Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24336 Corylus avellana HOM05D005913 ORTHO05D007138 2.1e-192 675.6 359 100.0
Cfa011705 Carpinus fangiana HOM05D005913 ORTHO05D007138 2.2e-130 469.5 363 72.2
CiPaw.13G076700 Carya illinoinensis HOM05D005913 ORTHO05D007138 8.9e-95 351.3 352 56.8
QL05p072708 Quercus lobata HOM05D005913 ORTHO05D007138 3.9e-90 335.9 352 56.5
Prupe.6G056500 Prunus persica HOM05D005913 ORTHO05D007138 6.2e-80 302.0 355 53.8
MD11G1073200 Malus domestica HOM05D005913 ORTHO05D007138 7.5e-78 295.0 352 53.1
Nitab4.5_0000037g0040 Nicotiana tabacum HOM05D005913 ORTHO05D007138 6.4e-77 292.0 261 61.3
TWI31G0765 Tripterygium wilfordii HOM05D005913 ORTHO05D007138 1.4e-76 290.8 343 49.9
CSS0006724 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 2.7e-75 286.6 263 58.9
CSS0022052 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 2.7e-75 286.6 263 58.9
RcHm_v2.0_Chr5g0069871 Rosa chinensis HOM05D005913 ORTHO05D007138 7.8e-75 285.0 348 50.0
PGSC0003DMG400016288 Solanum tuberosum HOM05D005913 ORTHO05D007138 1.7e-74 283.9 260 59.2
PGSC0003DMG402011001 Solanum tuberosum HOM05D005913 ORTHO05D007138 3.9e-74 282.7 260 58.8
Sopen10g034140 Solanum pennellii HOM05D005913 ORTHO05D007138 1.1e-73 281.2 260 58.8
TAR633G1775 Trochodendron aralioides HOM05D005913 ORTHO05D007138 1.9e-73 280.4 346 47.7
Peaxi162Scf00228g00514 Petunia axillaris HOM05D000044 ORTHO05D007138 4.3e-73 279.3 252 60.3
Solyc10g084700.2 Solanum lycopersicum HOM05D005913 ORTHO05D007138 4.3e-73 279.3 260 58.5
Thecc.09G300200 Theobroma cacao HOM05D005913 ORTHO05D007138 4.3e-73 279.3 300 53.7
Hma1.2p1_1287F.1_g273300 Hydrangea macrophylla HOM05D005913 ORTHO05D007138 5.6e-73 278.9 268 59.0
Duzib150G0854 Durio zibethinus HOM05D005913 ORTHO05D007138 3.6e-72 276.2 264 57.6
Sed0020527 Sechium edule HOM05D005913 ORTHO05D007138 6.2e-72 275.4 351 48.1
Sc21g0006380 Simmondsia chinensis HOM05D005913 ORTHO05D007138 1.4e-71 274.2 266 57.9
GSVIVG01024730001 Vitis vinifera HOM05D005913 ORTHO05D007138 1.4e-71 274.2 262 59.2
Sc21g0006400 Simmondsia chinensis HOM05D005913 ORTHO05D007138 4.0e-71 272.7 266 57.9
Dinv28648 Davidia involucrata HOM05D005913 ORTHO05D007138 8.9e-71 271.6 354 47.5
Nn2g15825 Nelumbo nucifera HOM05D005913 ORTHO05D007138 1.2e-70 271.2 267 57.7
FAN11G0587 Fragaria x ananassa HOM05D005913 ORTHO05D007138 1.5e-70 270.8 348 49.4
CAN.G324.3 Capsicum annuum HOM05D005913 ORTHO05D007138 2.0e-70 270.4 259 56.0
Rhsim01G0236700 Rhododendron simsii HOM05D005913 ORTHO05D007138 3.4e-70 269.6 352 48.0
Dinv25093 Davidia involucrata HOM05D005913 ORTHO05D007138 4.4e-70 269.2 260 58.5
vmacro14595 Vaccinium macrocarpon HOM05D005913 ORTHO05D007138 5.8e-70 268.9 262 56.1
FvH4_3g38720 Fragaria vesca HOM05D005913 ORTHO05D007138 2.9e-69 266.5 348 48.0
CsaV3_6G016190 Cucumis sativus L. HOM05D005913 ORTHO05D007138 4.9e-69 265.8 355 46.8
Eucgr.J01039 Eucalyptus grandis HOM05D005913 ORTHO05D007138 1.1e-68 264.6 347 47.6
MELO3C025845.2 Cucumis melo HOM05D005913 ORTHO05D007138 1.9e-68 263.8 351 47.0
Oeu008301.1 Olea europaea HOM05D005913 ORTHO05D007138 2.4e-68 263.5 345 46.1
FAN25G2063 Fragaria x ananassa HOM05D005913 ORTHO05D007138 9.2e-68 261.5 348 48.3
FAN21G0630 Fragaria x ananassa HOM05D005913 ORTHO05D007138 1.2e-67 261.2 348 48.3
Lsat_1_v5_gn_9_20000 Lactuca sativa HOM05D005913 ORTHO05D007138 1.6e-67 260.8 259 54.4
QL01p038500 Quercus lobata HOM05D005913 ORTHO05D007138 1.3e-66 257.7 300 53.7
MSTRG.24154 Avicennia marina HOM05D005913 ORTHO05D007138 3.0e-66 256.5 259 56.0
CANSAT56G2716 Cannabis sativa HOM05D005913 ORTHO05D007138 3.9e-66 256.1 258 55.0
ECA247G1367 Erigeron canadensis HOM05D005913 ORTHO05D007138 5.1e-66 255.8 252 54.4
Cpa.g.sc112.8 Carica papaya HOM05D005913 ORTHO05D007138 6.6e-66 255.4 355 47.0
HanXRQChr16g0518331 Helianthus annuus HOM05D005913 ORTHO05D007138 1.1e-65 254.6 252 55.2
Lj3A585T46 Lonicera japonica HOM05D005913 ORTHO05D007138 1.9e-65 253.8 262 54.6
Cc01_g14290 Coffea canephora HOM05D005913 ORTHO05D007138 2.5e-65 253.4 250 58.4
FAN16G2194 Fragaria x ananassa HOM05D005913 ORTHO05D007138 2.8e-64 250.0 349 47.9
AUR62020144 Chenopodium quinoa HOM05D005913 ORTHO05D007138 4.8e-64 249.2 248 55.6
AUR62001638 Chenopodium quinoa HOM05D005913 ORTHO05D007138 1.4e-63 247.7 248 55.6
Lalb_Chr19g0128221 Lupinus albus HOM05D005913 ORTHO05D007138 5.3e-63 245.7 249 54.6
Hund09257 Selenicereus undatus HOM05D005913 ORTHO05D007138 3.4e-62 243.0 263 55.1
SGA_v2.0_scaffold25G11107 Striga asiatica HOM05D005913 ORTHO05D007138 3.4e-62 243.0 261 52.1
PGR044G1475 Punica granatum HOM05D005913 ORTHO05D007138 7.6e-62 241.9 253 53.4
Ciclev10029073m.g Citrus clementina HOM05D005913 ORTHO05D007138 3.8e-61 239.6 350 45.4
Migut.N03298 Erythranthe guttata HOM05D005913 ORTHO05D007138 6.4e-61 238.8 261 54.4
Gorai.013G259900 Gossypium raimondii HOM05D005913 ORTHO05D007138 6.4e-61 238.8 241 55.2
arahy.Tifrunner.gnm1.ann1.6RYY2X Arachis hypogaea HOM05D005913 ORTHO05D007138 1.9e-60 237.3 248 54.8
Gohir.D13G228900 Gossypium hirsutum HOM05D005913 ORTHO05D007138 1.9e-60 237.3 241 54.8
TAR369G0609 Trochodendron aralioides HOM05D005913 ORTHO05D007138 1.9e-60 237.3 239 54.8
Psat3g002480 Pisum sativum HOM05D005913 ORTHO05D007138 2.4e-60 236.9 350 43.4
Gohir.A13G224200 Gossypium hirsutum HOM05D005913 ORTHO05D007138 1.2e-59 234.6 240 55.0
DCAR_012499 Daucus carota HOM05D005913 ORTHO05D007138 6.0e-59 232.3 260 51.9
Glyma.05G235600 Glycine max HOM05D005913 ORTHO05D007138 6.0e-59 232.3 256 52.3
DCAR_002129 Daucus carota HOM05D005913 ORTHO05D007138 1.0e-58 231.5 269 50.9
Manes.10G106300 Manihot esculenta HOM05D005913 ORTHO05D007138 3.0e-58 229.9 347 43.5
Peaxi162Scf00384g00045 Petunia axillaris HOM05D005913 ORTHO05D007138 3.0e-58 229.9 245 53.1
PSO675G7356 Papaver somniferum HOM05D005913 ORTHO05D007138 1.5e-57 227.6 248 52.0
Medtr7g117410 Medicago truncatula HOM05D005913 ORTHO05D007138 1.9e-57 227.3 240 53.8
Sabra06G0131300 Salix brachista HOM05D005913 ORTHO05D007138 3.3e-57 226.5 259 51.7
ATR0681G105 Amborella trichopoda HOM05D005913 ORTHO05D007138 5.6e-57 225.7 254 52.4
Ca_09509_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 1.6e-56 224.2 353 43.3
Ca_30058_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 1.6e-56 224.2 353 43.3
LjContig00155g0009730 Lotus japonicus HOM05D005913 ORTHO05D007138 2.1e-56 223.8 240 54.2
PSO801G0017 Papaver somniferum HOM05D005913 ORTHO05D007138 6.2e-56 222.2 264 50.0
PSO339G4526 Papaver somniferum HOM05D005913 ORTHO05D007138 8.1e-56 221.9 264 49.6
VMungo0647G0764 Vigna mungo HOM05D005913 ORTHO05D007138 8.1e-56 221.9 254 51.6
Potri.006G170500 Populus trichocarpa HOM05D005913 ORTHO05D007138 1.4e-55 221.1 248 53.6
Aqoxy4G02545 Aquilegia oxysepala HOM05D005913 ORTHO05D007138 2.0e-54 217.2 269 46.8
Phvul.001G033300 Phaseolus vulgaris HOM05D005913 ORTHO05D007138 9.9e-54 214.9 347 42.1
Actinidia16099 Actinidia chinensis HOM05D005913 ORTHO05D007138 4.2e-52 209.5 293 43.0
EL10Ac7g16180 Beta vulgaris HOM05D005913 ORTHO05D007138 3.5e-51 206.5 198 55.1
COL.COLO4_19170 Corchorus olitorius HOM05D005913 ORTHO05D001548 7.9e-51 205.3 243 50.6
CDE04G2145 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 6.7e-50 202.2 227 53.7
Thhalv10008508m.g Eutrema salsugineum HOM05D005913 ORTHO05D007138 1.4e-47 194.5 339 41.9
HPP92_028632 Vanilla planifolia HOM05D005913 ORTHO05D007138 6.9e-47 192.2 245 49.8
Lj4A493T9 Lonicera japonica HOM05D005913 ORTHO05D007138 4.5e-46 189.5 266 45.1
Ah.15g099480 Amaranthus hybridus HOM05D005913 ORTHO05D007138 7.6e-46 188.7 271 44.6
CARHR006930 Cardamine hirsuta HOM05D005913 ORTHO05D007138 7.1e-44 182.2 238 48.3
A10p05770 Brassica napus HOM05D005913 ORTHO05D007138 6.0e-43 179.1 233 48.5
BraA10t42838Z Brassica rapa HOM05D005913 ORTHO05D007138 6.0e-43 179.1 233 48.5
C05p05290 Brassica napus HOM05D005913 ORTHO05D007138 1.0e-42 178.3 231 49.4
BolC5t29300H Brassica oleracea HOM05D005913 ORTHO05D007138 1.0e-42 178.3 231 49.4
Carub.0001s0651 Capsella rubella HOM05D005913 ORTHO05D007138 5.1e-42 176.0 339 40.1
Sp1g05970 Schrenkiella parvula HOM05D005913 ORTHO05D007138 5.1e-42 176.0 339 40.1
CDE04G2770 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 1.1e-41 174.9 226 49.6
AT1G07210 Arabidopsis thaliana HOM05D005913 ORTHO05D007138 4.3e-41 172.9 253 45.5
C08p50760 Brassica napus HOM05D005913 ORTHO05D007138 7.4e-41 172.2 341 39.3
BolC8t52604H Brassica oleracea HOM05D005913 ORTHO05D007138 7.4e-41 172.2 223 48.4
BraA09t41996Z Brassica rapa HOM05D005913 ORTHO05D007138 7.4e-41 172.2 223 48.9
SalBow6G3913 Salvia bowleyana HOM05D005913 ORTHO05D007138 7.4e-41 172.2 320 39.7
HPP92_002930 Vanilla planifolia HOM05D005913 ORTHO05D007138 7.4e-41 172.2 252 45.6
AL1G17350 Arabidopsis lyrata HOM05D005913 ORTHO05D007138 9.6e-41 171.8 253 45.1
BcaC07g42020 Brassica carinata HOM05D005913 ORTHO05D007138 3.7e-40 169.9 341 39.0
Aa31LG1G6450 Aethionema arabicum HOM05D005913 ORTHO05D007138 4.8e-40 169.5 265 43.0
A09p66580 Brassica napus HOM05D005913 ORTHO05D007138 6.2e-40 169.1 223 48.4
Zm00001eb012770 Zea mays HOM05D005913 ORTHO05D007138 1.0e-37 161.8 322 38.2
BcaC07g42452 Brassica carinata HOM05D005913 ORTHO05D007138 1.7e-37 161.0 180 52.2
MD03G1068700 Malus domestica HOM05D005913 ORTHO05D007138 5.0e-37 159.5 130 70.0
Os10g0500500 Oryza sativa ssp. japonica HOM05D005913 ORTHO05D007138 3.2e-36 156.8 244 43.9
unitig_26.g9973 Utricularia gibba HOM05D005913 ORTHO05D007138 2.1e-35 154.1 142 59.2
Zm00001eb142300 Zea mays HOM05D005913 ORTHO05D007138 6.1e-35 152.5 210 45.7
TPR.G37238 Trifolium pratense HOM05D005913 ORTHO05D007138 4.8e-32 142.9 203 46.3
MD03G1068600 Malus domestica HOM05D005913 ORTHO05D007138 9.4e-28 128.6 137 52.6
Atru.chr3.4201 Acer truncatum HOM05D005913 ORTHO05D007138 4.6e-27 126.3 137 48.2
BcaC07g42451 Brassica carinata HOM05D005913 ORTHO05D007138 5.1e-26 122.9 119 58.8
BcaB07g33371 Brassica carinata HOM05D005913 ORTHO05D007138 8.8e-26 122.1 184 42.9
TPR.G4738 Trifolium pratense HOM05D005913 ORTHO05D007138 1.1e-25 121.7 149 45.6
ClCG02G019520 Citrullus lanatus HOM05D005913 ORTHO05D007138 5.7e-25 119.4 209 37.8
arahy.Tifrunner.gnm1.ann1.6CR394 Arachis hypogaea HOM05D005913 ORTHO05D007138 1.7e-21 107.8 107 58.9
Atru.chr3.4202 Acer truncatum HOM05D005913 ORTHO05D007138 5.0e-21 106.3 64 84.4
TPR.G3936 Trifolium pratense HOM05D005913 ORTHO05D007138 8.5e-21 105.5 109 57.8
SEGI_23907 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 2.2e-16 90.9 165 36.4
SEGI_13957 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 1.2e-14 85.1 114 47.4
Mapoly0046s0093 Marchantia polymorpha HOM05D005913 ORTHO05D007138 3.5e-14 83.6 309 29.1
Pp3c9_1670 Physcomitrium patens HOM05D005913 ORTHO05D007138 2.9e-13 80.5 320 28.8
TPR.G39004 Trifolium pratense HOM05D006629 ORTHO05D008430 6.1e-11 72.8 111 39.6
AagrBONN_evm.TU.Sc2ySwM_362.942 Anthoceros agrestis HOM05D005913 ORTHO05D007138 3.9e-10 70.1 240 30.4
SHI19145 Sapria himalayana HOM05D000002 ORTHO05D000001 5.2e-10 69.7 99 41.4
Solyc01g058530.4 Solanum lycopersicum HOM05D005913 ORTHO05D007138 8.8e-10 68.9 90 46.7
Peaxi162Scf00378g00212 Petunia axillaris HOM05D000011 ORTHO05D010520 1.5e-09 68.2 75 58.7


User provided reference genes

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