Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 0.0e+00 1173.3 880 100.0
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 0.0e+00 1137.1 880 96.4
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 2.3e-205 719.9 903 69.2
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 2.2e-187 660.2 901 66.7
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 3.8e-139 500.0 933 58.2
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 1.2e-137 495.0 957 55.6
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 4.8e-126 456.4 929 53.3
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 5.3e-125 453.0 914 56.2
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 5.3e-125 453.0 914 56.2
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 5.3e-125 453.0 896 53.3
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 2.6e-124 450.7 913 56.6
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 3.0e-120 437.2 796 57.9
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 5.1e-120 436.4 977 56.4
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 2.4e-117 427.6 912 55.3
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 3.4e-116 423.7 910 55.2
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 2.7e-113 414.1 934 54.2
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 3.0e-112 410.6 917 51.7
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 3.3e-111 407.1 959 50.6
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 1.4e-109 401.7 894 51.1
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 3.1e-109 400.6 908 53.1
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 3.1e-109 400.6 942 52.9
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 3.1e-109 400.6 944 51.5
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 1.2e-108 398.7 942 49.7
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 1.8e-104 384.8 892 55.0
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 4.0e-104 383.6 908 54.0
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 5.2e-104 383.3 903 51.9
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.2e-103 382.1 907 52.1
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.7e-102 378.3 891 53.0
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 2.8e-102 377.5 892 52.6
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 2.4e-101 374.4 941 50.2
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 1.2e-100 372.1 902 51.7
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 5.9e-100 369.8 924 54.7
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 1.0e-99 369.0 921 52.1
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 2.2e-99 367.9 940 49.9
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.5e-98 364.4 889 53.7
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 5.2e-96 356.7 924 53.9
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 6.3e-94 349.7 948 47.7
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 8.3e-94 349.4 890 53.5
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 4.1e-93 347.1 903 48.8
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 1.3e-91 342.0 907 49.8
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 9.5e-90 335.9 987 47.6
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 8.0e-89 332.8 899 41.4
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 1.0e-88 332.4 912 52.2
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 2.6e-87 327.8 950 51.2
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 9.8e-87 325.9 915 51.6
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 1.1e-85 322.4 927 46.1
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 4.1e-85 320.5 923 47.3
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 3.8e-83 313.9 910 50.9
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 7.3e-82 309.7 967 42.4
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 1.2e-81 308.9 956 46.7
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 1.6e-81 308.5 964 50.3
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 1.4e-80 305.4 914 51.9
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 2.2e-78 298.1 906 51.5
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 3.2e-77 294.3 950 44.3
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 5.4e-77 293.5 923 46.8
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 5.0e-75 287.0 821 44.7
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 5.6e-74 283.5 957 47.1
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 1.2e-73 282.3 933 44.3
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 2.8e-73 281.2 964 46.4
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 4.7e-73 280.4 876 43.6
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 2.3e-72 278.1 945 45.9
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 2.3e-72 278.1 937 39.3
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 3.1e-72 277.7 304 58.6
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 6.8e-72 276.6 904 47.6
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 1.2e-71 275.8 823 54.2
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 6.4e-70 270.0 229 68.6
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 7.0e-69 266.5 286 58.4
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 1.0e-67 262.7 234 69.2
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 1.7e-67 261.9 923 42.4
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 3.0e-67 261.2 303 57.1
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 2.5e-66 258.1 279 58.8
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 3.3e-66 257.7 316 61.7
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 3.3e-66 257.7 941 47.3
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 7.3e-66 256.5 944 42.9
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 9.5e-66 256.1 243 63.4
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 1.6e-65 255.4 305 61.3
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 1.1e-64 252.7 330 53.9
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 1.4e-64 252.3 288 57.3
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 4.0e-64 250.8 930 44.1
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 4.0e-64 250.8 942 46.9
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 1.5e-63 248.8 292 56.2
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 4.4e-63 247.3 239 65.7
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 1.1e-61 242.7 255 60.0
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 1.4e-61 242.3 295 53.9
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 5.4e-61 240.4 309 54.4
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 6.0e-60 236.9 214 65.0
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 6.6e-59 233.4 298 55.0
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 8.6e-59 233.0 310 53.5
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 1.1e-58 232.6 135 88.1
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 3.3e-58 231.1 141 83.0
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 7.3e-58 229.9 336 51.2
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 1.2e-57 229.2 942 50.3
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 2.8e-57 228.0 209 63.6
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 4.7e-57 227.3 141 84.4
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 8.1e-57 226.5 137 83.9
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 3.1e-56 224.6 140 81.4
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 1.3e-54 219.2 292 54.5
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 8.4e-54 216.5 939 43.0
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 9.2e-53 213.0 306 51.0
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 6.0e-52 210.3 912 40.6
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 1.1e-50 206.1 265 52.5
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.1e-50 206.1 309 47.6
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 4.3e-50 204.1 131 77.9
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 5.6e-50 203.8 356 45.2
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 5.6e-50 203.8 356 45.2
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 9.6e-50 203.0 923 45.7
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 4.7e-49 200.7 279 49.1
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 1.8e-48 198.7 949 42.4
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 1.2e-47 196.1 978 41.8
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 1.5e-47 195.7 113 87.6
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 4.4e-47 194.1 148 67.6
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 4.4e-47 194.1 803 47.1
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 4.9e-46 190.7 134 72.4
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 1.3e-43 182.6 219 52.1
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 3.9e-43 181.0 260 52.7
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 2.9e-38 164.9 154 58.4
Cpa.g.sc81.96 Carica papaya HOM05D005166 ORTHO05D006120 2.1e-36 158.7 408 42.4
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 8.1e-33 146.7 197 48.7
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 9.0e-32 143.3 100 72.0
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 2.6e-31 141.7 134 61.9
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 3.9e-27 127.9 104 64.4
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 1.9e-26 125.6 153 49.7
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 4.9e-22 110.9 128 50.8
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 2.7e-20 105.1 120 46.7
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 1.2e-15 89.7 61 77.0
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 2.9e-14 85.1 57 73.7
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 8.5e-14 83.6 60 75.0
Oeu053892.1 Olea europaea HOM05D005166 ORTHO05D006120 1.0e-11 76.6 420 36.0
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 3.7e-09 68.2 37 86.5
PRCOL_00003490 Prasinoderma coloniale HOM05D005166 ORTHO05D006120 1.5e-07 62.8 121 33.9


User provided reference genes

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