Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24152 Corylus avellana HOM05D006297 ORTHO05D007873 7.4e-198 693.7 362 100.0
Cfa011548 Carpinus fangiana HOM05D006297 ORTHO05D007873 1.4e-169 599.7 365 87.4
QL01p030412 Quercus lobata HOM05D006297 ORTHO05D007873 9.3e-92 341.3 389 58.6
Manes.02G129500 Manihot esculenta HOM05D006297 ORTHO05D007873 1.6e-80 303.9 401 48.9
CiPaw.13G089900 Carya illinoinensis HOM05D006297 ORTHO05D007873 1.5e-78 297.4 399 52.1
Potri.009G035300 Populus trichocarpa HOM05D006297 ORTHO05D007873 4.9e-77 292.4 376 48.9
PGR119G2469 Punica granatum HOM05D006297 ORTHO05D007873 5.5e-76 288.9 374 48.4
Sabra09G0025100 Salix brachista HOM05D006297 ORTHO05D010418 9.3e-76 288.1 368 49.7
Dinv34277 Davidia involucrata HOM05D006297 ORTHO05D007873 2.4e-71 273.5 370 49.7
Actinidia33772 Actinidia chinensis HOM05D006297 ORTHO05D007873 3.8e-69 266.2 356 48.9
Ca_20618_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 3.3e-65 253.1 429 44.1
MELO3C020609.2 Cucumis melo HOM05D006297 ORTHO05D007873 2.2e-64 250.4 356 47.2
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 8.2e-64 248.4 359 45.4
TWI79G0566 Tripterygium wilfordii HOM05D000001 ORTHO05D010418 2.6e-62 243.4 356 46.6
Thecc.09G316300 Theobroma cacao HOM05D006297 ORTHO05D007873 1.3e-61 241.1 365 47.1
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 1.7e-61 240.7 356 44.4
CsaV3_1G034520 Cucumis sativus L. HOM05D006297 ORTHO05D007873 6.5e-61 238.8 375 44.3
TAR369G0304 Trochodendron aralioides HOM05D006297 ORTHO05D007873 1.9e-60 237.3 350 43.4
ClCG03G001300 Citrullus lanatus HOM05D006297 ORTHO05D007873 7.2e-60 235.3 381 46.2
Ciclev10029821m.g Citrus clementina HOM05D006297 ORTHO05D007873 3.6e-59 233.0 367 46.6
Potri.001G243900 Populus trichocarpa HOM05D006297 ORTHO05D007873 7.9e-59 231.9 452 39.6
COL.COLO4_18571 Corchorus olitorius HOM05D006297 ORTHO05D007873 1.0e-58 231.5 330 46.7
CANSAT54G0582 Cannabis sativa HOM05D006297 ORTHO05D007873 1.3e-58 231.1 451 39.9
Duzib168G2114 Durio zibethinus HOM05D006297 ORTHO05D007873 2.3e-58 230.3 359 46.5
Medtr4g064830 Medicago truncatula HOM05D006297 ORTHO05D007873 2.3e-58 230.3 424 41.3
Eucgr.B02311 Eucalyptus grandis HOM05D006297 ORTHO05D007873 1.7e-56 224.2 366 43.4
MD11G1095400 Malus domestica HOM05D006297 ORTHO05D007873 3.1e-55 219.9 468 40.0
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 4.1e-55 219.5 311 47.6
RcHm_v2.0_Chr5g0066301 Rosa chinensis HOM05D006297 ORTHO05D007873 1.5e-54 217.6 539 38.0
Nitab4.5_0006916g0050 Nicotiana tabacum HOM05D006297 ORTHO05D007873 2.0e-54 217.2 431 40.6
Glyma.11G136300 Glycine max HOM05D006297 ORTHO05D007873 3.4e-54 216.5 435 40.9
Lalb_Chr22g0352441 Lupinus albus HOM05D006297 ORTHO05D007873 4.5e-54 216.1 402 42.3
MSTRG.18559 Avicennia marina HOM05D006297 ORTHO05D007873 5.0e-53 212.6 407 39.6
Lalb_Chr01g0003491 Lupinus albus HOM05D006297 ORTHO05D007873 8.5e-53 211.8 415 41.4
Prupe.6G070900 Prunus persica HOM05D006297 ORTHO05D007873 1.9e-52 210.7 473 39.5
TPR.G23574 Trifolium pratense HOM05D006297 ORTHO05D007873 3.2e-52 209.9 395 41.5
Migut.D00880 Erythranthe guttata HOM05D006297 ORTHO05D007873 9.4e-52 208.4 404 40.6
Nn2g13426 Nelumbo nucifera HOM05D006297 ORTHO05D007873 1.2e-51 208.0 445 37.5
Lalb_Chr03g0026471 Lupinus albus HOM05D006297 ORTHO05D007873 3.6e-51 206.5 386 42.5
Peaxi162Scf00481g00328 Petunia axillaris HOM05D006297 ORTHO05D007873 6.1e-51 205.7 363 41.3
Lj3g0014453 Lotus japonicus HOM05D006297 ORTHO05D007873 7.9e-51 205.3 439 41.0
CiPaw.14G065800 Carya illinoinensis HOM05D006297 ORTHO05D007873 1.0e-50 204.9 382 44.2
Sed0011562 Sechium edule HOM05D006297 ORTHO05D007873 1.4e-50 204.5 397 40.8
arahy.Tifrunner.gnm1.ann1.NT76K4 Arachis hypogaea HOM05D006297 ORTHO05D007873 5.1e-50 202.6 449 41.2
Sed0017584 Sechium edule HOM05D006297 ORTHO05D007873 1.5e-49 201.1 358 39.4
arahy.Tifrunner.gnm1.ann1.FG1CRE Arachis hypogaea HOM05D006297 ORTHO05D007873 2.6e-49 200.3 449 41.0
Psat7g210960 Pisum sativum HOM05D006297 ORTHO05D007873 2.6e-49 200.3 443 39.5
Sabra16G0148100 Salix brachista HOM05D000026 ORTHO05D000094 8.2e-48 195.3 451 36.1
CSS0015831 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 3.1e-47 193.4 382 42.4
Glyma.12G060000 Glycine max HOM05D006297 ORTHO05D007873 3.1e-47 193.4 486 36.4
Phvul.011G061900 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 2.6e-46 190.3 462 36.6
VMungo1127G1804 Vigna mungo HOM05D006297 ORTHO05D007873 5.9e-46 189.1 488 36.9
Sc12g0001260 Simmondsia chinensis HOM05D006297 ORTHO05D007873 7.7e-46 188.7 388 38.4
Lj3g0003832 Lotus japonicus HOM05D006297 ORTHO05D007873 1.7e-45 187.6 352 40.3
Rhsim13G0077500 Rhododendron simsii HOM05D000001 ORTHO05D010418 5.0e-45 186.0 376 38.6
Solyc06g076370.4 Solanum lycopersicum HOM05D006297 ORTHO05D007873 4.2e-44 183.0 427 36.8
Sopen06g032780 Solanum pennellii HOM05D006297 ORTHO05D007873 9.4e-44 181.8 429 36.6
CAN.G394.75 Capsicum annuum HOM05D006297 ORTHO05D007873 1.0e-42 178.3 347 40.9
Cc01_g13310 Coffea canephora HOM05D006297 ORTHO05D007873 1.0e-42 178.3 431 35.7
Aqoxy1G00878 Aquilegia oxysepala HOM05D006297 ORTHO05D007873 6.7e-42 175.6 404 35.9
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 3.3e-41 173.3 403 35.5
FvH4_3g36910 Fragaria vesca HOM05D006297 ORTHO05D007873 1.6e-38 164.5 586 31.6
SGA_v2.0_scaffold54G19479 Striga asiatica HOM05D006297 ORTHO05D007873 2.0e-38 164.1 375 38.1
Glyma.13G338800 Glycine max HOM05D006297 ORTHO05D007873 2.6e-38 163.7 433 35.1
Nitab4.5_0023946g0010 Nicotiana tabacum HOM05D006297 ORTHO05D007873 3.5e-38 163.3 418 35.4
Glyma.15G035500 Glycine max HOM05D006297 ORTHO05D007873 1.5e-36 157.9 405 36.0
DCAR_007431 Daucus carota HOM05D006297 ORTHO05D000003 2.3e-34 150.6 338 38.8
Medtr2g097710 Medicago truncatula HOM05D006297 ORTHO05D007873 1.2e-33 148.3 378 38.4
Duzib170G0989 Durio zibethinus HOM05D006297 ORTHO05D007873 4.4e-33 146.4 256 43.8
PGSC0003DMG400030329 Solanum tuberosum HOM05D006297 ORTHO05D007873 9.7e-33 145.2 335 35.5
MBI05_g35633_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 1.3e-32 144.8 286 37.8
TPR.G6873 Trifolium pratense HOM05D006297 ORTHO05D007873 1.7e-32 144.4 390 36.9
AUR62001745 Chenopodium quinoa HOM05D006297 ORTHO05D007873 4.1e-31 139.8 451 31.5
Dinv42987 Davidia involucrata HOM05D006297 ORTHO05D007873 2.0e-30 137.5 366 34.4
Ca_01304_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 3.5e-30 136.7 379 35.1
Phvul.L008043 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 3.5e-30 136.7 294 37.4
AUR62020026 Chenopodium quinoa HOM05D006297 ORTHO05D007873 5.9e-30 136.0 414 33.6
FAN11G1892 Fragaria x ananassa HOM05D006297 ORTHO05D007873 1.0e-29 135.2 583 29.2
A01p26050 Brassica napus HOM05D006297 ORTHO05D007873 2.2e-29 134.0 404 31.4
Gohir.D07G104500 Gossypium hirsutum HOM05D006297 ORTHO05D007873 2.2e-29 134.0 295 36.6
BraA01t02522Z Brassica rapa HOM05D006297 ORTHO05D007873 5.0e-29 132.9 395 31.4
FAN16G1466 Fragaria x ananassa HOM05D006297 ORTHO05D007873 5.0e-29 132.9 559 30.4
unitig_899.g15423 Utricularia gibba HOM05D006297 ORTHO05D007873 5.0e-29 132.9 277 41.2
arahy.Tifrunner.gnm1.ann1.19P32Y Arachis hypogaea HOM05D006297 ORTHO05D007873 6.5e-29 132.5 151 53.6
arahy.Tifrunner.gnm1.ann1.2MBI16 Arachis hypogaea HOM05D006297 ORTHO05D007873 6.5e-29 132.5 151 53.6
AT3G46750 Arabidopsis thaliana HOM05D006297 ORTHO05D007873 8.5e-29 132.1 421 29.7
A06p20810 Brassica napus HOM05D006297 ORTHO05D007873 3.2e-28 130.2 362 31.2
Sp5g14970 Schrenkiella parvula HOM05D006297 ORTHO05D007873 5.5e-28 129.4 437 28.8
BcaC09g49771 Brassica carinata HOM05D006297 ORTHO05D007873 9.4e-28 128.6 404 30.2
Lalb_Chr24g0397191 Lupinus albus HOM05D006297 ORTHO05D007873 1.2e-27 128.3 130 56.9
Psat5g118640 Pisum sativum HOM05D006297 ORTHO05D007873 1.2e-27 128.3 184 48.9
CARHR154920 Cardamine hirsuta HOM05D006297 ORTHO05D007873 2.1e-27 127.5 419 29.1
ATR0559G346 Amborella trichopoda HOM05D006297 ORTHO05D007873 2.7e-27 127.1 267 39.3
Carub.0005s1301 Capsella rubella HOM05D006297 ORTHO05D007873 3.6e-27 126.7 423 30.0
Aa31LG4G15680 Aethionema arabicum HOM05D006297 ORTHO05D007873 4.7e-27 126.3 399 31.1
BcaB05g23510 Brassica carinata HOM05D006297 ORTHO05D007873 8.0e-27 125.6 407 30.0
Dinv17042 Davidia involucrata HOM05D006297 ORTHO05D007873 8.0e-27 125.6 122 60.7
Dinv43112 Davidia involucrata HOM05D006297 ORTHO05D007873 8.0e-27 125.6 122 60.7
Nn2g11187 Nelumbo nucifera HOM05D006297 ORTHO05D007873 1.0e-26 125.2 280 37.5
AL5G25730 Arabidopsis lyrata HOM05D006297 ORTHO05D007873 1.8e-26 124.4 421 30.6
Thhalv10002567m.g Eutrema salsugineum HOM05D006297 ORTHO05D007873 2.3e-26 124.0 419 28.9
FAN25G2608 Fragaria x ananassa HOM05D006297 ORTHO05D007873 3.0e-26 123.6 583 29.5
Lsat_1_v5_gn_8_72960 Lactuca sativa HOM05D006297 ORTHO05D007873 5.2e-26 122.9 331 32.6
BolC1t03251H Brassica oleracea HOM05D000026 ORTHO05D007873 8.8e-26 122.1 361 31.3
VMungo1080G0409 Vigna mungo HOM05D006297 ORTHO05D007873 8.8e-26 122.1 447 33.3
C03p70940 Brassica napus HOM05D006297 ORTHO05D007873 1.2e-25 121.7 357 30.0
BolC3t19369H Brassica oleracea HOM05D006297 ORTHO05D007873 1.2e-25 121.7 357 30.0
FAN21G2693 Fragaria x ananassa HOM05D006297 ORTHO05D007873 2.6e-25 120.6 586 28.2
BcaC01g01889 Brassica carinata HOM05D006297 ORTHO05D007873 3.4e-25 120.2 358 30.7
DCAR_018924 Daucus carota HOM05D006297 ORTHO05D007873 3.4e-25 120.2 314 33.8
Hma1.2p1_0757F.1_g213410 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 5.4e-23 112.8 113 64.6
Hund04923 Selenicereus undatus HOM05D006297 ORTHO05D007873 9.1e-23 112.1 400 28.8
MBI14_g08019_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 7.7e-22 109.0 279 35.1
HanXRQChr05g0135261 Helianthus annuus HOM05D006297 ORTHO05D007873 1.3e-21 108.2 337 32.6
SalBow6G6944 Salvia bowleyana HOM05D006297 ORTHO05D007873 2.9e-21 107.1 506 28.1
Dinv17043 Davidia involucrata HOM05D006297 ORTHO05D007873 4.2e-20 103.2 130 51.5
Dinv43111 Davidia involucrata HOM05D006297 ORTHO05D007873 4.2e-20 103.2 130 51.5
QL10p061553 Quercus lobata HOM05D006297 ORTHO05D007873 1.6e-19 101.3 259 32.8
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 5.7e-17 92.8 452 26.3
Ah.08g219890 Amaranthus hybridus HOM05D006297 ORTHO05D007873 1.3e-16 91.7 112 51.8
PSO339G0783 Papaver somniferum HOM05D006297 ORTHO05D007873 3.7e-16 90.1 433 27.7
Lsat_1_v5_gn_5_169521 Lactuca sativa HOM05D006297 ORTHO05D007873 8.3e-16 89.0 346 29.5
QL10p066115 Quercus lobata HOM05D006297 ORTHO05D017888 3.1e-15 87.0 211 32.7
SalBow1G2607 Salvia bowleyana HOM05D006297 ORTHO05D007873 1.2e-14 85.1 146 41.8
EL10Ac7g16061 Beta vulgaris HOM05D006297 ORTHO05D007873 3.5e-14 83.6 425 26.6
C01p33140 Brassica napus HOM05D006297 ORTHO05D007873 4.3e-12 76.6 207 33.8
BcaB02g10710 Brassica carinata HOM05D006297 ORTHO05D007873 2.8e-11 73.9 237 30.8
HanXRQChr11g0340671 Helianthus annuus HOM05D006297 ORTHO05D007873 2.6e-09 67.4 104 41.3
CDE07G0208 Ceratophyllum demersum HOM05D006297 ORTHO05D007873 1.3e-08 65.1 81 45.7
HPP92_015541 Vanilla planifolia HOM05D043147 ORTHO05D007873 3.5e-06 57.0 319 24.5
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 7.8e-06 55.8 51 51.0
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 7.8e-06 55.8 51 51.0
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 7.8e-06 55.8 51 51.0
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 7.8e-06 55.8 51 51.0


User provided reference genes

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