Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24115 Corylus avellana HOM05D004332 ORTHO05D005116 5.9e-42 173.7 83 100.0
CiPaw.13G092600 Carya illinoinensis HOM05D004332 ORTHO05D005116 4.5e-34 147.5 74 90.5
Actinidia37195 Actinidia chinensis HOM05D004332 ORTHO05D005116 3.8e-33 144.4 74 89.2
Rhsim01G0229500 Rhododendron simsii HOM05D004332 ORTHO05D005116 1.1e-32 142.9 75 90.7
Actinidia34413 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.4e-32 142.5 77 89.6
QL01p031517 Quercus lobata HOM05D004332 ORTHO05D005116 1.4e-32 142.5 75 88.0
Dinv04179 Davidia involucrata HOM05D004332 ORTHO05D005116 4.2e-32 141.0 78 87.2
TWI31G0816 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 4.2e-32 141.0 76 88.2
vmacro14542 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 4.2e-32 141.0 75 89.3
CiPaw.14G067900 Carya illinoinensis HOM05D004332 ORTHO05D005116 5.5e-32 140.6 74 85.1
Dinv17021 Davidia involucrata HOM05D004332 ORTHO05D005116 1.6e-31 139.0 77 87.0
Dinv42969 Davidia involucrata HOM05D004332 ORTHO05D005116 1.6e-31 139.0 77 87.0
Dinv43130 Davidia involucrata HOM05D004332 ORTHO05D005116 1.6e-31 139.0 77 87.0
CANSAT54G0234 Cannabis sativa HOM05D004332 ORTHO05D005116 2.7e-31 138.3 75 84.0
Hma1.2p1_0615F.1_g189860 Hydrangea macrophylla HOM05D004332 ORTHO05D005116 2.7e-31 138.3 75 86.7
vmacro03061 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 3.6e-31 137.9 81 81.5
Manes.02G131400 Manihot esculenta HOM05D004332 ORTHO05D005116 4.7e-31 137.5 76 86.8
Prupe.6G074300 Prunus persica HOM05D004332 ORTHO05D005116 4.7e-31 137.5 79 82.3
Rhsim13G0081500 Rhododendron simsii HOM05D004332 ORTHO05D005116 7.9e-31 136.7 75 85.3
arahy.Tifrunner.gnm1.ann1.KAW7XL Arachis hypogaea HOM05D004332 ORTHO05D005116 1.0e-30 136.3 74 82.4
arahy.Tifrunner.gnm1.ann1.WMUR0J Arachis hypogaea HOM05D004332 ORTHO05D005116 1.0e-30 136.3 74 82.4
Manes.01G172400 Manihot esculenta HOM05D004332 ORTHO05D005116 1.0e-30 136.3 76 84.2
CSS0027892 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 1.8e-30 135.6 79 83.5
Ciclev10029562m.g Citrus clementina HOM05D004332 ORTHO05D005116 1.8e-30 135.6 80 82.5
GSVIVG01024938001 Vitis vinifera HOM05D004332 ORTHO05D005116 2.3e-30 135.2 76 84.2
CSS0035025 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 3.0e-30 134.8 77 83.1
MD03G1090100 Malus domestica HOM05D004332 ORTHO05D005116 3.0e-30 134.8 78 82.1
ClCG03G001410 Citrullus lanatus HOM05D004332 ORTHO05D005116 5.1e-30 134.0 74 79.7
COL.COLO4_18528 Corchorus olitorius HOM05D004332 ORTHO05D005116 5.1e-30 134.0 77 81.8
Thecc.09G319900 Theobroma cacao HOM05D004332 ORTHO05D005116 5.1e-30 134.0 77 80.5
TWI75G0441 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 6.7e-30 133.7 75 84.0
Cc01_g13020 Coffea canephora HOM05D004332 ORTHO05D005116 8.8e-30 133.3 75 82.7
Gohir.A05G094800 Gossypium hirsutum HOM05D004332 ORTHO05D005116 8.8e-30 133.3 77 80.5
Gohir.D05G095080 Gossypium hirsutum HOM05D004332 ORTHO05D005116 8.8e-30 133.3 77 80.5
Gohir.D05G095200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 8.8e-30 133.3 77 80.5
TAR636G3330 Trochodendron aralioides HOM05D004332 ORTHO05D005116 1.1e-29 132.9 74 86.5
Glyma.11G138900 Glycine max HOM05D004332 ORTHO05D005116 2.0e-29 132.1 75 78.7
Eucgr.J02045 Eucalyptus grandis HOM05D004332 ORTHO05D005116 2.6e-29 131.7 80 81.2
Glyma.12G062500 Glycine max HOM05D004332 ORTHO05D005116 2.6e-29 131.7 75 77.3
Gohir.D03G124100 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.6e-29 131.7 77 79.2
MD11G1099700 Malus domestica HOM05D004332 ORTHO05D005116 2.6e-29 131.7 80 80.0
TAR633G2148 Trochodendron aralioides HOM05D004332 ORTHO05D005116 4.4e-29 131.0 74 82.4
Migut.N00901 Erythranthe guttata HOM05D004332 ORTHO05D005116 7.4e-29 130.2 77 77.9
SGA_v2.0_scaffold132G34538 Striga asiatica HOM05D004332 ORTHO05D005116 7.4e-29 130.2 77 76.6
MELO3C020622.2 Cucumis melo HOM05D004332 ORTHO05D005116 9.7e-29 129.8 74 77.0
MELO3C025906.2 Cucumis melo HOM05D004332 ORTHO05D005116 9.7e-29 129.8 77 77.9
Gohir.A03G043200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 9.7e-29 129.8 76 80.3
Lsat_1_v5_gn_9_23661 Lactuca sativa HOM05D004332 ORTHO05D005116 9.7e-29 129.8 75 80.0
CsaV3_6G016760 Cucumis sativus L. HOM05D004332 ORTHO05D005116 1.3e-28 129.4 77 76.6
Duzib150G0187 Durio zibethinus HOM05D004332 ORTHO05D005116 1.3e-28 129.4 75 80.0
Oeu017398.1 Olea europaea HOM05D004332 ORTHO05D005116 1.3e-28 129.4 78 78.2
Duzib168G2052 Durio zibethinus HOM05D004332 ORTHO05D005116 1.7e-28 129.0 76 80.3
Gorai.009G098500 Gossypium raimondii HOM05D004332 ORTHO05D005116 1.7e-28 129.0 77 79.2
Gorai.003G130800 Gossypium raimondii HOM05D004332 ORTHO05D005116 2.2e-28 128.6 78 78.2
MBI05_g28381_MAGBIO Magnolia biondii HOM05D004332 ORTHO05D005116 2.8e-28 128.3 75 78.7
Potri.001G241500 Populus trichocarpa HOM05D004332 ORTHO05D005116 2.8e-28 128.3 79 81.0
Gorai.001G111400 Gossypium raimondii HOM05D004332 ORTHO05D005116 3.7e-28 127.9 75 78.7
Nn2g11136 Nelumbo nucifera HOM05D004332 ORTHO05D005116 3.7e-28 127.9 74 78.4
Sed0025770 Sechium edule HOM05D004332 ORTHO05D005116 3.7e-28 127.9 74 74.3
Gohir.D07G103500 Gossypium hirsutum HOM05D004332 ORTHO05D005116 4.8e-28 127.5 75 78.7
Sed0019241 Sechium edule HOM05D004332 ORTHO05D005116 4.8e-28 127.5 75 73.3
Oeu064111.2 Olea europaea HOM05D004332 ORTHO05D005116 6.3e-28 127.1 75 74.7
TPR.G34281 Trifolium pratense HOM05D004332 ORTHO05D005116 6.3e-28 127.1 74 78.4
Lalb_Chr03g0026581 Lupinus albus HOM05D004332 ORTHO05D005116 8.2e-28 126.7 74 74.3
Lalb_Chr19g0137881 Lupinus albus HOM05D004332 ORTHO05D005116 8.2e-28 126.7 74 75.7
Carub.0008s2008 Capsella rubella HOM05D004332 ORTHO05D005116 1.1e-27 126.3 79 74.7
HanXRQChr08g0237001 Helianthus annuus HOM05D004332 ORTHO05D005116 1.8e-27 125.6 75 81.3
Sp6g21090 Schrenkiella parvula HOM05D004332 ORTHO05D005116 1.8e-27 125.6 75 73.3
arahy.Tifrunner.gnm1.ann1.TT4C38 Arachis hypogaea HOM05D004332 ORTHO05D005116 3.1e-27 124.8 75 76.0
Oeu002423.1 Olea europaea HOM05D004332 ORTHO05D005116 4.1e-27 124.4 77 75.3
THA.LOC104814879 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 4.1e-27 124.4 76 75.0
CsaV3_1G034360 Cucumis sativus L. HOM05D004332 ORTHO05D005116 5.3e-27 124.0 74 77.0
ClCG02G020050 Citrullus lanatus HOM05D004332 ORTHO05D005116 7.0e-27 123.6 76 75.0
Sabra09G0022800 Salix brachista HOM05D004332 ORTHO05D005116 7.0e-27 123.6 80 76.2
FAN16G1081 Fragaria x ananassa HOM05D004332 ORTHO05D005116 9.1e-27 123.2 77 77.9
FAN25G2250 Fragaria x ananassa HOM05D004332 ORTHO05D005116 9.1e-27 123.2 77 77.9
VMungo1127G1024 Vigna mungo HOM05D004332 ORTHO05D005116 9.1e-27 123.2 75 76.0
Potri.009G032100 Populus trichocarpa HOM05D004332 ORTHO05D005116 1.2e-26 122.9 80 76.2
Sed0013921 Sechium edule HOM05D004332 ORTHO05D005116 1.2e-26 122.9 76 73.7
ATR0559G209 Amborella trichopoda HOM05D004332 ORTHO05D005116 1.6e-26 122.5 75 78.7
AL8G35880 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 1.6e-26 122.5 77 72.7
AT5G59410 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 1.6e-26 122.5 78 75.6
Phvul.011G063600 Phaseolus vulgaris HOM05D004332 ORTHO05D005116 1.6e-26 122.5 75 76.0
SalBow2G0012 Salvia bowleyana HOM05D004332 ORTHO05D005116 1.6e-26 122.5 79 70.9
TAR369G0503 Trochodendron aralioides HOM05D004332 ORTHO05D005116 1.6e-26 122.5 73 79.5
CARHR122250 Cardamine hirsuta HOM05D004332 ORTHO05D005116 2.0e-26 122.1 79 73.4
DCAR_018915 Daucus carota HOM05D004332 ORTHO05D005116 2.0e-26 122.1 74 73.0
FvH4_3g36490 Fragaria vesca HOM05D004332 ORTHO05D005116 2.0e-26 122.1 77 76.6
FAN11G3576 Fragaria x ananassa HOM05D004332 ORTHO05D005116 2.0e-26 122.1 77 76.6
unitig_6.g29275 Utricularia gibba HOM05D004332 ORTHO05D005116 2.0e-26 122.1 76 73.7
unitig_747.g21434 Utricularia gibba HOM05D004332 ORTHO05D005116 2.0e-26 122.1 76 73.7
ECA247G3838 Erigeron canadensis HOM05D004332 ORTHO05D005116 2.6e-26 121.7 73 78.1
AL146U10030 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 3.5e-26 121.3 80 72.5
arahy.Tifrunner.gnm1.ann1.A22IES Arachis hypogaea HOM05D004332 ORTHO05D005116 3.5e-26 121.3 75 73.3
PGR102G2585 Punica granatum HOM05D004332 ORTHO05D005116 3.5e-26 121.3 76 80.3
AUR62009559 Chenopodium quinoa HOM05D004332 ORTHO05D005116 4.5e-26 120.9 75 72.0
Hund04945 Selenicereus undatus HOM05D004332 ORTHO05D005116 4.5e-26 120.9 74 75.7
Aa31LG5G7210 Aethionema arabicum HOM05D004332 ORTHO05D005116 5.9e-26 120.6 80 71.2
Sabra16G0146000 Salix brachista HOM05D004332 ORTHO05D005116 5.9e-26 120.6 91 71.4
Lj3g0024178 Lotus japonicus HOM05D004332 ORTHO05D005116 7.7e-26 120.2 74 74.3
Thhalv10015001m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 1.0e-25 119.8 79 72.2
Gohir.A07G099000 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.3e-25 119.4 76 75.0
BcaB02g10224 Brassica carinata HOM05D004332 ORTHO05D005116 1.7e-25 119.0 81 71.6
CARHR285780 Cardamine hirsuta HOM05D004332 ORTHO05D005116 1.7e-25 119.0 78 69.2
Thhalv10017410m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 1.7e-25 119.0 80 71.2
FAN21G1178 Fragaria x ananassa HOM05D004332 ORTHO05D005116 1.7e-25 119.0 79 75.9
Psat5g286720 Pisum sativum HOM05D004332 ORTHO05D005116 1.7e-25 119.0 74 75.7
AL4G23580 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 2.9e-25 118.2 77 74.0
AT2G29020 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 2.9e-25 118.2 81 70.4
A04p21990 Brassica napus HOM05D004332 ORTHO05D005116 2.9e-25 118.2 80 71.2
BraA04t17767Z Brassica rapa HOM05D004332 ORTHO05D005116 2.9e-25 118.2 80 71.2
Medtr2g097270 Medicago truncatula HOM05D004332 ORTHO05D005116 2.9e-25 118.2 74 75.7
THA.LOC104810775 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 2.9e-25 118.2 76 73.7
Ah.08g219640 Amaranthus hybridus HOM05D004332 ORTHO05D005116 3.8e-25 117.9 75 69.3
EL10Ac7g16034 Beta vulgaris HOM05D004332 ORTHO05D005116 5.0e-25 117.5 75 73.3
Carub.0004s1001 Capsella rubella HOM05D004332 ORTHO05D005116 5.0e-25 117.5 79 72.2
AUR62001771 Chenopodium quinoa HOM05D004332 ORTHO05D005116 5.0e-25 117.5 75 69.3
Sc12g0001450 Simmondsia chinensis HOM05D004332 ORTHO05D005116 5.0e-25 117.5 75 73.3
Atru.chr3.3947 Acer truncatum HOM05D004332 ORTHO05D005116 8.5e-25 116.7 63 85.7
RcHm_v2.0_Chr5g0065351 Rosa chinensis HOM05D004332 ORTHO05D005116 8.5e-25 116.7 73 76.7
Sp4g11830 Schrenkiella parvula HOM05D004332 ORTHO05D005116 8.5e-25 116.7 80 70.0
BcaC02g08120 Brassica carinata HOM05D004332 ORTHO05D005116 1.5e-24 115.9 80 68.8
BcaC02g11036 Brassica carinata HOM05D004332 ORTHO05D005116 1.5e-24 115.9 81 70.4
C04p21940 Brassica napus HOM05D004332 ORTHO05D005116 1.5e-24 115.9 81 70.4
C04p58150 Brassica napus HOM05D004332 ORTHO05D005116 1.5e-24 115.9 80 68.8
BolC4t23714H Brassica oleracea HOM05D004332 ORTHO05D005116 1.5e-24 115.9 81 70.4
BolC4t27343H Brassica oleracea HOM05D004332 ORTHO05D005116 1.5e-24 115.9 80 68.8
BcaB06g28270 Brassica carinata HOM05D004332 ORTHO05D005116 1.9e-24 115.5 80 68.8
Aa31sc23G410 Aethionema arabicum HOM05D004332 ORTHO05D005116 2.5e-24 115.2 78 69.2
CDE04G0625 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 2.5e-24 115.2 74 66.2
A07p19440 Brassica napus HOM05D004332 ORTHO05D005116 3.2e-24 114.8 81 69.1
BraA07t29650Z Brassica rapa HOM05D004332 ORTHO05D005116 3.2e-24 114.8 81 69.1
HanXRQChr07g0197291 Helianthus annuus HOM05D004332 ORTHO05D005116 5.5e-24 114.0 95 62.1
THA.LOC104826319 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 5.5e-24 114.0 80 70.0
CDE07G0755 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 9.4e-24 113.2 74 64.9
Nitab4.5_0000463g0140 Nicotiana tabacum HOM05D004332 ORTHO05D005116 1.6e-23 112.5 77 67.5
Nitab4.5_0001326g0120 Nicotiana tabacum HOM05D004332 ORTHO05D005116 2.1e-23 112.1 77 67.5
THA.LOC104800671 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 2.1e-23 112.1 79 68.4
SEGI_12680 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 8.0e-23 110.2 70 71.4
SEGI_11468 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 1.0e-22 109.8 70 71.4
Sc21g0005870 Simmondsia chinensis HOM05D004332 ORTHO05D005116 1.0e-22 109.8 75 72.0
PGSC0003DMG400030417 Solanum tuberosum HOM05D004332 ORTHO05D005116 4.0e-22 107.8 77 64.9
Lsat_1_v5_gn_8_73521 Lactuca sativa HOM05D004332 ORTHO05D005116 6.7e-22 107.1 74 67.6
CAN.G394.64 Capsicum annuum HOM05D004332 ORTHO05D005116 2.0e-21 105.5 64 71.9
Solyc06g076260.3 Solanum lycopersicum HOM05D004332 ORTHO05D005116 2.0e-21 105.5 64 70.3
PSO151G0214 Papaver somniferum HOM05D004332 ORTHO05D005116 2.2e-20 102.1 70 68.6
PSO339G1935 Papaver somniferum HOM05D004332 ORTHO05D005116 3.7e-20 101.3 70 68.6
Aqoxy1G00923 Aquilegia oxysepala HOM05D004332 ORTHO05D005116 6.3e-20 100.5 74 64.9
Os05g0110600 Oryza sativa ssp. japonica HOM05D004332 ORTHO05D005116 7.7e-18 93.6 75 56.0
Zm00001eb266910 Zea mays HOM05D004332 ORTHO05D005116 3.2e-16 88.2 78 52.6
Pp3c16_16760 Physcomitrium patens HOM05D004332 ORTHO05D005116 1.2e-15 86.3 63 58.7
Mapoly0045s0062 Marchantia polymorpha HOM05D004332 ORTHO05D005116 2.1e-15 85.5 64 50.0
SMO304G0081 Selaginella moellendorffii HOM05D004332 ORTHO05D005116 1.4e-14 82.8 50 62.0
AagrBONN_evm.TU.Sc2ySwM_228.3328 Anthoceros agrestis HOM05D004332 ORTHO05D005116 8.8e-14 80.1 70 55.7
Pp3c6_17300 Physcomitrium patens HOM05D004332 ORTHO05D005116 4.4e-13 77.8 64 46.9
HPP92_028206 Vanilla planifolia HOM05D004332 ORTHO05D005116 1.7e-12 75.9 60 61.7
Nn2g13368 Nelumbo nucifera HOM05D004332 ORTHO05D005116 8.3e-12 73.6 37 86.5
Eucgr.H02119 Eucalyptus grandis HOM05D004332 ORTHO05D005116 1.5e-08 62.8 40 72.5


User provided reference genes

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