Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24495 Corylus avellana HOM05D006472 ORTHO05D008222 0.0e+00 1663.3 831 100.0
Cfa011860 Carpinus fangiana HOM05D006472 ORTHO05D008222 0.0e+00 1373.2 835 86.3
CiPaw.13G059900 Carya illinoinensis HOM05D006472 ORTHO05D008222 0.0e+00 1249.2 835 78.4
QL01p023614 Quercus lobata HOM05D006472 ORTHO05D008222 0.0e+00 1211.1 834 75.8
GSVIVG01024525001 Vitis vinifera HOM05D006472 ORTHO05D008222 0.0e+00 1139.0 835 71.5
TAR369G0765 Trochodendron aralioides HOM05D006472 ORTHO05D008222 0.0e+00 1117.1 830 69.4
Prupe.6G038300 Prunus persica HOM05D006472 ORTHO05D008222 0.0e+00 1114.4 835 69.8
Glyma.02G238400 Glycine max HOM05D006472 ORTHO05D008222 0.0e+00 1112.8 835 69.5
Phvul.008G243600 Phaseolus vulgaris HOM05D006472 ORTHO05D008222 0.0e+00 1105.5 835 68.9
Glyma.14G207300 Glycine max HOM05D006472 ORTHO05D008222 0.0e+00 1105.1 835 69.0
VMungo0647G2416 Vigna mungo HOM05D006472 ORTHO05D008222 0.0e+00 1098.2 834 68.5
CANSAT54G2825 Cannabis sativa HOM05D006472 ORTHO05D008222 0.0e+00 1091.3 835 68.4
MELO3C013696.2 Cucumis melo HOM05D006472 ORTHO05D008222 0.0e+00 1089.7 834 69.3
Nn5g26767 Nelumbo nucifera HOM05D006472 ORTHO05D008222 0.0e+00 1085.5 835 67.8
Lalb_Chr10g0103951 Lupinus albus HOM05D006472 ORTHO05D008222 0.0e+00 1083.9 836 67.6
Actinidia34511 Actinidia chinensis HOM05D006472 ORTHO05D008222 0.0e+00 1080.1 835 68.4
RcHm_v2.0_Chr5g0073921 Rosa chinensis HOM05D006472 ORTHO05D008222 0.0e+00 1079.7 837 67.1
CSS0014639 Camellia sinensis var. sinensis HOM05D006472 ORTHO05D008222 0.0e+00 1077.4 836 67.9
MD03G1047100 Malus domestica HOM05D006472 ORTHO05D008222 0.0e+00 1076.6 835 67.8
FvH4_3g41130 Fragaria vesca HOM05D006472 ORTHO05D008222 5.7e-312 1074.7 838 66.7
FAN11G3159 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.1e-311 1072.8 838 66.6
Dinv28760 Davidia involucrata HOM05D006472 ORTHO05D008222 2.3e-311 1072.0 808 69.6
Atru.chr10.2355 Acer truncatum HOM05D006472 ORTHO05D008222 6.8e-311 1070.5 835 67.2
FAN16G1417 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.9e-310 1068.9 838 66.3
FAN21G1719 Fragaria x ananassa HOM05D006472 ORTHO05D008222 2.5e-310 1068.5 838 66.1
Ca_05732_v3 Cicer arietinum L. HOM05D006472 ORTHO05D008222 6.9e-308 1060.4 839 66.0
LjContig00141g0008115 Lotus japonicus HOM05D006472 ORTHO05D008222 6.9e-308 1060.4 831 66.2
Manes.18G123800 Manihot esculenta HOM05D006472 ORTHO05D008222 5.8e-307 1057.4 835 66.8
Sabra19G0129200 Salix brachista HOM05D006472 ORTHO05D008222 2.2e-306 1055.4 838 67.2
Potri.019G133000 Populus trichocarpa HOM05D006472 ORTHO05D008222 9.3e-305 1050.0 838 66.5
Medtr5g075970 Medicago truncatula HOM05D006472 ORTHO05D008222 7.9e-304 1047.0 838 65.6
vmacro14657 Vaccinium macrocarpon HOM05D006472 ORTHO05D008222 4.3e-302 1041.2 835 66.0
Hma1.2p1_0170F.1_g075410 Hydrangea macrophylla HOM05D006472 ORTHO05D008222 2.4e-300 1035.4 835 66.3
FAN25G3237 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.5e-299 1032.7 838 64.7
Thecc.09G366100 Theobroma cacao HOM05D006472 ORTHO05D008222 3.8e-298 1028.1 841 65.6
TPR.G15403 Trifolium pratense HOM05D006472 ORTHO05D008222 2.7e-296 1021.9 828 64.6
Eucgr.J01848 Eucalyptus grandis HOM05D006472 ORTHO05D008222 4.6e-296 1021.1 834 64.5
EL10Ac8g20566 Beta vulgaris HOM05D006472 ORTHO05D008222 9.6e-294 1013.4 835 64.1
Rhsim01G0245200 Rhododendron simsii HOM05D006472 ORTHO05D008222 1.6e-293 1012.7 904 61.5
TWI31G0750 Tripterygium wilfordii HOM05D006472 ORTHO05D008222 1.4e-292 1009.6 838 65.2
Psat2g049480 Pisum sativum HOM05D006472 ORTHO05D008222 2.7e-288 995.3 837 63.4
AUR62039472 Chenopodium quinoa HOM05D006472 ORTHO05D008222 9.6e-286 986.9 835 63.1
Lj2C1106G3 Lonicera japonica HOM05D006472 ORTHO05D008222 1.6e-285 986.1 835 62.5
Sed0004215 Sechium edule HOM05D006472 ORTHO05D008222 1.4e-284 983.0 733 70.4
arahy.Tifrunner.gnm1.ann1.LP7W2Z Arachis hypogaea HOM05D006472 ORTHO05D008222 9.0e-284 980.3 831 63.3
PGR119G0508 Punica granatum HOM05D006472 ORTHO05D008222 3.4e-283 978.4 835 62.9
Duzib168G0790 Durio zibethinus HOM05D006472 ORTHO05D008222 1.7e-282 976.1 840 63.7
Solyc09g055340.4 Solanum lycopersicum HOM05D006472 ORTHO05D008222 1.7e-282 976.1 833 62.4
Gohir.D03G146000 Gossypium hirsutum HOM05D006472 ORTHO05D008222 3.8e-282 974.9 838 62.8
CDE07G0456 Ceratophyllum demersum HOM05D006472 ORTHO05D008222 5.0e-282 974.5 835 59.8
PSO339G5368 Papaver somniferum HOM05D006472 ORTHO05D008222 1.9e-281 972.6 833 61.9
PSO384G2469 Papaver somniferum HOM05D006472 ORTHO05D008222 1.9e-281 972.6 833 62.2
HanXRQChr11g0338241 Helianthus annuus HOM05D006472 ORTHO05D008222 1.2e-280 969.9 833 61.0
Gohir.A03G022700 Gossypium hirsutum HOM05D006472 ORTHO05D008222 9.7e-278 960.3 832 62.1
ECA248G1121 Erigeron canadensis HOM05D006472 ORTHO05D008222 2.8e-277 958.7 833 60.7
Lsat_1_v5_gn_5_176920 Lactuca sativa HOM05D006472 ORTHO05D008222 3.7e-277 958.4 833 60.3
arahy.Tifrunner.gnm1.ann1.9899SL Arachis hypogaea HOM05D006472 ORTHO05D008222 9.0e-276 953.7 835 62.0
COL.COLO4_08158 Corchorus olitorius HOM05D006472 ORTHO05D008222 9.0e-276 953.7 843 61.1
Aqoxy2G00669 Aquilegia oxysepala HOM05D006472 ORTHO05D008222 1.2e-275 953.4 835 60.0
Sopen09g017740 Solanum pennellii HOM05D006472 ORTHO05D008222 1.7e-274 949.5 813 62.1
Ah.09g233500 Amaranthus hybridus HOM05D006472 ORTHO05D008222 6.5e-274 947.6 833 60.9
THA.LOC104798389 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 1.4e-271 939.9 834 58.8
Migut.N00711 Erythranthe guttata HOM05D006472 ORTHO05D008222 8.5e-266 920.6 836 59.1
SGA_v2.0_scaffold120G33005 Striga asiatica HOM05D006472 ORTHO05D008222 1.9e-265 919.5 841 58.6
AL8G25600 Arabidopsis lyrata HOM05D006472 ORTHO05D008222 9.1e-260 900.6 835 56.8
Sp6g13540 Schrenkiella parvula HOM05D006472 ORTHO05D008222 1.7e-258 896.3 835 56.8
Sc11g0008920 Simmondsia chinensis HOM05D006472 ORTHO05D008222 5.0e-258 894.8 762 62.2
AT5G51340 Arabidopsis thaliana HOM05D006472 ORTHO05D008222 6.5e-258 894.4 836 56.5
A10p09080 Brassica napus HOM05D006472 ORTHO05D008222 4.2e-257 891.7 834 56.2
BcaB08g35491 Brassica carinata HOM05D006472 ORTHO05D008222 1.2e-256 890.2 832 55.9
BraA10t42993Z Brassica rapa HOM05D006472 ORTHO05D008222 1.2e-256 890.2 834 56.1
Aa31LG3G7830 Aethionema arabicum HOM05D006472 ORTHO05D008222 1.6e-256 889.8 831 56.1
BcaC04g20686 Brassica carinata HOM05D006472 ORTHO05D008222 4.7e-256 888.3 833 55.8
C09p40600 Brassica napus HOM05D006472 ORTHO05D008222 4.7e-256 888.3 833 55.8
BolC9t56942H Brassica oleracea HOM05D006472 ORTHO05D008222 4.7e-256 888.3 833 55.8
Carub.0008s1136 Capsella rubella HOM05D006472 ORTHO05D008222 1.0e-255 887.1 835 56.0
Thhalv10012792m.g Eutrema salsugineum HOM05D006472 ORTHO05D008222 3.0e-255 885.6 835 56.5
HPP92_024257 Vanilla planifolia HOM05D006472 ORTHO05D008222 1.0e-231 807.4 834 52.5
HPP92_024263 Vanilla planifolia HOM05D006472 ORTHO05D008222 1.4e-231 807.0 834 52.5
ATR1127G223 Amborella trichopoda HOM05D006472 ORTHO05D008222 1.8e-231 806.6 836 53.1
Medtr6g049450 Medicago truncatula HOM05D006472 ORTHO05D008222 2.6e-214 749.6 776 52.8
DCAR_012719 Daucus carota HOM05D006472 ORTHO05D008222 1.1e-207 727.6 695 57.4
Ciclev10000965m.g Citrus clementina HOM05D006472 ORTHO05D008222 1.8e-207 726.9 591 64.1
Zm00001eb193950 Zea mays HOM05D006472 ORTHO05D008222 9.0e-191 671.4 839 45.8
CsaV3_3G000010 Cucumis sativus L. HOM05D006472 ORTHO05D008222 5.1e-178 629.0 544 64.3
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 1.1e-177 627.9 779 47.2
Oeu034746.1 Olea europaea HOM05D006472 ORTHO05D008222 6.2e-176 622.1 577 58.9
SMO119G0519 Selaginella moellendorffii HOM05D006472 ORTHO05D008222 6.9e-175 618.6 791 45.5
Mapoly0020s0144 Marchantia polymorpha HOM05D006472 ORTHO05D008222 1.7e-173 614.0 777 45.7
Nitab4.5_0002030g0020 Nicotiana tabacum HOM05D006472 ORTHO05D008222 4.9e-173 612.5 706 50.3
Pp3c10_12710 Physcomitrium patens HOM05D006472 ORTHO05D008222 1.7e-165 587.4 783 43.3
Pp3c26_4960 Physcomitrium patens HOM05D006472 ORTHO05D008222 1.1e-164 584.7 783 43.3
THA.LOC104824615 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 1.5e-161 574.3 437 64.5
AUR62041830 Chenopodium quinoa HOM05D006472 ORTHO05D008222 1.8e-159 567.4 510 59.8
Peaxi162Scf00293g00816 Petunia axillaris HOM05D006472 ORTHO05D008222 1.3e-157 561.2 432 67.6
ClCG10G000020 Citrullus lanatus HOM05D006472 ORTHO05D008222 2.2e-152 543.9 380 72.4
THA.LOC104824654 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 1.0e-141 508.4 398 63.6
AagrBONN_evm.TU.Sc2ySwM_117.3516 Anthoceros agrestis HOM05D006472 ORTHO05D008222 1.6e-131 474.6 779 38.1
Cpa.g.sc2.260 Carica papaya HOM05D006472 ORTHO05D008222 1.6e-126 458.0 425 58.4
Cc01_g15530 Coffea canephora HOM05D006472 ORTHO05D008222 8.0e-123 445.7 311 69.5
ClCG10G000010 Citrullus lanatus HOM05D006472 ORTHO05D008222 1.8e-122 444.5 329 72.6
Nitab4.5_0000195g0150 Nicotiana tabacum HOM05D006472 ORTHO05D008222 1.7e-120 438.0 587 45.7
Cpa.g.sc2.261 Carica papaya HOM05D006472 ORTHO05D008222 1.5e-116 424.9 311 71.4
CBR_g46787 Chara braunii HOM05D006472 ORTHO05D008222 1.3e-112 411.8 771 33.7
CARHR264090 Cardamine hirsuta HOM05D006472 ORTHO05D008222 2.1e-107 394.4 295 67.8
Os04g0347600 Oryza sativa ssp. japonica HOM05D006472 ORTHO05D008222 2.6e-105 387.5 443 49.7
Nn5g26768 Nelumbo nucifera HOM05D006472 ORTHO05D008222 4.0e-98 363.6 228 79.8
Cc01_g15520 Coffea canephora HOM05D006472 ORTHO05D008222 1.5e-97 361.7 268 69.4
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 5.8e-97 359.8 281 66.5
Atru.chr10.2358 Acer truncatum HOM05D006472 ORTHO05D008222 2.8e-91 340.9 273 63.7
Nitab4.5_0001025g0010 Nicotiana tabacum HOM05D006472 ORTHO05D008222 2.6e-81 307.8 206 71.8
Haze_06065 Corylus avellana HOM05D000100 ORTHO05D000052 2.0e-73 281.6 148 93.2
Ciclev10004061m.g Citrus clementina HOM05D006472 ORTHO05D008222 1.9e-60 238.4 155 76.8
Gorai.003G153200 Gossypium raimondii HOM05D006472 ORTHO05D008222 1.1e-58 232.6 160 75.6
SEGI_25118 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 1.1e-44 186.0 142 63.4
MCO15G146 Micromonas commoda HOM05D006472 ORTHO05D008222 4.4e-28 131.0 807 24.3
Peaxi162Scf00293g00815 Petunia axillaris HOM05D006472 ORTHO05D008222 1.9e-23 115.5 104 57.7
SEGI_41332 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 2.7e-22 111.7 71 77.5
Lsat_1_v5_gn_5_131141 Lactuca sativa HOM05D006472 ORTHO05D008222 3.1e-18 98.2 69 68.1
Actinidia23826 Actinidia chinensis HOM05D006472 ORTHO05D008222 8.8e-13 80.1 66 66.7
Medtr5g078560 Medicago truncatula HOM05D006472 ORTHO05D008222 9.1e-10 70.1 44 72.7
Medtr6g051400 Medicago truncatula HOM05D006472 ORTHO05D008222 1.3e-08 66.2 50 58.0
Cre12.g532650 Chlamydomonas reinhardtii HOM05D006472 ORTHO05D008222 4.2e-07 61.2 142 32.4


User provided reference genes

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