Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24585 Corylus avellana HOM05D000200 ORTHO05D025043 6.8e-143 510.8 279 100.0
Cfa002391 Carpinus fangiana HOM05D000200 ORTHO05D000262 1.7e-40 170.6 121 81.0
MD10G1188400 Malus domestica HOM05D000200 ORTHO05D000262 1.0e-37 161.4 198 53.0
MD05G1201700 Malus domestica HOM05D000200 ORTHO05D000262 1.1e-36 157.9 198 52.5
QL09p037649 Quercus lobata HOM05D000200 ORTHO05D000262 2.5e-36 156.8 242 51.7
Prupe.8G228100 Prunus persica HOM05D000200 ORTHO05D000262 1.5e-33 147.5 185 54.1
Sabra02G0033500 Salix brachista HOM05D000200 ORTHO05D000262 4.4e-33 146.0 185 54.6
FAN15G1287 Fragaria x ananassa HOM05D000200 ORTHO05D000262 5.7e-33 145.6 194 49.5
RcHm_v2.0_Chr6g0288911 Rosa chinensis HOM05D000200 ORTHO05D000262 7.5e-33 145.2 194 50.0
ClCG09G008090 Citrullus lanatus HOM05D000200 ORTHO05D000262 2.9e-32 143.3 202 47.5
MELO3C012738.2 Cucumis melo HOM05D000200 ORTHO05D000262 2.9e-32 143.3 201 48.3
FvH4_2g22050 Fragaria vesca HOM05D000200 ORTHO05D000262 2.9e-32 143.3 194 49.0
FAN24G0764 Fragaria x ananassa HOM05D000200 ORTHO05D000262 3.7e-32 142.9 194 49.0
Lalb_Chr21g0306181 Lupinus albus HOM05D000200 ORTHO05D000262 8.3e-32 141.7 282 41.5
arahy.Tifrunner.gnm1.ann1.Q4RYVU Arachis hypogaea HOM05D000200 ORTHO05D000262 1.8e-31 140.6 181 51.9
FAN20G1012 Fragaria x ananassa HOM05D000200 ORTHO05D000262 4.1e-31 139.4 194 48.5
arahy.Tifrunner.gnm1.ann1.8K5TVB Arachis hypogaea HOM05D000200 ORTHO05D000262 2.7e-30 136.7 176 51.7
CsaV3_7G026980 Cucumis sativus L. HOM05D000200 ORTHO05D000262 4.6e-30 136.0 202 47.0
PGR119G0535 Punica granatum HOM05D000200 ORTHO05D000262 5.9e-30 135.6 199 50.3
Duzib138G1862 Durio zibethinus HOM05D000200 ORTHO05D000262 1.0e-29 134.8 145 60.0
MSTRG.17482 Avicennia marina HOM05D000200 ORTHO05D000262 3.3e-28 129.8 204 47.1
Medtr1g070280 Medicago truncatula HOM05D000200 ORTHO05D000262 7.3e-28 128.6 157 55.4
Carub.0005s2501 Capsella rubella HOM05D000200 ORTHO05D000262 8.0e-27 125.2 190 51.6
SGA_v2.0_scaffold98G29337 Striga asiatica HOM05D000200 ORTHO05D000262 5.2e-26 122.5 205 45.4
TWI12G0133 Tripterygium wilfordii HOM05D000200 ORTHO05D000262 2.6e-25 120.2 275 38.5
vmacro02640 Vaccinium macrocarpon HOM05D000200 ORTHO05D000262 4.4e-25 119.4 182 50.0
Eucgr.B01521 Eucalyptus grandis HOM05D000200 ORTHO05D000262 5.8e-25 119.0 200 48.0
Peaxi162Scf01530g00045 Petunia axillaris HOM05D000200 ORTHO05D000262 1.7e-24 117.5 181 46.4
Cc01_g18570 Coffea canephora HOM05D000200 ORTHO05D000262 2.2e-24 117.1 207 43.5
Thecc.01G263100 Theobroma cacao HOM05D000200 ORTHO05D000262 2.9e-24 116.7 194 46.4
CANSAT01G0409 Cannabis sativa HOM05D000200 ORTHO05D000262 4.9e-24 115.9 250 40.4
BraA04t15996Z Brassica rapa HOM05D000200 ORTHO05D000262 1.1e-23 114.8 172 50.6
Sed0003379 Sechium edule HOM05D000200 ORTHO05D000262 1.1e-23 114.8 268 35.8
Atru.chr5.1629 Acer truncatum HOM05D000200 ORTHO05D000262 1.4e-23 114.4 195 47.2
Migut.N02193 Erythranthe guttata HOM05D000200 ORTHO05D000262 1.4e-23 114.4 186 44.1
Rhsim13G0032100 Rhododendron simsii HOM05D000200 ORTHO05D000262 4.1e-23 112.8 127 57.5
THA.LOC104802247 Tarenaya hassleriana HOM05D000200 ORTHO05D000262 5.4e-23 112.5 206 45.6
SalBow6G2632 Salvia bowleyana HOM05D000200 ORTHO05D000262 1.2e-22 111.3 183 46.4
SalBow6G3108 Salvia bowleyana HOM05D000200 ORTHO05D000262 1.2e-22 111.3 183 46.4
Ciclev10024066m.g Citrus clementina HOM05D000200 ORTHO05D000262 2.7e-22 110.2 316 34.5
Ah.11g049840 Amaranthus hybridus HOM05D000200 ORTHO05D000262 1.0e-21 108.2 200 44.5
AUR62011905 Chenopodium quinoa HOM05D000200 ORTHO05D000262 1.3e-21 107.8 192 43.8
GSVIVG01028290001 Vitis vinifera HOM05D000200 ORTHO05D000262 1.3e-21 107.8 191 42.4
AL5G39850 Arabidopsis lyrata HOM05D000200 ORTHO05D000262 6.6e-21 105.5 190 46.8
Gohir.D08G207400 Gossypium hirsutum HOM05D000200 ORTHO05D000262 1.5e-20 104.4 202 43.6
Gorai.004G219700 Gossypium raimondii HOM05D000200 ORTHO05D000262 2.5e-20 103.6 207 42.5
Nitab4.5_0001044g0160 Nicotiana tabacum HOM05D000200 ORTHO05D000262 4.3e-20 102.8 169 45.6
Thhalv10006411m.g Eutrema salsugineum HOM05D000200 ORTHO05D000262 5.6e-20 102.4 189 47.1
A04p02700 Brassica napus HOM05D000200 ORTHO05D000262 7.3e-20 102.1 158 50.0
Sp5g04560 Schrenkiella parvula HOM05D000200 ORTHO05D000262 9.5e-20 101.7 189 46.0
BcaB02g08274 Brassica carinata HOM05D000200 ORTHO05D000262 2.1e-19 100.5 157 51.6
BcaC08g44902 Brassica carinata HOM05D000200 ORTHO05D000262 2.8e-19 100.1 186 46.8
C06p25220 Brassica napus HOM05D000200 ORTHO05D000262 2.8e-19 100.1 186 46.8
BolC6t37681H Brassica oleracea HOM05D000200 ORTHO05D000262 2.8e-19 100.1 186 46.8
unitig_37.g12600 Utricularia gibba HOM05D000200 ORTHO05D000262 2.8e-19 100.1 293 37.5
DCAR_007338 Daucus carota HOM05D000200 ORTHO05D000262 3.6e-19 99.8 130 51.5
Gohir.A08G189000 Gossypium hirsutum HOM05D000200 ORTHO05D000262 6.2e-19 99.0 203 40.4
A07p23950 Brassica napus HOM05D000200 ORTHO05D000262 3.1e-18 96.7 186 45.7
BcaB02g07546 Brassica carinata HOM05D000200 ORTHO05D000262 4.0e-18 96.3 189 45.5
TPR.G9045 Trifolium pratense HOM05D000200 ORTHO05D000262 4.0e-18 96.3 294 34.4
BraA07t30046Z Brassica rapa HOM05D000200 ORTHO05D000262 5.2e-18 95.9 186 45.7
AUR62024746 Chenopodium quinoa HOM05D000200 ORTHO05D000262 6.8e-18 95.5 192 41.1
Aqoxy5G00293 Aquilegia oxysepala HOM05D000200 ORTHO05D000262 1.5e-17 94.4 171 45.6
Aa31LG10G12880 Aethionema arabicum HOM05D000200 ORTHO05D000262 5.8e-17 92.4 167 46.7
Potri.002G041800 Populus trichocarpa HOM05D000200 ORTHO05D000262 7.5e-17 92.0 185 41.6
Solyc06g083960.3 Solanum lycopersicum HOM05D000200 ORTHO05D000262 7.5e-17 92.0 202 37.6
CAN.G771.21 Capsicum annuum HOM05D000200 ORTHO05D000262 9.9e-17 91.7 196 37.8
AT3G58160 Arabidopsis thaliana HOM05D000200 ORTHO05D000262 1.3e-16 91.3 170 46.5
CARHR168530 Cardamine hirsuta HOM05D000200 ORTHO05D000262 2.2e-16 90.5 147 49.7
Sopen06g035340 Solanum pennellii HOM05D000200 ORTHO05D000262 8.3e-16 88.6 230 32.6
Glyma.10G034400 Glycine max HOM05D000200 ORTHO05D000262 1.1e-15 88.2 155 41.9
Oeu028667.2 Olea europaea HOM05D000200 ORTHO05D000262 3.0e-13 80.1 245 34.7
BolC4t24982H Brassica oleracea HOM05D000200 ORTHO05D000262 3.9e-13 79.7 111 53.2
ECA248G1400 Erigeron canadensis HOM05D000200 ORTHO05D000262 3.9e-13 79.7 254 33.1
FAN27G1705 Fragaria x ananassa HOM05D000200 ORTHO05D025043 2.8e-11 73.6 89 51.7
AUR62004888 Chenopodium quinoa HOM05D000200 ORTHO05D000262 6.2e-11 72.4 245 27.3
Hund09584 Selenicereus undatus HOM05D000200 ORTHO05D000262 8.1e-11 72.0 99 47.5
Ca_09697_v3 Cicer arietinum L. HOM05D000200 ORTHO05D025043 1.4e-10 71.2 81 53.1
HanXRQChr01g0014301 Helianthus annuus HOM05D000200 ORTHO05D025043 1.5e-09 67.8 194 34.0
Sc05g0000820 Simmondsia chinensis HOM05D000200 ORTHO05D000262 1.5e-09 67.8 306 30.1
BcaC02g09993 Brassica carinata HOM05D000200 ORTHO05D000262 3.4e-09 66.6 97 52.6
C04p34240 Brassica napus HOM05D000200 ORTHO05D000262 3.4e-09 66.6 97 52.6
Cpa.g.sc50.51 Carica papaya HOM05D000200 ORTHO05D011844 3.4e-09 66.6 89 47.2
COL.COLO4_05592 Corchorus olitorius HOM05D000523 ORTHO05D000728 5.8e-09 65.9 129 43.4
ATR0051G032 Amborella trichopoda HOM05D000200 ORTHO05D000262 8.4e-08 62.0 131 36.6
Psat6g055920 Pisum sativum HOM05D000200 ORTHO05D000262 8.4e-08 62.0 70 54.3
Phvul.007G195700 Phaseolus vulgaris HOM05D000200 ORTHO05D000262 1.1e-07 61.6 66 57.6
Manes.01G199400 Manihot esculenta HOM05D000200 ORTHO05D000262 1.4e-07 61.2 63 61.9
Glyma.13G120800 Glycine max HOM05D000200 ORTHO05D000262 1.9e-07 60.8 144 36.8
Lj5g0022163 Lotus japonicus HOM05D000200 ORTHO05D000262 2.4e-07 60.5 66 56.1
DCAR_012528 Daucus carota HOM05D000200 ORTHO05D000262 3.2e-07 60.1 106 37.7
Nitab4.5_0002081g0110 Nicotiana tabacum HOM05D000200 ORTHO05D011844 2.7e-06 57.0 79 49.4
TAR406G0004 Trochodendron aralioides HOM05D000200 ORTHO05D011844 2.7e-06 57.0 127 40.2
SGA_v2.0_scaffold1G00583 Striga asiatica HOM05D000200 ORTHO05D000262 6.0e-06 55.8 139 33.1


User provided reference genes

Program Settings