Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 4.7e-177 624.4 308 100.0
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 5.6e-138 494.6 308 80.8
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 5.4e-133 478.0 308 79.5
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 8.1e-129 464.2 313 73.8
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 1.2e-127 460.3 313 73.5
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 1.6e-124 449.9 314 71.3
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 9.5e-122 440.7 311 70.1
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 3.6e-121 438.7 313 70.0
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 4.7e-121 438.3 311 68.8
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 6.2e-121 438.0 312 68.9
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 6.2e-121 438.0 291 73.2
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.1e-120 437.2 318 67.6
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 1.8e-120 436.4 307 70.0
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 5.2e-120 434.9 313 70.9
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 2.6e-119 432.6 311 68.8
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 3.4e-119 432.2 289 72.0
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 4.4e-119 431.8 311 68.5
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 2.2e-118 429.5 255 80.0
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 2.9e-118 429.1 313 67.7
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 6.4e-118 427.9 311 69.5
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 6.4e-118 427.9 294 71.8
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 8.4e-118 427.6 255 79.6
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 1.9e-117 426.4 314 70.7
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 7.1e-117 424.5 311 70.1
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 3.5e-116 422.2 255 79.2
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 6.6e-115 417.9 295 68.1
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 2.5e-114 416.0 295 67.8
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 1.6e-113 413.3 295 68.8
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 2.8e-113 412.5 307 65.5
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 3.6e-113 412.1 294 67.3
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 6.9e-112 407.9 330 63.9
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 6.9e-112 407.9 330 63.9
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 1.5e-111 406.8 232 81.9
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 1.5e-111 406.8 232 81.9
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 2.6e-111 406.0 256 75.0
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 3.4e-111 405.6 251 76.1
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 7.6e-111 404.4 311 64.0
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.7e-110 403.3 299 66.2
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 2.9e-110 402.5 255 74.1
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 4.9e-110 401.7 258 72.9
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 4.9e-110 401.7 311 66.6
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 6.4e-110 401.4 246 75.2
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 3.2e-109 399.1 248 74.6
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 4.2e-109 398.7 252 74.2
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 5.4e-109 398.3 313 63.6
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 7.1e-109 397.9 262 70.2
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 7.1e-109 397.9 288 66.7
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 9.3e-109 397.5 255 72.5
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 9.3e-109 397.5 255 72.2
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 1.2e-108 397.1 258 72.1
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 1.2e-108 397.1 258 72.1
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 1.6e-108 396.7 259 71.4
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 1.6e-108 396.7 312 65.1
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 4.6e-108 395.2 324 63.0
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 7.8e-108 394.4 311 64.0
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 1.3e-107 393.7 311 64.0
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.7e-107 393.3 249 73.1
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 1.7e-107 393.3 317 63.1
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 3.9e-107 392.1 312 64.1
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 5.1e-107 391.7 312 64.4
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 6.6e-107 391.3 281 67.6
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 9.6e-106 387.5 255 70.6
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 9.6e-106 387.5 295 65.1
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 1.6e-105 386.7 266 70.7
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 2.8e-105 386.0 232 78.4
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 6.2e-105 384.8 312 62.5
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 1.4e-104 383.6 248 71.4
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 1.8e-104 383.3 258 70.5
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 3.1e-104 382.5 309 61.5
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 1.2e-103 380.6 256 70.3
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 2.6e-103 379.4 308 62.0
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 5.8e-103 378.3 249 71.1
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 7.6e-103 377.9 308 62.0
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 8.4e-102 374.4 294 64.3
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 1.9e-101 373.2 252 69.0
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 2.4e-101 372.9 309 60.5
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 2.7e-100 369.4 277 65.3
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 1.0e-99 367.5 264 65.5
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 1.0e-99 367.5 272 68.4
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 1.1e-98 364.0 271 67.9
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 3.3e-98 362.5 256 67.6
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 9.6e-98 360.9 314 61.8
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 4.8e-97 358.6 304 61.5
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 5.3e-96 355.1 230 73.5
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 5.8e-95 351.7 253 68.4
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 4.2e-93 345.5 263 62.0
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 2.7e-92 342.8 256 65.6
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 5.1e-91 338.6 311 55.0
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 1.6e-89 333.6 290 59.0
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 6.9e-88 328.2 249 63.5
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 3.5e-84 315.8 312 55.1
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 1.6e-81 307.0 248 62.5
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 6.3e-81 305.1 246 60.6
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 4.6e-76 288.9 296 52.7
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 6.1e-76 288.5 258 57.4
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 1.4e-75 287.3 263 57.4
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 6.7e-75 285.0 297 51.5
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 5.5e-69 265.4 181 67.4
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 4.7e-68 262.3 173 67.1
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 7.4e-66 255.0 205 59.0
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 4.8e-65 252.3 177 70.1
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 6.3e-65 251.9 151 74.8
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 2.9e-54 216.5 171 61.4
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 1.2e-50 204.5 287 40.1
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 1.0e-46 191.4 245 43.3
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 1.9e-45 187.2 257 42.0
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 2.4e-40 170.2 157 54.8
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 2.3e-38 163.7 152 57.2
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 6.6e-38 162.2 158 55.1
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 8.9e-35 151.8 165 49.7
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 1.0e-30 138.3 99 67.7
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 8.6e-30 135.2 85 74.1
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 7.3e-29 132.1 94 69.1
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 8.0e-28 128.6 98 64.3
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 3.7e-25 119.8 178 39.3
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 8.3e-25 118.6 125 49.6
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 2.4e-24 117.1 119 52.1
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 1.6e-23 114.4 148 41.9
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 1.3e-22 111.3 140 45.0
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 5.6e-21 105.9 65 73.8
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.6e-20 104.4 58 82.8
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 3.6e-20 103.2 155 43.2
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 1.6e-15 87.8 202 32.2
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 4.7e-12 76.3 120 39.2
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 5.2e-11 72.8 116 39.7
SHI31647 Sapria himalayana HOM05D006249 ORTHO05D007643 5.8e-10 69.3 61 55.7
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 9.9e-10 68.6 116 36.2
SHI49503 Sapria himalayana HOM05D000624 ORTHO05D000495 2.9e-09 67.0 50 72.0
SHI27267 Sapria himalayana HOM05D000624 ORTHO05D000495 1.1e-08 65.1 71 50.7
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 5.4e-08 62.8 56 48.2
SHI41947 Sapria himalayana HOM05D000624 ORTHO05D000495 7.1e-08 62.4 50 68.0
SHI34501 Sapria himalayana HOM05D006249 ORTHO05D007643 9.2e-08 62.0 93 41.9
SHI43714 Sapria himalayana HOM05D000624 ORTHO05D007643 9.2e-08 62.0 49 65.3
SHI45616 Sapria himalayana HOM05D000624 ORTHO05D000495 9.2e-08 62.0 50 68.0
SHI54291 Sapria himalayana HOM05D006249 ORTHO05D007643 1.2e-07 61.6 53 58.5
SHI49364 Sapria himalayana HOM05D000624 ORTHO05D000495 2.7e-07 60.5 50 66.0
SEGI_29111 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 2.7e-07 60.5 41 68.3
arahy.Tifrunner.gnm1.ann1.GWHG3I Arachis hypogaea HOM05D006249 ORTHO05D007643 1.0e-06 58.5 101 34.7


User provided reference genes

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