.8 240 44.2
Sopen09g028660 Solanum pennellii HOM05D007808 ORTHO05D009895 1.1e-47 194.5 241 44.8
Migut.D00468 Erythranthe guttata HOM05D007808 ORTHO05D009895 6.0e-46 188.7 231 43.3
Cc01_g17900 Coffea canephora HOM05D007808 ORTHO05D009895 3.0e-45 186.4 228 44.7
SalBow4G3111 Salvia bowleyana HOM05D007808 ORTHO05D009895 4.3e-44 182.6 225 41.3
Oeu039657.1 Olea europaea HOM05D007808 ORTHO05D009895 6.9e-42 175.3 237 42.6
CAN.G1395.2 Capsicum annuum HOM05D007808 ORTHO05D009895 6.4e-40 168.7 223 42.6
THA.LOC104801132 Tarenaya hassleriana HOM05D007808 ORTHO05D009895 2.7e-38 163.3 237 40.1
HPP92_025831 Vanilla planifolia HOM05D007808 ORTHO05D009895 2.7e-38 163.3 254 38.6
CiPaw.04G189400 Carya illinoinensis HOM05D007808 ORTHO05D009895 3.9e-37 159.5 92 81.5
CARHR179280 Cardamine hirsuta HOM05D007808 ORTHO05D009895 2.5e-36 156.8 224 39.7
AT5G44010 Arabidopsis thaliana HOM05D007808 ORTHO05D009895 7.4e-36 155.2 130 56.9
AL8G16070 Arabidopsis lyrata HOM05D007808 ORTHO05D009895 9.6e-36 154.8 252 37.7
Carub.0008s0453 Capsella rubella HOM05D007808 ORTHO05D009895 1.4e-34 151.0 224 39.7
A09p20750 Brassica napus HOM05D007808 ORTHO05D009895 5.3e-34 149.1 130 53.8
BraA09t37679Z Brassica rapa HOM05D007808 ORTHO05D009895 5.3e-34 149.1 130 53.8
BcaC04g21876 Brassica carinata HOM05D007808 ORTHO05D009895 6.9e-34 148.7 138 50.7
C09p26260 Brassica napus HOM05D007808 ORTHO05D009895 6.9e-34 148.7 138 50.7
BolC9t55528H Brassica oleracea HOM05D007808 ORTHO05D009895 6.9e-34 148.7 138 50.7
Nitab4.5_0000845g0040 Nicotiana tabacum HOM05D007808 ORTHO05D009895 2.0e-33 147.1 242 34.3
BcaB07g30982 Brassica carinata HOM05D007808 ORTHO05D009895 5.8e-33 145.6 130 54.6
Gohir.D11G218200 Gossypium hirsutum HOM05D007808 ORTHO05D009895 4.2e-31 139.4 177 45.8
Os02g0814600 Oryza sativa ssp. japonica HOM05D007808 ORTHO05D009895 6.0e-30 135.6 229 35.8
ECA236G2323 Erigeron canadensis HOM05D000728 ORTHO05D001586 2.3e-29 133.7 198 40.4
PSO764G0215 Papaver somniferum HOM05D007808 ORTHO05D009895 2.5e-28 130.2 90 65.6
Sc05g0003060 Simmondsia chinensis HOM05D007808 ORTHO05D009895 9.6e-28 128.3 187 43.3
Zm00001eb191560 Zea mays HOM05D007808 ORTHO05D009895 1.3e-27 127.9 157 40.8
SGA_v2.0_scaffold1G00644 Striga asiatica HOM05D007808 ORTHO05D009895 2.8e-27 126.7 231 32.0
Eucgr.A01321 Eucalyptus grandis HOM05D007808 ORTHO05D009895 4.3e-20 102.8 139 43.2
FAN27G0174 Fragaria x ananassa HOM05D007808 ORTHO05D009895 3.7e-19 99.8 69 65.2
CDE02G3651 Ceratophyllum demersum HOM05D007808 ORTHO05D009895 6.3e-19 99.0 188 33.0
PGSC0003DMG400003825 Solanum tuberosum HOM05D007808 ORTHO05D009895 1.4e-15 87.8 55 61.8
Pp3c1_42330 Physcomitrium patens HOM05D007808 ORTHO05D009895 7.4e-12 75.5 113 34.5
AagrBONN_evm.TU.Sc2ySwM_117.2846 Anthoceros agrestis HOM05D007808 ORTHO05D009895 1.3e-11 74.7 121 30.6
Thhalv10003421m.g Eutrema salsugineum HOM05D007808 ORTHO05D009895 2.8e-11 73.6 130 35.4
BcaC04g21877 Brassica carinata HOM05D007808 ORTHO05D009895 5.9e-09 65.9 78 42.3
SEGI_27571 Sequoiadendron giganteum HOM05D007808 ORTHO05D009895 1.7e-08 64.3 168 26.8


User provided reference genes

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