Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24522 Corylus avellana HOM05D003696 ORTHO05D005158 1.2e-247 859.4 429 100.0
CiPaw.03G256800 Carya illinoinensis HOM05D003696 ORTHO05D005158 5.8e-202 707.6 399 87.7
Rhsim13G0030400 Rhododendron simsii HOM05D003696 ORTHO05D005158 6.2e-196 687.6 438 79.2
Thecc.01G268800 Theobroma cacao HOM05D003696 ORTHO05D005158 6.2e-196 687.6 399 84.2
Prupe.8G233000 Prunus persica HOM05D003696 ORTHO05D005158 8.2e-196 687.2 399 84.0
MD03G1255900 Malus domestica HOM05D003696 ORTHO05D005158 1.1e-195 686.8 399 83.7
Potri.002G046000 Populus trichocarpa HOM05D003696 ORTHO05D005158 1.8e-195 686.0 399 84.0
FAN15G1876 Fragaria x ananassa HOM05D003696 ORTHO05D005158 2.6e-194 682.2 399 83.7
Lalb_Chr01g0019921 Lupinus albus HOM05D003696 ORTHO05D005158 2.6e-194 682.2 399 83.7
FAN27G2942 Fragaria x ananassa HOM05D003696 ORTHO05D005158 3.4e-194 681.8 399 83.7
Lalb_Chr06g0162701 Lupinus albus HOM05D003696 ORTHO05D005158 3.4e-194 681.8 399 83.2
RcHm_v2.0_Chr6g0289661 Rosa chinensis HOM05D003696 ORTHO05D005158 3.4e-194 681.8 399 83.5
Atru.chr5.1552 Acer truncatum HOM05D003696 ORTHO05D005158 4.5e-194 681.4 399 83.7
Duzib138G0212 Durio zibethinus HOM05D003696 ORTHO05D005158 1.7e-193 679.5 427 79.6
GSVIVG01000711001 Vitis vinifera HOM05D003696 ORTHO05D005158 2.2e-193 679.1 399 84.7
Eucgr.B01485 Eucalyptus grandis HOM05D003696 ORTHO05D005158 2.9e-193 678.7 399 84.2
TWI18G1352 Tripterygium wilfordii HOM05D003696 ORTHO05D005158 3.8e-193 678.3 399 82.5
Glyma.02G143000 Glycine max HOM05D003696 ORTHO05D005158 4.9e-193 677.9 399 83.0
Manes.01G202600 Manihot esculenta HOM05D003696 ORTHO05D005158 4.9e-193 677.9 399 83.2
Ciclev10019381m.g Citrus clementina HOM05D003696 ORTHO05D005158 1.1e-192 676.8 399 82.5
FvH4_2g22730 Fragaria vesca HOM05D003696 ORTHO05D005158 1.1e-192 676.8 399 83.5
Duzib133G0262 Durio zibethinus HOM05D003696 ORTHO05D005158 1.4e-192 676.4 399 83.0
Gorai.001G242400 Gossypium raimondii HOM05D003696 ORTHO05D005158 1.4e-192 676.4 399 82.2
Potri.005G217300 Populus trichocarpa HOM05D003696 ORTHO05D005158 1.4e-192 676.4 399 83.2
Lj2C1161G6 Lonicera japonica HOM05D003696 ORTHO05D005158 1.9e-192 676.0 399 84.0
arahy.Tifrunner.gnm1.ann1.PHA4NK Arachis hypogaea HOM05D003696 ORTHO05D005158 4.2e-192 674.9 446 75.6
Gohir.A07G208500 Gossypium hirsutum HOM05D003696 ORTHO05D005158 5.5e-192 674.5 399 82.0
Phvul.007G176200 Phaseolus vulgaris HOM05D003696 ORTHO05D005158 5.5e-192 674.5 399 81.7
Hma1.2p1_0760F.1_g214220 Hydrangea macrophylla HOM05D003696 ORTHO05D005158 7.1e-192 674.1 388 84.8
Gohir.D07G214400 Gossypium hirsutum HOM05D003696 ORTHO05D005158 1.2e-191 673.3 399 82.2
Glyma.10G031400 Glycine max HOM05D003696 ORTHO05D005158 1.6e-191 672.9 399 82.2
TAR362G0028 Trochodendron aralioides HOM05D003696 ORTHO05D005158 4.6e-191 671.4 399 83.5
MD11G1276500 Malus domestica HOM05D003696 ORTHO05D005158 1.8e-190 669.5 399 82.0
Cc01_g18910 Coffea canephora HOM05D003696 ORTHO05D005158 5.1e-190 667.9 399 81.2
Lj1g0000304 Lotus japonicus HOM05D003696 ORTHO05D005158 4.3e-189 664.8 399 79.9
Actinidia21150 Actinidia chinensis HOM05D003696 ORTHO05D005158 9.7e-189 663.7 399 82.0
arahy.Tifrunner.gnm1.ann1.R5NTZZ Arachis hypogaea HOM05D003696 ORTHO05D005158 9.7e-189 663.7 399 80.5
CsaV3_7G027640 Cucumis sativus L. HOM05D003696 ORTHO05D005158 1.3e-188 663.3 399 79.9
vmacro02623 Vaccinium macrocarpon HOM05D003696 ORTHO05D005158 3.7e-188 661.8 399 82.2
PGR119G0829 Punica granatum HOM05D003696 ORTHO05D005158 6.3e-188 661.0 399 81.5
Dinv22488 Davidia involucrata HOM05D003696 ORTHO05D005158 1.1e-187 660.2 399 83.2
Peaxi162Scf00049g02229 Petunia axillaris HOM05D003696 ORTHO05D005158 1.8e-187 659.4 398 81.7
CANSAT25G2047 Cannabis sativa HOM05D003696 ORTHO05D005158 2.4e-187 659.1 399 80.7
Sabra02G0037000 Salix brachista HOM05D003696 ORTHO05D005158 3.1e-187 658.7 425 77.9
Lj5g0013019 Lotus japonicus HOM05D003696 ORTHO05D005158 6.9e-187 657.5 399 80.2
Nn1g02525 Nelumbo nucifera HOM05D003696 ORTHO05D005158 6.9e-187 657.5 399 80.7
Gohir.A11G126500 Gossypium hirsutum HOM05D003696 ORTHO05D005158 9.0e-187 657.1 399 79.4
Rhsim01G0270500 Rhododendron simsii HOM05D003696 ORTHO05D005158 1.5e-186 656.4 399 81.7
FAN20G1369 Fragaria x ananassa HOM05D003696 ORTHO05D005158 2.0e-186 656.0 423 78.5
Gohir.D11G132000 Gossypium hirsutum HOM05D003696 ORTHO05D005158 3.4e-186 655.2 399 79.2
Solyc09g065810.3 Solanum lycopersicum HOM05D003696 ORTHO05D005158 7.7e-186 654.1 389 83.0
Sopen09g027590 Solanum pennellii HOM05D003696 ORTHO05D005158 7.7e-186 654.1 389 83.0
Manes.05G083700 Manihot esculenta HOM05D003696 ORTHO05D005158 1.0e-185 653.7 399 80.5
Gorai.007G141200 Gossypium raimondii HOM05D003696 ORTHO05D005158 1.3e-185 653.3 399 78.9
Sed0021830 Sechium edule HOM05D003696 ORTHO05D005158 2.2e-185 652.5 399 78.4
MELO3C015756.2 Cucumis melo HOM05D003696 ORTHO05D005158 3.8e-185 651.7 393 79.6
Aqoxy2G03500 Aquilegia oxysepala HOM05D003696 ORTHO05D005158 1.9e-184 649.4 399 80.2
Ca_08640_v3 Cicer arietinum L. HOM05D003696 ORTHO05D005158 4.2e-184 648.3 399 78.7
Aa31LG5G20830 Aethionema arabicum HOM05D003696 ORTHO05D005158 9.4e-184 647.1 423 74.5
TWI75G1072 Tripterygium wilfordii HOM05D003696 ORTHO05D005158 7.9e-183 644.0 399 78.9
CAN.G1488.3 Capsicum annuum HOM05D003696 ORTHO05D005158 2.3e-182 642.5 383 81.5
Migut.D00342 Erythranthe guttata HOM05D003696 ORTHO05D005158 1.1e-181 640.2 389 79.9
TPR.G19113 Trifolium pratense HOM05D003696 ORTHO05D005158 2.5e-181 639.0 399 77.4
Sp4g21230 Schrenkiella parvula HOM05D003696 ORTHO05D005158 3.3e-181 638.6 399 76.4
Aqoxy5G00373 Aquilegia oxysepala HOM05D003696 ORTHO05D005158 4.3e-181 638.3 399 78.4
AUR62011954 Chenopodium quinoa HOM05D003696 ORTHO05D005158 4.3e-181 638.3 399 78.2
Sopen06g035470 Solanum pennellii HOM05D003696 ORTHO05D005158 5.7e-181 637.9 389 79.7
THA.LOC104824177 Tarenaya hassleriana HOM05D003696 ORTHO05D005158 1.3e-180 636.7 399 76.9
PSO832G3077 Papaver somniferum HOM05D003696 ORTHO05D005158 2.8e-180 635.6 399 79.4
SalBow4G1850 Salvia bowleyana HOM05D003696 ORTHO05D005158 2.8e-180 635.6 389 79.7
Thhalv10016535m.g Eutrema salsugineum HOM05D003696 ORTHO05D005158 3.7e-180 635.2 399 75.9
Solyc06g084080.4 Solanum lycopersicum HOM05D003696 ORTHO05D005158 3.7e-180 635.2 389 79.7
Lsat_1_v5_gn_5_186821 Lactuca sativa HOM05D003696 ORTHO05D005158 4.8e-180 634.8 413 76.0
ATR0665G388 Amborella trichopoda HOM05D003696 ORTHO05D005158 8.2e-180 634.0 396 78.3
PSO210G6865 Papaver somniferum HOM05D003696 ORTHO05D005158 2.4e-179 632.5 399 78.9
vmacro14880 Vaccinium macrocarpon HOM05D003696 ORTHO05D005158 2.4e-179 632.5 445 72.1
AT2G38840 Arabidopsis thaliana HOM05D003696 ORTHO05D005158 3.1e-179 632.1 399 75.7
THA.LOC104804694 Tarenaya hassleriana HOM05D003696 ORTHO05D005158 5.3e-179 631.3 399 76.2
MSTRG.18280 Avicennia marina HOM05D003696 ORTHO05D005158 6.9e-179 630.9 389 79.7
AL4G36150 Arabidopsis lyrata HOM05D003696 ORTHO05D005158 9.1e-179 630.6 399 75.7
Psat3g060760 Pisum sativum HOM05D003696 ORTHO05D005158 1.2e-178 630.2 399 76.7
ECA248G0710 Erigeron canadensis HOM05D003696 ORTHO05D005158 2.0e-178 629.4 399 77.7
QL12p042578 Quercus lobata HOM05D003696 ORTHO05D005158 2.0e-178 629.4 447 72.9
Carub.0004s2087 Capsella rubella HOM05D003696 ORTHO05D005158 3.4e-178 628.6 399 75.7
C03p25680 Brassica napus HOM05D003696 ORTHO05D005158 1.3e-177 626.7 399 75.2
BcaC01g05515 Brassica carinata HOM05D003696 ORTHO05D005158 1.7e-177 626.3 399 74.9
BolC3t14954H Brassica oleracea HOM05D003696 ORTHO05D005158 1.7e-177 626.3 399 74.9
A03p21680 Brassica napus HOM05D003696 ORTHO05D005158 2.2e-177 625.9 399 74.7
BraA03t11403Z Brassica rapa HOM05D003696 ORTHO05D005158 2.2e-177 625.9 399 74.7
Medtr1g070940 Medicago truncatula HOM05D003696 ORTHO05D005158 3.2e-176 622.1 399 75.7
BcaB01g03621 Brassica carinata HOM05D003696 ORTHO05D005158 4.2e-176 621.7 399 74.2
CARHR133570 Cardamine hirsuta HOM05D003696 ORTHO05D005158 4.2e-176 621.7 392 75.5
HanXRQChr01g0006891 Helianthus annuus HOM05D003696 ORTHO05D005158 1.2e-175 620.2 387 78.0
Nitab4.5_0003053g0040 Nicotiana tabacum HOM05D003696 ORTHO05D005158 1.2e-175 620.2 413 75.8
A04p29630 Brassica napus HOM05D003696 ORTHO05D005158 1.6e-175 619.8 399 74.4
arahy.Tifrunner.gnm1.ann1.RW1UC5 Arachis hypogaea HOM05D003696 ORTHO05D005158 3.6e-175 618.6 461 68.1
BcaC02g07441 Brassica carinata HOM05D003696 ORTHO05D005158 3.6e-175 618.6 399 74.4
C04p66920 Brassica napus HOM05D003696 ORTHO05D005158 3.6e-175 618.6 399 74.4
HPP92_012304 Vanilla planifolia HOM05D003696 ORTHO05D005158 4.7e-175 618.2 400 73.8
BraA04t18429Z Brassica rapa HOM05D003696 ORTHO05D005158 1.0e-174 617.1 399 74.2
unitig_22.g5276 Utricularia gibba HOM05D003696 ORTHO05D005158 1.0e-174 617.1 389 77.4
Nitab4.5_0000187g0140 Nicotiana tabacum HOM05D003696 ORTHO05D005158 1.8e-174 616.3 413 75.5
arahy.Tifrunner.gnm1.ann1.YF2GLB Arachis hypogaea HOM05D003696 ORTHO05D005158 5.1e-174 614.8 424 71.7
BolC4t28193H Brassica oleracea HOM05D003696 ORTHO05D005158 1.5e-173 613.2 399 74.2
HanXRQChr06g0177911 Helianthus annuus HOM05D003696 ORTHO05D005158 2.6e-173 612.5 398 76.1
TAR365G0099 Trochodendron aralioides HOM05D003696 ORTHO05D005158 1.7e-172 609.8 352 85.8
Peaxi162Scf01311g00020 Petunia axillaris HOM05D003696 ORTHO05D005158 8.2e-172 607.4 414 74.2
CDE07G1976 Ceratophyllum demersum HOM05D003696 ORTHO05D005158 1.4e-171 606.7 399 74.2
CDE04G3179 Ceratophyllum demersum HOM05D003696 ORTHO05D005158 2.4e-171 605.9 398 74.6
EL10Ac5g10463 Beta vulgaris HOM05D003696 ORTHO05D005158 9.1e-171 604.0 399 74.7
VMungo0720G2873 Vigna mungo HOM05D003696 ORTHO05D005158 2.5e-168 595.9 352 83.5
TPR.G39048 Trifolium pratense HOM05D003696 ORTHO05D005158 5.5e-168 594.7 407 73.0
AUR62032267 Chenopodium quinoa HOM05D003696 ORTHO05D005158 6.1e-167 591.3 399 73.9
Oeu011521.4 Olea europaea HOM05D003696 ORTHO05D005158 6.1e-167 591.3 352 82.7
CAN.G771.13 Capsicum annuum HOM05D003696 ORTHO05D005158 3.9e-166 588.6 387 74.2
Os03g0796800 Oryza sativa ssp. japonica HOM05D003696 ORTHO05D005158 9.7e-165 583.9 403 70.7
Zm00001eb060800 Zea mays HOM05D003696 ORTHO05D005158 4.8e-164 581.6 400 70.2
Actinidia04660 Actinidia chinensis HOM05D003696 ORTHO05D005158 1.4e-163 580.1 341 82.4
CSS0026583 Camellia sinensis var. sinensis HOM05D003696 ORTHO05D005158 7.7e-162 574.3 351 81.2
SHI09972 Sapria himalayana HOM05D003696 ORTHO05D005158 1.7e-161 573.2 376 75.3
Medtr7g096020 Medicago truncatula HOM05D003696 ORTHO05D005158 3.8e-161 572.0 352 80.7
FAN24G1113 Fragaria x ananassa HOM05D003696 ORTHO05D005158 5.0e-161 571.6 341 82.7
ClCG09G007480 Citrullus lanatus HOM05D003696 ORTHO05D005158 8.5e-161 570.9 395 73.4
DCAR_002690 Daucus carota HOM05D003696 ORTHO05D005158 4.4e-157 558.5 353 78.5
Nitab4.5_0004899g0140 Nicotiana tabacum HOM05D003696 ORTHO05D005158 3.7e-156 555.4 446 65.5
Os07g0181700 Oryza sativa ssp. japonica HOM05D003696 ORTHO05D005158 1.4e-155 553.5 399 65.4
Zm00001eb301480 Zea mays HOM05D003696 ORTHO05D005158 7.0e-155 551.2 400 66.0
SGA_v2.0_scaffold138G35289 Striga asiatica HOM05D003696 ORTHO05D005158 2.2e-153 546.2 375 72.3
PGSC0003DMG400020060 Solanum tuberosum HOM05D003696 ORTHO05D005158 3.0e-150 535.8 331 78.9
Oeu025782.1 Olea europaea HOM05D003696 ORTHO05D005158 1.3e-145 520.4 388 67.0
Psat6g058040 Pisum sativum HOM05D003696 ORTHO05D005158 4.2e-144 515.4 320 79.1
COL.COLO4_06092 Corchorus olitorius HOM05D003696 ORTHO05D005158 4.4e-141 505.4 352 73.0
Nitab4.5_0001044g0030 Nicotiana tabacum HOM05D003696 ORTHO05D005158 6.8e-134 481.5 400 63.8
Dinv34560 Davidia involucrata HOM05D003696 ORTHO05D005158 2.0e-125 453.4 270 85.2
Cpa.g.sc52.106 Carica papaya HOM05D003696 ORTHO05D005158 1.9e-123 446.8 262 84.4
SMO358G0641 Selaginella moellendorffii HOM05D003696 ORTHO05D005158 7.8e-122 441.4 375 56.0
Mapoly0093s0035 Marchantia polymorpha HOM05D003696 ORTHO05D005158 2.8e-119 433.0 396 52.5
Sed0026747 Sechium edule HOM05D003696 ORTHO05D005158 4.0e-118 429.1 270 77.0
Pp3c22_17680 Physcomitrium patens HOM05D003696 ORTHO05D005158 2.0e-117 426.8 385 55.8
SEGI_18155 Sequoiadendron giganteum HOM05D003696 ORTHO05D005158 4.9e-116 422.2 338 61.8
Sc05g0001070 Simmondsia chinensis HOM05D003696 ORTHO05D005158 6.8e-110 401.7 262 73.7
Zm00001eb060850 Zea mays HOM05D003696 ORTHO05D005158 4.2e-107 392.5 352 58.0
DCAR_018442 Daucus carota HOM05D003696 ORTHO05D005158 9.2e-107 391.3 292 68.2
CBR_g8307 Chara braunii HOM05D003696 ORTHO05D005158 4.9e-100 369.0 383 46.7
Actinidia24931 Actinidia chinensis HOM05D003696 ORTHO05D005158 2.4e-99 366.7 225 79.6
Ah.11g050060 Amaranthus hybridus HOM05D003696 ORTHO05D005158 2.0e-93 347.1 225 76.9
Hund22719 Selenicereus undatus HOM05D003696 ORTHO05D005158 5.8e-93 345.5 209 77.0
Ah.02g111370 Amaranthus hybridus HOM05D003696 ORTHO05D005158 6.9e-86 322.0 227 69.6
Hund22720 Selenicereus undatus HOM05D003696 ORTHO05D005158 5.0e-76 289.3 184 77.7
FAN12G4236 Fragaria x ananassa HOM05D003696 ORTHO05D005158 6.5e-76 288.9 263 54.8
Zm00001eb060900 Zea mays HOM05D003696 ORTHO05D020192 9.7e-72 275.0 183 72.7
Zm00001eb212950 Zea mays HOM05D003696 ORTHO05D005158 3.1e-70 270.0 190 67.9
HanXRQChr04g0094761 Helianthus annuus HOM05D003696 ORTHO05D005158 3.7e-63 246.5 160 75.6
MCO03G033 Micromonas commoda HOM05D003696 ORTHO05D005158 3.8e-60 236.5 392 33.9
Cre16.g663050 Chlamydomonas reinhardtii HOM05D003696 ORTHO05D005158 1.1e-59 235.0 365 35.9
arahy.Tifrunner.gnm1.ann1.1H3032 Arachis hypogaea HOM05D003696 ORTHO05D005158 2.3e-57 227.3 218 58.7
arahy.Tifrunner.gnm1.ann1.VHR0A7 Arachis hypogaea HOM05D001154 ORTHO05D010892 4.5e-53 213.0 124 83.9
Duzib211G0248 Durio zibethinus HOM05D003696 ORTHO05D020192 6.5e-44 182.6 110 81.8
Cpa.g.sc52.105 Carica papaya HOM05D003696 ORTHO05D020192 2.6e-40 170.6 96 81.2
arahy.Tifrunner.gnm1.ann1.Y88CQU Arachis hypogaea HOM05D003696 ORTHO05D005158 1.7e-36 157.9 140 60.7
HanXRQChr11g0343431 Helianthus annuus HOM05D003696 ORTHO05D005158 4.5e-29 133.3 104 61.5
C04p68080 Brassica napus HOM05D003696 ORTHO05D020192 1.4e-17 95.1 59 64.4
BolC4t28313H Brassica oleracea HOM05D003696 ORTHO05D020192 1.4e-17 95.1 59 64.4
C04p68090 Brassica napus HOM05D025610 ORTHO05D016804 1.5e-16 91.7 114 44.7
BolC4t28314H Brassica oleracea HOM05D025610 ORTHO05D016804 1.5e-16 91.7 114 44.7
BraA04t18522Z Brassica rapa HOM05D003696 ORTHO05D020192 1.5e-16 91.7 59 62.7
C04p68070 Brassica napus HOM05D003696 ORTHO05D016804 2.0e-16 91.3 67 65.7
BolC4t28312H Brassica oleracea HOM05D003696 ORTHO05D016804 2.0e-16 91.3 67 65.7
HanXRQChr04g0098101 Helianthus annuus HOM05D003696 ORTHO05D005158 1.3e-15 88.6 48 87.5
BraA04t18521Z Brassica rapa HOM05D000956 ORTHO05D016804 5.4e-14 83.2 55 69.1
HanXRQChr09g0243441 Helianthus annuus HOM05D003696 ORTHO05D005158 5.6e-11 73.2 158 34.8
BcaC02g07333 Brassica carinata HOM05D001127 ORTHO05D016804 7.3e-11 72.8 45 71.1
arahy.Tifrunner.gnm1.ann1.IE214W Arachis hypogaea HOM05D001154 ORTHO05D010892 5.2e-09 66.6 34 79.4
BcaC02g07336 Brassica carinata HOM05D001127 ORTHO05D002230 6.8e-09 66.2 34 76.5
A06p28820 Brassica napus HOM05D003696 ORTHO05D016804 1.2e-08 65.5 44 65.9
BraA06t25826Z Brassica rapa HOM05D003696 ORTHO05D016804 1.2e-08 65.5 44 65.9
HanXRQChr03g0064341 Helianthus annuus HOM05D003696 ORTHO05D020192 2.0e-08 64.7 33 84.8
Pp3c12_11340 Physcomitrium patens HOM05D002538 ORTHO05D003162 1.4e-06 58.5 178 28.1
arahy.Tifrunner.gnm1.ann1.ER9TT4 Arachis hypogaea HOM05D038369 ORTHO05D010597 1.9e-06 58.2 51 58.8
Atru.chr10.1782 Acer truncatum HOM05D002538 ORTHO05D003162 2.4e-06 57.8 246 25.6


User provided reference genes

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