Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 0.0e+00 2131.7 1077 100.0
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 0.0e+00 1909.8 1077 91.3
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 0.0e+00 1720.7 1076 81.7
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 0.0e+00 1694.5 1077 80.8
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1544.6 1078 73.9
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1537.7 1077 73.0
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 0.0e+00 1537.7 1078 72.8
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1535.4 1078 73.6
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 0.0e+00 1530.8 1078 73.0
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1529.6 1077 72.6
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 0.0e+00 1528.5 1078 72.9
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 0.0e+00 1519.6 1077 71.9
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1519.6 1078 72.4
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 0.0e+00 1519.6 1054 74.2
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1510.7 1071 72.7
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1507.7 1071 72.8
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 0.0e+00 1503.4 1077 71.8
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 0.0e+00 1503.4 1079 71.5
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 0.0e+00 1489.2 1080 71.9
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 0.0e+00 1480.7 1078 70.6
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 0.0e+00 1477.2 1110 69.1
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 0.0e+00 1476.1 1075 69.5
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 0.0e+00 1464.1 1078 69.9
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1456.8 1080 69.0
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 0.0e+00 1456.4 1052 71.0
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1451.4 1083 69.4
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 0.0e+00 1450.6 1078 69.8
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1440.2 1083 69.2
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1439.5 1066 69.6
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1429.1 1078 69.4
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 0.0e+00 1428.7 1077 68.1
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 0.0e+00 1426.8 1078 67.3
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1425.2 1078 69.0
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 0.0e+00 1412.9 1080 66.9
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 0.0e+00 1410.2 1080 67.4
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 0.0e+00 1407.9 1114 66.7
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 0.0e+00 1405.6 1080 66.7
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1400.6 1079 66.2
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1400.2 1079 66.4
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 0.0e+00 1384.8 1084 66.6
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1382.9 1073 66.5
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1379.4 1078 65.3
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 0.0e+00 1378.6 1078 65.7
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 0.0e+00 1361.3 1058 65.9
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 0.0e+00 1360.9 1077 65.1
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 0.0e+00 1360.9 1078 65.5
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 0.0e+00 1357.8 1078 65.2
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 0.0e+00 1335.1 1080 63.9
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 0.0e+00 1332.4 1080 64.1
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 0.0e+00 1328.2 1078 64.1
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 0.0e+00 1325.1 1077 63.0
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 0.0e+00 1322.4 1080 63.1
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 0.0e+00 1319.7 1079 63.5
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 0.0e+00 1317.0 1076 63.0
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 0.0e+00 1312.7 1080 62.2
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 0.0e+00 1306.2 1083 62.9
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 0.0e+00 1302.0 1082 62.1
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 0.0e+00 1300.4 1073 63.1
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 0.0e+00 1293.5 1081 61.8
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 0.0e+00 1292.7 1078 61.7
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1288.9 1080 60.8
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 0.0e+00 1285.4 1080 61.5
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 0.0e+00 1285.4 1080 61.4
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1273.5 1076 61.8
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 0.0e+00 1273.5 1078 61.3
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1273.1 1080 60.6
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1270.8 1080 60.7
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 0.0e+00 1269.6 1080 60.6
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1268.8 1080 60.6
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 0.0e+00 1268.8 1080 60.6
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1265.0 1076 61.2
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1260.0 1076 62.5
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 0.0e+00 1256.1 1089 60.1
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 0.0e+00 1248.4 1079 60.6
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 0.0e+00 1239.9 1083 60.9
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 0.0e+00 1238.8 1071 61.2
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1236.9 1072 61.2
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 0.0e+00 1234.9 838 74.8
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1216.1 1076 59.2
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 0.0e+00 1185.2 1076 58.6
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 0.0e+00 1176.0 837 72.3
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 0.0e+00 1154.8 1047 58.9
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 0.0e+00 1133.6 858 68.4
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 0.0e+00 1119.8 1081 56.2
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 6.4e-306 1054.3 1082 53.0
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 1.6e-304 1049.7 1085 52.4
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 1.3e-290 1003.4 757 67.5
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 1.6e-285 986.5 791 63.3
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 4.6e-280 968.4 656 74.7
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 4.5e-275 951.8 672 71.6
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 3.2e-273 945.7 1047 50.6
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 1.4e-244 850.5 1098 45.0
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 9.4e-241 837.8 1100 44.5
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 5.1e-239 832.0 810 54.1
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 1.7e-237 827.0 1057 45.3
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 2.3e-231 806.6 941 47.2
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 9.8e-222 774.6 553 70.3
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 1.1e-220 771.2 1072 43.2
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 8.0e-208 728.4 566 65.4
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 7.0e-204 715.3 588 63.8
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 1.2e-200 704.5 515 71.8
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 8.3e-197 691.8 460 75.9
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 5.1e-186 656.0 420 79.3
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 4.1e-180 636.3 590 59.2
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 1.0e-178 631.7 1111 37.4
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 5.1e-178 629.4 634 55.5
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 1.2e-174 618.2 515 61.0
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 1.0e-170 605.1 1089 36.0
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 3.9e-162 576.6 462 61.0
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 2.1e-160 570.9 515 57.7
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 2.9e-149 533.9 637 46.9
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 3.8e-149 533.5 1083 32.7
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 9.7e-121 439.1 530 48.1
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 2.2e-117 427.9 534 44.8
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 2.4e-111 407.9 266 77.4
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 7.0e-111 406.4 275 75.6
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 5.9e-110 403.3 1143 27.9
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 1.6e-107 395.2 330 61.5
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 1.9e-100 371.7 266 72.6
CAN.G3.43 Capsicum annuum HOM05D004875 ORTHO05D005598 1.0e-82 312.8 336 49.1
Nitab4.5_0005130g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 8.9e-82 309.7 321 49.5
Nitab4.5_0000002g0020 Nicotiana tabacum HOM05D004875 ORTHO05D005598 6.4e-80 303.5 322 49.1
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 3.5e-78 297.7 517 37.7
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 2.5e-60 238.4 421 41.1
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 1.9e-55 222.2 421 36.3
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 5.4e-55 220.7 421 36.1
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 9.0e-50 203.4 110 89.1
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 1.5e-44 186.0 195 55.4
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 1.5e-44 186.0 195 55.4
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 1.4e-42 179.5 793 26.0
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 9.0e-42 176.8 852 25.1
PSO339G3761 Papaver somniferum HOM05D004875 ORTHO05D005598 4.6e-38 164.5 475 30.5
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 1.8e-37 162.5 257 40.5
PSO170G5144 Papaver somniferum HOM05D004875 ORTHO05D005598 1.5e-36 159.5 471 29.7
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 7.4e-36 157.1 792 23.5
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 4.5e-33 147.9 421 31.1
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 7.6e-33 147.1 168 48.8
PSO384G1619 Papaver somniferum HOM05D004875 ORTHO05D005598 3.8e-32 144.8 345 32.5
Lsat_1_v5_gn_9_14740 Lactuca sativa HOM05D000378 ORTHO05D005598 4.3e-28 131.3 159 46.5
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 5.7e-28 131.0 143 55.2
SHI19215 Sapria himalayana HOM05D004875 ORTHO05D005598 1.6e-27 129.4 174 42.0
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 3.4e-25 121.7 151 51.7
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 4.2e-23 114.8 105 61.9
SHI19216 Sapria himalayana HOM05D004875 ORTHO05D005598 9.3e-23 113.6 71 74.6
BcaB03g16392 Brassica carinata HOM05D004875 ORTHO05D005598 8.7e-21 107.1 166 37.3
SMO117G0137 Selaginella moellendorffii HOM05D004875 ORTHO05D005598 3.7e-19 101.7 89 55.1
PSO170G3032 Papaver somniferum HOM05D004875 ORTHO05D005598 8.2e-19 100.5 217 35.9
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 2.4e-18 99.0 77 67.5
PSO170G5101 Papaver somniferum HOM05D004875 ORTHO05D005598 1.7e-16 92.8 439 23.5
SHI19218 Sapria himalayana HOM05D004875 ORTHO05D005598 6.1e-14 84.3 51 72.5
Oeu042861.1 Olea europaea HOM05D004875 ORTHO05D005598 3.3e-12 78.6 46 78.3
SEGI_36322 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 7.4e-12 77.4 49 71.4
BcaB06g26910 Brassica carinata HOM05D000375 ORTHO05D000240 1.8e-10 72.8 107 37.4
PGSC0003DMG400004010 Solanum tuberosum HOM05D004875 ORTHO05D005598 4.1e-10 71.6 76 51.3
Sabra19G0131700 Salix brachista HOM05D000080 ORTHO05D004954 1.1e-07 63.5 100 44.0


User provided reference genes

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