Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 1.2e-163 579.7 292 100.0
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 1.7e-160 569.3 292 97.3
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 8.7e-125 450.7 299 77.9
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 1.1e-124 450.3 292 76.7
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 4.8e-123 444.9 292 75.3
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 9.0e-122 440.7 299 75.9
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 3.4e-121 438.7 293 75.1
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 2.5e-119 432.6 293 75.4
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 5.5e-119 431.4 292 75.0
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 1.4e-117 426.8 302 74.8
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 2.3e-117 426.0 300 73.7
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 3.0e-117 425.6 293 73.4
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 3.9e-117 425.2 291 74.9
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.1e-116 423.7 291 74.6
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 3.1e-114 415.6 291 72.5
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 1.5e-113 413.3 301 71.4
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 2.6e-113 412.5 290 72.4
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 7.7e-113 411.0 289 72.3
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.0e-112 410.6 328 66.5
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 1.0e-112 410.6 330 67.3
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 6.5e-112 407.9 303 68.0
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 5.5e-111 404.8 296 68.6
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 7.2e-111 404.4 287 72.5
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 7.2e-111 404.4 295 71.5
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 9.4e-111 404.1 294 70.4
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 7.9e-110 401.0 293 70.0
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 1.0e-109 400.6 296 68.6
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 6.7e-109 397.9 338 64.2
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 1.1e-108 397.1 279 69.9
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 1.5e-108 396.7 308 65.6
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 2.6e-108 396.0 288 70.1
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 3.3e-108 395.6 291 69.1
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 4.4e-108 395.2 291 69.4
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 7.4e-108 394.4 294 68.4
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 1.4e-106 390.2 294 68.0
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 2.4e-106 389.4 291 68.4
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 3.1e-106 389.0 273 74.7
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 7.0e-106 387.9 319 64.6
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 7.0e-106 387.9 294 67.7
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 9.1e-106 387.5 258 72.9
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 7.7e-105 384.4 292 68.5
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 1.3e-104 383.6 261 72.8
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 1.7e-104 383.3 294 67.3
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 2.9e-104 382.5 289 67.8
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 3.8e-104 382.1 288 70.5
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 3.8e-104 382.1 298 65.4
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 5.0e-104 381.7 291 66.3
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 5.0e-104 381.7 288 68.4
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 1.1e-103 380.6 279 69.5
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 1.1e-103 380.6 288 68.1
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 5.5e-103 378.3 275 71.3
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 2.1e-102 376.3 296 66.6
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 2.3e-101 372.9 300 65.0
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 5.2e-101 371.7 296 65.9
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 1.1e-100 370.5 300 65.0
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 1.5e-100 370.2 308 65.3
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 2.0e-100 369.8 299 64.5
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 2.6e-100 369.4 312 61.5
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 3.3e-100 369.0 292 66.1
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 4.4e-100 368.6 279 67.0
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 5.7e-100 368.2 293 65.5
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 7.5e-100 367.9 293 64.5
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 2.8e-99 365.9 289 66.8
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 1.1e-98 364.0 255 73.7
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 1.4e-98 363.6 292 65.1
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 1.8e-98 363.2 306 64.4
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 1.8e-98 363.2 230 80.4
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 2.4e-98 362.8 300 65.3
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 3.1e-98 362.5 303 64.7
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 3.1e-98 362.5 296 64.9
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 5.3e-98 361.7 306 64.1
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 7.0e-98 361.3 306 64.1
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 7.0e-98 361.3 306 64.1
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 7.0e-98 361.3 306 64.1
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 9.1e-98 360.9 271 70.5
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 9.1e-98 360.9 241 73.4
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 1.2e-97 360.5 240 70.8
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 1.6e-97 360.1 275 67.3
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 3.5e-97 359.0 350 56.9
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 3.5e-97 359.0 280 65.4
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 1.0e-96 357.5 290 65.5
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 1.0e-96 357.5 332 57.8
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 1.1e-95 354.0 300 62.0
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 3.6e-94 349.0 277 66.8
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 3.6e-94 349.0 315 60.0
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 3.6e-94 349.0 301 61.1
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 4.0e-93 345.5 293 63.1
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 8.8e-93 344.4 278 66.9
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 1.5e-92 343.6 293 64.8
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 2.6e-92 342.8 270 67.4
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 2.6e-92 342.8 270 67.4
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 2.6e-92 342.8 270 67.4
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 8.3e-91 337.8 228 75.9
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 2.0e-89 333.2 280 63.2
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 3.8e-88 328.9 240 66.2
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 1.9e-87 326.6 306 59.2
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 3.2e-87 325.9 227 69.2
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 4.1e-82 308.9 242 63.2
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.0e-80 304.3 229 69.9
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 1.7e-80 303.5 299 56.2
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 6.1e-78 295.0 457 42.0
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 1.0e-77 294.3 264 57.2
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 4.0e-77 292.4 278 54.7
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 5.7e-76 288.5 292 57.9
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 9.8e-76 287.7 243 63.4
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 8.0e-70 268.1 248 60.5
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 9.8e-68 261.2 194 70.1
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 4.1e-66 255.8 265 50.6
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 3.5e-65 252.7 214 57.9
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 3.9e-64 249.2 235 53.6
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 2.3e-61 240.0 229 52.8
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 4.6e-57 225.7 169 66.9
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 1.7e-56 223.8 282 44.0
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 2.5e-55 219.9 178 64.0
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 5.2e-53 212.2 170 62.9
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 1.7e-51 207.2 211 55.9
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 8.9e-45 184.9 155 60.0
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 2.2e-43 180.3 127 75.6
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 6.6e-40 168.7 150 54.0
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 1.6e-38 164.1 117 65.0
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 7.6e-36 155.2 89 77.5
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 2.2e-35 153.7 129 64.3
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 4.9e-35 152.5 115 68.7
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 6.4e-35 152.1 236 38.6
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 1.4e-29 134.4 87 71.3
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 2.4e-29 133.7 76 78.9
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 2.0e-28 130.6 115 57.4
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 7.9e-25 118.6 81 70.4
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 1.3e-24 117.9 77 74.0
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 1.3e-24 117.9 77 74.0
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 3.0e-24 116.7 67 82.1
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 1.1e-23 114.8 136 47.8
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 3.7e-22 109.8 74 71.6
TAR636G2897 Trochodendron aralioides HOM05D005444 ORTHO05D006773 5.8e-20 102.4 80 65.0
COL.COLO4_35627 Corchorus olitorius HOM05D005444 ORTHO05D001950 3.8e-19 99.8 105 54.3
TPR.G27777 Trifolium pratense HOM05D005444 ORTHO05D006773 2.5e-18 97.1 62 74.2
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 7.4e-15 85.5 41 90.2
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 1.6e-14 84.3 48 77.1
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 4.8e-14 82.8 44 84.1
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 4.8e-14 82.8 72 58.3
Glyma.11G138967 Glycine max HOM05D005444 ORTHO05D006773 6.3e-14 82.4 73 57.5
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 9.0e-13 78.6 46 76.1
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.6e-09 67.8 168 31.0
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 2.7e-09 67.0 76 51.3
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 3.0e-08 63.5 221 27.1


User provided reference genes

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