Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24232 Corylus avellana HOM05D005457 ORTHO05D006350 0.0e+00 2558.5 1502 100.0
QL01p028955 Quercus lobata HOM05D005457 ORTHO05D006350 0.0e+00 1730.7 1509 70.3
CiPaw.13G084000 Carya illinoinensis HOM05D005457 ORTHO05D006350 0.0e+00 1619.8 1519 67.0
Dinv34321 Davidia involucrata HOM05D005457 ORTHO05D006350 1.9e-300 1036.6 1697 52.0
Dinv17076 Davidia involucrata HOM05D005457 ORTHO05D006350 3.3e-284 982.6 1637 49.4
Dinv43020 Davidia involucrata HOM05D005457 ORTHO05D006350 3.3e-284 982.6 1637 49.4
Dinv43077 Davidia involucrata HOM05D005457 ORTHO05D006350 3.3e-284 982.6 1637 49.4
Prupe.6G064800 Prunus persica HOM05D005457 ORTHO05D006350 1.6e-283 980.3 1554 48.5
Atru.chr3.4038 Acer truncatum HOM05D005457 ORTHO05D006350 3.0e-269 932.9 1571 48.8
Ciclev10027683m.g Citrus clementina HOM05D005457 ORTHO05D006350 3.3e-260 902.9 1577 46.2
ClCG03G001030 Citrullus lanatus HOM05D005457 ORTHO05D006350 6.2e-259 898.7 1597 47.7
GSVIVG01024823001 Vitis vinifera HOM05D005457 ORTHO05D006350 1.8e-250 870.5 1715 46.8
Manes.02G123500 Manihot esculenta HOM05D005457 ORTHO05D006350 8.2e-243 845.1 1598 47.2
Thecc.09G309000 Theobroma cacao HOM05D005457 ORTHO05D006350 5.0e-240 835.9 1568 48.2
MD11G1084500 Malus domestica HOM05D005457 ORTHO05D006350 9.4e-239 831.6 1492 46.1
FvH4_3g37470 Fragaria vesca HOM05D005457 ORTHO05D006350 2.0e-236 823.9 1577 41.7
FAN11G1716 Fragaria x ananassa HOM05D005457 ORTHO05D006350 7.0e-234 815.5 1596 41.6
TAR369G0749 Trochodendron aralioides HOM05D005457 ORTHO05D006350 3.2e-231 806.6 1790 45.0
CsaV3_1G035890 Cucumis sativus L. HOM05D005457 ORTHO05D006350 9.4e-231 805.1 1602 46.7
FAN16G3594 Fragaria x ananassa HOM05D005457 ORTHO05D006350 2.7e-230 803.5 1571 43.2
MD03G1079900 Malus domestica HOM05D005457 ORTHO05D006350 1.0e-229 801.6 1529 45.3
FAN21G0431 Fragaria x ananassa HOM05D005457 ORTHO05D006350 9.7e-228 795.0 1585 43.0
FAN25G1264 Fragaria x ananassa HOM05D005457 ORTHO05D006350 9.7e-228 795.0 1581 41.2
Hma1.2p1_0543F.1_g175290 Hydrangea macrophylla HOM05D005457 ORTHO05D006350 9.1e-226 788.5 1610 43.7
Gorai.003G125700 Gossypium raimondii HOM05D005457 ORTHO05D006350 8.0e-214 748.8 1579 41.6
Sed0019872 Sechium edule HOM05D005457 ORTHO05D006350 2.3e-213 747.3 1577 42.7
Gohir.D03G119400 Gossypium hirsutum HOM05D005457 ORTHO05D006350 2.7e-209 733.8 1588 41.4
Gorai.003G125900 Gossypium raimondii HOM05D005457 ORTHO05D006350 2.7e-209 733.8 1563 41.0
Gohir.A03G047600 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.5e-207 728.0 1573 40.6
Gohir.D03G119500 Gossypium hirsutum HOM05D005457 ORTHO05D006350 3.0e-205 720.3 1550 41.4
Potri.001G247100 Populus trichocarpa HOM05D005457 ORTHO05D006350 3.3e-199 700.3 1590 41.2
Sabra09G0028400 Salix brachista HOM05D005457 ORTHO05D006350 5.8e-196 689.5 1578 40.9
Phvul.011G009900 Phaseolus vulgaris HOM05D005457 ORTHO05D006350 9.2e-194 682.2 1558 42.4
Lj1C143T9 Lonicera japonica HOM05D005457 ORTHO05D006350 2.7e-193 680.6 1586 40.7
vmacro03007 Vaccinium macrocarpon HOM05D005457 ORTHO05D006350 3.5e-193 680.2 1645 41.8
Nn2g13569 Nelumbo nucifera HOM05D005457 ORTHO05D006350 2.8e-190 670.6 1806 42.6
Gohir.A03G047700 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.0e-184 652.1 1546 43.3
Lalb_Chr01g0000381 Lupinus albus HOM05D005457 ORTHO05D006350 1.1e-183 648.7 1530 41.8
Glyma.12G007800 Glycine max HOM05D005457 ORTHO05D006350 2.9e-179 634.0 1559 41.1
arahy.Tifrunner.gnm1.ann1.L17SH6 Arachis hypogaea HOM05D005457 ORTHO05D006350 1.3e-176 625.2 1577 40.7
Rhsim13G0075000 Rhododendron simsii HOM05D005457 ORTHO05D006350 2.3e-176 624.4 1652 38.6
Ca_19579_v3 Cicer arietinum L. HOM05D005457 ORTHO05D006350 3.0e-176 624.0 1546 43.3
Nn2g11331 Nelumbo nucifera HOM05D005457 ORTHO05D006350 1.4e-173 615.1 1758 42.7
VMungo1127G1417 Vigna mungo HOM05D005457 ORTHO05D006350 1.8e-173 614.8 1566 40.0
CSS0049881 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 5.4e-170 603.2 1292 43.3
Psat7g154880 Pisum sativum HOM05D005457 ORTHO05D006350 1.6e-169 601.7 1544 39.2
arahy.Tifrunner.gnm1.ann1.U9UY67 Arachis hypogaea HOM05D005457 ORTHO05D006350 2.3e-168 597.8 1573 39.9
COL.COLO4_19073 Corchorus olitorius HOM05D005457 ORTHO05D006350 4.4e-164 583.6 1472 37.1
Sc12g0001060 Simmondsia chinensis HOM05D005457 ORTHO05D006350 2.1e-161 574.7 1579 39.5
CSS0035455 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 3.9e-160 570.5 1204 40.8
Glyma.09G228800 Glycine max HOM05D005457 ORTHO05D006350 3.9e-160 570.5 1547 40.0
Lj3g0007084 Lotus japonicus HOM05D005457 ORTHO05D006350 1.4e-157 562.0 1551 40.0
Aqoxy1G00759 Aquilegia oxysepala HOM05D005457 ORTHO05D006350 5.8e-156 556.6 1613 40.0
Hund11609 Selenicereus undatus HOM05D005457 ORTHO05D006350 8.7e-152 542.7 1581 40.2
MELO3C020581.2 Cucumis melo HOM05D005457 ORTHO05D006350 2.5e-151 541.2 1148 39.6
EL10Ac7g16099 Beta vulgaris HOM05D005457 ORTHO05D006350 9.0e-149 532.7 1594 40.0
Sopen09g014590 Solanum pennellii HOM05D005457 ORTHO05D006350 3.9e-144 517.3 1583 34.5
Cc00_g21960 Coffea canephora HOM05D005457 ORTHO05D006350 5.1e-144 516.9 1602 37.7
Solyc09g031650.3 Solanum lycopersicum HOM05D005457 ORTHO05D006350 1.8e-141 508.4 1598 34.6
Peaxi162Scf00433g00116 Petunia axillaris HOM05D005457 ORTHO05D006350 2.4e-133 481.5 1642 33.1
Potri.009G040500 Populus trichocarpa HOM05D005457 ORTHO05D006350 5.9e-132 476.9 1218 36.9
TPR.G3642 Trifolium pratense HOM05D005457 ORTHO05D006350 7.7e-132 476.5 1547 37.3
Lsat_1_v5_gn_9_25441 Lactuca sativa HOM05D005457 ORTHO05D006350 2.9e-131 474.6 1552 37.4
ECA247G2917 Erigeron canadensis HOM05D005457 ORTHO05D006350 9.4e-130 469.5 1549 36.2
SHI05894 Sapria himalayana HOM05D005457 ORTHO05D006350 6.7e-128 463.4 1629 34.6
Ah.14g082630 Amaranthus hybridus HOM05D005457 ORTHO05D006350 7.4e-127 459.9 1572 39.0
Medtr4g037575 Medicago truncatula HOM05D005457 ORTHO05D006350 1.7e-126 458.8 1549 38.1
RcHm_v2.0_Chr5g0067371 Rosa chinensis HOM05D005457 ORTHO05D006350 1.7e-126 458.8 1069 41.6
HanXRQChr08g0237081 Helianthus annuus HOM05D005457 ORTHO05D006350 2.8e-126 458.0 1542 37.4
AUR62001711 Chenopodium quinoa HOM05D005457 ORTHO05D006350 1.3e-123 449.1 1566 35.7
Actinidia25123 Actinidia chinensis HOM05D005457 ORTHO05D006350 3.8e-123 447.6 1102 39.1
CSS0006949 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 2.5e-122 444.9 983 39.6
CAN.G1002.16 Capsicum annuum HOM05D005457 ORTHO05D006350 5.5e-122 443.7 1565 34.7
MBI14_g32923_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 2.1e-113 415.2 1275 36.9
Cpa.g.sc112.89 Carica papaya HOM05D005457 ORTHO05D006350 5.5e-106 390.6 681 57.1
Lj2A1073T53 Lonicera japonica HOM05D005457 ORTHO05D006350 1.6e-105 389.0 1194 36.9
ATR0618G328 Amborella trichopoda HOM05D005457 ORTHO05D006350 6.1e-105 387.1 1718 35.6
SalBow2G3533 Salvia bowleyana HOM05D005457 ORTHO05D006350 3.2e-98 364.8 1616 34.3
DCAR_027735 Daucus carota HOM05D005457 ORTHO05D006350 4.2e-98 364.4 1560 33.8
TAR623G1178 Trochodendron aralioides HOM05D005457 ORTHO05D006350 2.7e-97 361.7 274 75.9
Nitab4.5_0000752g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 1.8e-96 359.0 1334 34.6
PSO782G3368 Papaver somniferum HOM05D005457 ORTHO05D006350 1.5e-95 355.9 1576 32.5
Eucgr.B02283 Eucalyptus grandis HOM05D005457 ORTHO05D006350 4.1e-93 347.8 1211 35.8
RcHm_v2.0_Chr5g0067361 Rosa chinensis HOM05D005457 ORTHO05D006350 9.1e-93 346.7 407 56.5
PSO170G6745 Papaver somniferum HOM05D005457 ORTHO05D006350 3.0e-88 331.6 1563 31.7
Nitab4.5_0006476g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 1.5e-87 329.3 1128 35.3
Cpa.g.sc112.90 Carica papaya HOM05D005457 ORTHO05D006350 1.3e-83 316.2 751 37.0
THA.LOC104799410 Tarenaya hassleriana HOM05D005457 ORTHO05D006350 5.6e-82 310.8 1538 31.3
DCAR_027737 Daucus carota HOM05D005457 ORTHO05D006350 2.1e-81 308.9 1532 30.5
Migut.N00905 Erythranthe guttata HOM05D005457 ORTHO05D006350 1.8e-80 305.8 1495 31.6
DCAR_027739 Daucus carota HOM05D005457 ORTHO05D006350 2.9e-78 298.5 1592 29.8
SGA_v2.0_scaffold199G41161 Striga asiatica HOM05D005457 ORTHO05D006350 8.3e-78 297.0 1591 32.1
Lj2C1073G13 Lonicera japonica HOM05D005457 ORTHO05D006350 9.2e-77 293.5 228 67.5
Actinidia08557 Actinidia chinensis HOM05D005457 ORTHO05D006350 4.7e-73 281.2 730 35.3
Manes.01G166000 Manihot esculenta HOM05D005457 ORTHO05D006350 4.4e-71 274.6 794 35.1
Zm00001eb159160 Zea mays HOM05D005457 ORTHO05D006350 3.7e-70 271.6 154 79.2
Zm00001eb358910 Zea mays HOM05D005457 ORTHO05D006350 1.0e-67 263.5 237 58.6
PGSC0003DMG400006701 Solanum tuberosum HOM05D005457 ORTHO05D006350 9.5e-66 256.9 1218 31.2
MBI14_g32924_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 5.2e-64 251.1 140 80.0
TAR623G1322 Trochodendron aralioides HOM05D005457 ORTHO05D006350 9.9e-63 246.9 478 45.6
AUR62020069 Chenopodium quinoa HOM05D005457 ORTHO05D006350 4.9e-62 244.6 657 34.9
Prupe.6G064700 Prunus persica HOM05D005457 ORTHO05D006350 3.2e-61 241.9 753 37.6
HPP92_001490 Vanilla planifolia HOM05D005457 ORTHO05D006350 2.3e-59 235.7 1748 32.2
TAR623G0390 Trochodendron aralioides HOM05D005457 ORTHO05D006350 4.4e-55 221.5 710 33.4
A03p11920 Brassica napus HOM05D005457 ORTHO05D006350 8.7e-51 207.2 179 57.0
Actinidia25125 Actinidia chinensis HOM05D005457 ORTHO05D006350 9.6e-50 203.8 101 88.1
Psat5g196760 Pisum sativum HOM05D005457 ORTHO05D002728 8.1e-49 200.7 169 64.5
BolC3t13849H Brassica oleracea HOM05D005457 ORTHO05D006350 2.6e-47 195.7 186 54.3
Duzib170G0589 Durio zibethinus HOM05D005457 ORTHO05D006350 4.4e-47 194.9 323 42.4
CDE09G0137 Ceratophyllum demersum HOM05D000076 ORTHO05D001377 9.9e-47 193.7 103 76.7
Oeu017421.1 Olea europaea HOM05D005457 ORTHO05D006350 7.3e-42 177.6 455 35.6
SEGI_21152 Sequoiadendron giganteum HOM05D005457 ORTHO05D006350 2.6e-39 169.1 178 52.2
BcaB08g36300 Brassica carinata HOM05D012589 ORTHO05D006350 8.4e-38 164.1 157 50.3
BraA03t10504Z Brassica rapa HOM05D005457 ORTHO05D006350 2.7e-36 159.1 195 46.2
BcaB01g04624 Brassica carinata HOM05D005457 ORTHO05D006350 6.7e-35 154.5 140 56.4
Oeu002456.1 Olea europaea HOM05D005457 ORTHO05D006350 5.6e-34 151.4 768 37.2
CSS0043795 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 5.3e-32 144.8 72 87.5
CSS0046602 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 5.3e-32 144.8 72 87.5
Duzib170G0080 Durio zibethinus HOM05D005457 ORTHO05D006350 9.0e-32 144.1 756 37.7
Cpa.g.sc112.91 Carica papaya HOM05D005457 ORTHO05D006350 2.0e-31 142.9 105 69.5
CDE09G0768 Ceratophyllum demersum HOM05D005457 ORTHO05D006350 1.3e-22 113.6 128 51.6
Actinidia08559 Actinidia chinensis HOM05D005457 ORTHO05D006350 1.6e-20 106.7 94 58.5
CDE02G3816 Ceratophyllum demersum HOM05D034644 ORTHO05D006350 4.6e-20 105.1 645 28.2
Psat2g109120 Pisum sativum HOM05D005457 ORTHO05D006350 2.8e-17 95.9 189 37.0
CBR_g29779 Chara braunii HOM05D005457 ORTHO05D006350 3.1e-16 92.4 136 30.9
CBR_g34581 Chara braunii HOM05D005457 ORTHO05D006350 3.1e-16 92.4 131 35.1
CBR_g49555 Chara braunii HOM05D005457 ORTHO05D006350 4.5e-15 88.6 140 27.9
unitig_27.g24807 Utricularia gibba HOM05D005457 ORTHO05D006350 3.8e-14 85.5 159 37.7
CBR_g34582 Chara braunii HOM05D005457 ORTHO05D006350 1.4e-13 83.6 115 32.2
CBR_g44392 Chara braunii HOM05D005457 ORTHO05D006350 1.9e-13 83.2 114 34.2
CBR_g34583 Chara braunii HOM05D005457 ORTHO05D006350 1.2e-12 80.5 96 35.4
Os12g0155300 Oryza sativa ssp. japonica HOM05D005457 ORTHO05D006350 4.6e-12 78.6 427 27.4
Psat0s560g0120 Pisum sativum HOM05D005457 ORTHO05D006350 3.0e-11 75.9 187 34.2
unitig_27.g24810 Utricularia gibba HOM05D005457 ORTHO05D006350 3.9e-11 75.5 52 65.4
Hund18872 Selenicereus undatus HOM05D005457 ORTHO05D006350 4.3e-10 72.0 489 24.9
PGSC0003DMG400009632 Solanum tuberosum HOM05D005457 ORTHO05D006350 4.1e-08 65.5 43 65.1
Nn2g14614 Nelumbo nucifera HOM05D005457 ORTHO05D006350 2.6e-07 62.8 91 41.8


User provided reference genes

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