Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24045 Corylus avellana HOM05D007212 ORTHO05D009094 1.1e-127 461.8 228 100.0
Cfa011459 Carpinus fangiana HOM05D007212 ORTHO05D009094 6.3e-118 429.5 252 86.9
CiPaw.14G071200 Carya illinoinensis HOM05D007212 ORTHO05D009094 1.6e-97 361.7 254 73.2
Prupe.6G082100 Prunus persica HOM05D007212 ORTHO05D009094 3.0e-83 314.3 255 65.1
QL01p032998 Quercus lobata HOM05D007212 ORTHO05D009094 5.6e-82 310.1 221 73.8
MD11G1144200 Malus domestica HOM05D007212 ORTHO05D009094 7.5e-79 299.7 259 61.0
FAN11G2747 Fragaria x ananassa HOM05D007212 ORTHO05D009094 4.9e-78 297.0 255 61.6
FAN21G3687 Fragaria x ananassa HOM05D007212 ORTHO05D009094 8.3e-78 296.2 255 61.2
FvH4_3g35360 Fragaria vesca HOM05D007212 ORTHO05D009094 1.9e-77 295.0 255 61.2
FAN16G0386 Fragaria x ananassa HOM05D007212 ORTHO05D009094 5.4e-77 293.5 255 60.8
Cpa.g.sc190.19 Carica papaya HOM05D007212 ORTHO05D009094 1.0e-67 262.7 255 55.7
arahy.Tifrunner.gnm1.ann1.C93D89 Arachis hypogaea HOM05D007212 ORTHO05D009094 2.3e-67 261.5 253 55.3
arahy.Tifrunner.gnm1.ann1.0V2A2H Arachis hypogaea HOM05D007212 ORTHO05D009094 5.1e-67 260.4 253 54.9
Sed0018920 Sechium edule HOM05D007212 ORTHO05D009094 8.6e-67 259.6 252 56.0
Psat7g177640 Pisum sativum HOM05D007212 ORTHO05D009094 1.5e-66 258.8 255 56.5
TPR.G17150 Trifolium pratense HOM05D007212 ORTHO05D009094 3.3e-66 257.7 234 56.4
Lalb_Chr01g0001381 Lupinus albus HOM05D007212 ORTHO05D009094 9.6e-66 256.1 223 59.2
Potri.001G236800 Populus trichocarpa HOM05D007212 ORTHO05D009094 4.7e-65 253.8 250 53.2
Gorai.003G135500 Gossypium raimondii HOM05D007212 ORTHO05D009094 2.4e-64 251.5 257 53.7
Sabra16G0142600 Salix brachista HOM05D007212 ORTHO05D009094 4.0e-64 250.8 257 52.9
Glyma.11G098900 Glycine max HOM05D007212 ORTHO05D009094 1.5e-63 248.8 225 57.3
Medtr4g075270 Medicago truncatula HOM05D007212 ORTHO05D009094 2.6e-63 248.1 240 54.2
VMungo1127G0797 Vigna mungo HOM05D007212 ORTHO05D009094 7.6e-63 246.5 225 57.8
MELO3C035453.2 Cucumis melo HOM05D007212 ORTHO05D009094 1.7e-62 245.4 213 58.7
Atru.chr3.3834 Acer truncatum HOM05D007212 ORTHO05D009094 3.8e-62 244.2 221 57.0
Hma1.2p1_0094F.1_g047150 Hydrangea macrophylla HOM05D007212 ORTHO05D009094 4.9e-62 243.8 221 57.5
Phvul.011G027200 Phaseolus vulgaris HOM05D007212 ORTHO05D009094 1.4e-61 242.3 225 57.8
COL.COLO4_18464 Corchorus olitorius HOM05D007212 ORTHO05D009094 3.2e-61 241.1 234 56.4
Ciclev10027786m.g Citrus clementina HOM05D007212 ORTHO05D009094 5.4e-61 240.4 220 56.8
DCAR_015608 Daucus carota HOM05D007212 ORTHO05D009094 1.0e-59 236.1 224 52.7
Thecc.09G326300 Theobroma cacao HOM05D007212 ORTHO05D009094 1.0e-59 236.1 235 54.5
Eucgr.J02064 Eucalyptus grandis HOM05D007212 ORTHO05D009094 1.5e-58 232.3 253 50.2
PGR119G1050 Punica granatum HOM05D007212 ORTHO05D009094 1.5e-58 232.3 229 54.1
TAR633G0773 Trochodendron aralioides HOM05D007212 ORTHO05D009094 7.3e-58 229.9 221 54.3
PGR142G1175 Punica granatum HOM05D007212 ORTHO05D009094 2.1e-57 228.4 231 53.2
GSVIVG01025017001 Vitis vinifera HOM05D007212 ORTHO05D009094 2.1e-57 228.4 219 56.6
CSS0026864 Camellia sinensis var. sinensis HOM05D007212 ORTHO05D009094 4.8e-57 227.3 225 54.7
Lj3g0025740 Lotus japonicus HOM05D007212 ORTHO05D009094 1.1e-56 226.1 256 50.0
Nn2g10429 Nelumbo nucifera HOM05D007212 ORTHO05D009094 3.1e-56 224.6 229 53.7
Rhsim13G0085700 Rhododendron simsii HOM05D007212 ORTHO05D009094 9.0e-56 223.0 226 55.3
HanXRQChr08g0227881 Helianthus annuus HOM05D007212 ORTHO05D009094 1.2e-55 222.6 242 49.2
PSO339G3988 Papaver somniferum HOM05D007212 ORTHO05D009094 1.5e-55 222.2 240 48.3
Lsat_1_v5_gn_9_22380 Lactuca sativa HOM05D007212 ORTHO05D009094 4.5e-55 220.7 244 48.4
CAN.G764.6 Capsicum annuum HOM05D007212 ORTHO05D009094 1.7e-54 218.8 194 55.7
Migut.G01143 Erythranthe guttata HOM05D007212 ORTHO05D009094 2.9e-54 218.0 249 48.6
Oeu041026.1 Olea europaea HOM05D007212 ORTHO05D009094 4.9e-54 217.2 213 52.1
Glyma.12G024900 Glycine max HOM05D007212 ORTHO05D009094 1.9e-53 215.3 197 56.3
Solyc11g073270.1 Solanum lycopersicum HOM05D007212 ORTHO05D009094 5.4e-53 213.8 205 52.7
Sopen11g030900 Solanum pennellii HOM05D007212 ORTHO05D009094 5.4e-53 213.8 205 52.7
TWI79G1118 Tripterygium wilfordii HOM05D007212 ORTHO05D009094 9.3e-53 213.0 217 54.8
CDE09G0292 Ceratophyllum demersum HOM05D007212 ORTHO05D009094 2.7e-52 211.5 255 42.7
Sc09g0001880 Simmondsia chinensis HOM05D007212 ORTHO05D009094 3.5e-52 211.1 227 52.9
SalBow3G0436 Salvia bowleyana HOM05D007212 ORTHO05D009094 6.0e-52 210.3 248 46.0
Migut.D02115 Erythranthe guttata HOM05D007212 ORTHO05D009094 7.9e-52 209.9 226 50.9
vmacro03100 Vaccinium macrocarpon HOM05D007212 ORTHO05D009094 1.3e-51 209.1 220 50.9
Aqoxy4G02992 Aquilegia oxysepala HOM05D007212 ORTHO05D009094 1.1e-48 199.5 213 50.7
SHI05964 Sapria himalayana HOM05D007212 ORTHO05D009094 2.0e-47 195.3 238 45.8
Actinidia07048 Actinidia chinensis HOM05D007212 ORTHO05D009094 2.2e-46 191.8 176 55.7
THA.LOC104814860 Tarenaya hassleriana HOM05D007212 ORTHO05D009094 3.8e-46 191.0 218 50.0
AUR62040786 Chenopodium quinoa HOM05D001653 ORTHO05D001751 2.1e-44 185.3 237 46.8
Aa31sc23G60 Aethionema arabicum HOM05D007212 ORTHO05D009094 6.0e-44 183.7 190 50.0
SGA_v2.0_scaffold134G34680 Striga asiatica HOM05D007212 ORTHO05D009094 1.8e-43 182.2 216 46.8
MSTRG.21188 Avicennia marina HOM05D007212 ORTHO05D009094 2.3e-43 181.8 191 50.3
CARHR273510 Cardamine hirsuta HOM05D007212 ORTHO05D009094 3.0e-43 181.4 215 47.0
Thhalv10016210m.g Eutrema salsugineum HOM05D007212 ORTHO05D009094 6.7e-43 180.3 215 46.5
AL8G36470 Arabidopsis lyrata HOM05D007212 ORTHO05D009094 1.1e-42 179.5 222 46.4
ATR0580G451 Amborella trichopoda HOM05D007212 ORTHO05D009094 1.5e-42 179.1 250 39.6
Ah.02g128350 Amaranthus hybridus HOM05D007212 ORTHO05D009094 2.5e-42 178.3 234 44.9
Sp6g21610 Schrenkiella parvula HOM05D007212 ORTHO05D009094 2.5e-42 178.3 219 45.7
BraA10t43795Z Brassica rapa HOM05D007212 ORTHO05D009094 3.7e-41 174.5 201 46.3
Carub.0008s2053 Capsella rubella HOM05D007212 ORTHO05D009094 6.2e-41 173.7 213 46.0
AT5G59900 Arabidopsis thaliana HOM05D007212 ORTHO05D009094 1.4e-40 172.6 223 43.9
A10p17130 Brassica napus HOM05D007212 ORTHO05D009094 5.3e-40 170.6 213 45.5
C09p52430 Brassica napus HOM05D007212 ORTHO05D009094 9.0e-40 169.9 212 44.3
BolC9t58111H Brassica oleracea HOM05D007212 ORTHO05D009094 9.0e-40 169.9 212 44.3
BcaC04g19649 Brassica carinata HOM05D007212 ORTHO05D009094 1.2e-39 169.5 212 44.3
BcaB08g36211 Brassica carinata HOM05D007212 ORTHO05D009094 5.8e-39 167.2 183 46.4
MBI05_g20726_MAGBIO Magnolia biondii HOM05D007212 ORTHO05D009094 1.9e-37 162.2 225 44.0
Lj1P206T25 Lonicera japonica HOM05D007212 ORTHO05D009094 4.3e-34 151.0 137 58.4
FAN03G3455 Fragaria x ananassa HOM05D007212 ORTHO05D009094 9.3e-29 133.3 91 73.6
BcaC04g19592 Brassica carinata HOM05D006590 ORTHO05D008427 1.6e-28 132.5 174 42.5
Migut.G01107 Erythranthe guttata HOM05D007212 ORTHO05D009094 6.3e-25 120.6 145 49.7
FAN21G0605 Fragaria x ananassa HOM05D007212 ORTHO05D009094 6.3e-25 120.6 85 71.8
FAN21G2645 Fragaria x ananassa HOM05D007212 ORTHO05D009094 6.3e-25 120.6 85 71.8
FAN27G2961 Fragaria x ananassa HOM05D007212 ORTHO05D009094 6.3e-25 120.6 85 71.8
FAN28G1733 Fragaria x ananassa HOM05D007212 ORTHO05D009094 6.3e-25 120.6 85 71.8
EL10Ac6g14030 Beta vulgaris HOM05D007212 ORTHO05D009094 8.2e-25 120.2 158 47.5
SEGI_04297 Sequoiadendron giganteum HOM05D007212 ORTHO05D009094 3.1e-24 118.2 220 32.3
Migut.G01106 Erythranthe guttata HOM05D007212 ORTHO05D009094 1.6e-20 105.9 109 46.8
RcHm_v2.0_Chr5g0063471 Rosa chinensis HOM05D007212 ORTHO05D009094 2.7e-20 105.1 139 43.9
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 2.6e-18 98.6 118 44.9
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 5.7e-18 97.4 118 44.9
Gohir.D03G128800 Gossypium hirsutum HOM05D007212 ORTHO05D009094 2.2e-17 95.5 81 56.8
Gohir.A03G039400 Gossypium hirsutum HOM05D007212 ORTHO05D009094 2.8e-17 95.1 81 56.8
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 1.4e-16 92.8 118 44.1
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 1.8e-16 92.4 118 44.1
Ca_19008_v3 Cicer arietinum L. HOM05D007212 ORTHO05D009094 4.1e-16 91.3 74 63.5
Nitab4.5_0003782g0040 Nicotiana tabacum HOM05D007212 ORTHO05D009094 1.5e-15 89.4 74 58.1
Cpa.g.sc190.20 Carica papaya HOM05D007212 ORTHO05D009094 1.3e-14 86.3 48 81.2
Lj1A206G45 Lonicera japonica HOM05D007212 ORTHO05D009094 2.2e-14 85.5 64 62.5
Dinv32867 Davidia involucrata HOM05D007212 ORTHO05D009094 1.9e-13 82.4 47 76.6
Manes.01G128700 Manihot esculenta HOM05D007212 ORTHO05D009094 4.2e-13 81.3 49 73.5
FAN03G0763 Fragaria x ananassa HOM05D007212 ORTHO05D009094 6.1e-12 77.4 56 67.9
FAN06G0240 Fragaria x ananassa HOM05D007212 ORTHO05D009094 6.1e-12 77.4 56 67.9
ECA247G1906 Erigeron canadensis HOM05D007212 ORTHO05D009094 1.4e-11 76.3 72 54.2
Nitab4.5_0005583g0010 Nicotiana tabacum HOM05D006858 ORTHO05D008767 3.9e-11 74.7 239 26.4
Peaxi162Scf00016g00164 Petunia axillaris HOM05D006858 ORTHO05D008767 3.9e-11 74.7 233 24.0
Manes.10G064000 Manihot esculenta HOM05D007496 ORTHO05D009479 6.7e-11 73.9 245 24.1
EL10Ac6g14029 Beta vulgaris HOM05D007212 ORTHO05D009094 2.6e-10 72.0 50 64.0
Sp2g13565 Schrenkiella parvula HOM05D007496 ORTHO05D009479 3.3e-10 71.6 183 24.6
Potri.009G105600 Populus trichocarpa HOM05D006858 ORTHO05D008767 5.7e-10 70.9 176 28.4
CDE12G0616 Ceratophyllum demersum HOM05D007496 ORTHO05D009479 7.4e-10 70.5 181 22.1
Sabra09G0080800 Salix brachista HOM05D006858 ORTHO05D008767 9.7e-10 70.1 176 27.3
Thhalv10003688m.g Eutrema salsugineum HOM05D007496 ORTHO05D009479 1.7e-09 69.3 191 20.9
Nitab4.5_0000610g0130 Nicotiana tabacum HOM05D007212 ORTHO05D009094 2.2e-09 68.9 46 67.4
AT2G02150 Arabidopsis thaliana HOM05D007496 ORTHO05D009479 2.8e-09 68.6 165 25.5
FvH4_4g14110 Fragaria vesca HOM05D007340 ORTHO05D008979 2.8e-09 68.6 180 25.6
HPP92_021332 Vanilla planifolia HOM05D007212 ORTHO05D000003 2.8e-09 68.6 49 59.2
ATR0829G190 Amborella trichopoda HOM05D007291 ORTHO05D009038 3.7e-09 68.2 231 22.9
AL5G11430 Arabidopsis lyrata HOM05D007496 ORTHO05D009479 3.7e-09 68.2 180 23.9
Cc01_g12460 Coffea canephora HOM05D007212 ORTHO05D009094 6.3e-09 67.4 76 46.1
vmacro19173 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 1.1e-08 66.6 223 25.1
Hma1.2p1_0624F.1_g191340 Hydrangea macrophylla HOM05D007212 ORTHO05D009094 1.4e-08 66.2 47 63.8
FAN12G4271 Fragaria x ananassa HOM05D007340 ORTHO05D008979 1.8e-08 65.9 180 25.0
Sopen01g050630 Solanum pennellii HOM05D006858 ORTHO05D008767 1.8e-08 65.9 186 26.3
Hma1.2p1_0294F.1_g116420 Hydrangea macrophylla HOM05D007551 ORTHO05D009424 2.4e-08 65.5 207 25.6
Solyc01g108410.3 Solanum lycopersicum HOM05D006858 ORTHO05D008767 3.1e-08 65.1 178 27.0
ATR0317G062 Amborella trichopoda HOM05D007496 ORTHO05D009479 7.0e-08 63.9 199 23.1
QL03p041883 Quercus lobata HOM05D007496 ORTHO05D009479 7.0e-08 63.9 162 27.2
Gohir.A03G191600 Gossypium hirsutum HOM05D006858 ORTHO05D008767 9.1e-08 63.5 176 24.4
Gorai.003G116400 Gossypium raimondii HOM05D005764 ORTHO05D006600 1.2e-07 63.2 230 26.1
Sed0020593 Sechium edule HOM05D006080 ORTHO05D007382 1.2e-07 63.2 202 26.2
Haze_01569 Corylus avellana HOM05D007496 ORTHO05D009479 1.6e-07 62.8 178 24.7
MBI05_g28547_MAGBIO Magnolia biondii HOM05D007212 ORTHO05D009094 1.6e-07 62.8 49 59.2
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 2.0e-07 62.4 256 21.9
MSTRG.10708 Avicennia marina HOM05D007291 ORTHO05D009038 2.6e-07 62.0 208 25.5
ClCG03G004730 Citrullus lanatus HOM05D002890 ORTHO05D009847 2.6e-07 62.0 186 23.1
Duzib235G0255 Durio zibethinus HOM05D002890 ORTHO05D009847 2.6e-07 62.0 182 25.8
Lj1C797T15 Lonicera japonica HOM05D005764 ORTHO05D006600 2.6e-07 62.0 204 24.5
Lj1C797T16 Lonicera japonica HOM05D005764 ORTHO05D006600 2.6e-07 62.0 204 24.5
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 3.5e-07 61.6 165 25.5
Potri.010G098400 Populus trichocarpa HOM05D007496 ORTHO05D009479 3.5e-07 61.6 210 24.8
Rhsim08G0196300 Rhododendron simsii HOM05D005764 ORTHO05D006600 3.5e-07 61.6 241 24.5
Sabra10G0070900 Salix brachista HOM05D007496 ORTHO05D009479 3.5e-07 61.6 162 26.5
AUR62017779 Chenopodium quinoa HOM05D007496 ORTHO05D009479 4.5e-07 61.2 194 21.6
Lalb_Chr07g0188091 Lupinus albus HOM05D007496 ORTHO05D009479 4.5e-07 61.2 163 27.6
BcaC06g31248 Brassica carinata HOM05D007496 ORTHO05D009479 5.9e-07 60.8 169 26.0
Cfa021290 Carpinus fangiana HOM05D007496 ORTHO05D009479 5.9e-07 60.8 163 25.8
PGSC0003DMG401025809 Solanum tuberosum HOM05D006858 ORTHO05D008767 5.9e-07 60.8 243 24.3
MELO3C033967.2 Cucumis melo HOM05D007496 ORTHO05D009479 1.3e-06 59.7 207 22.2
CsaV3_1G013200 Cucumis sativus L. HOM05D007212 ORTHO05D009094 1.3e-06 59.7 42 64.3
DCAR_021406 Daucus carota HOM05D005764 ORTHO05D006600 1.3e-06 59.7 218 23.4
PSO017G0179 Papaver somniferum HOM05D005764 ORTHO05D006600 1.3e-06 59.7 217 22.6
SEGI_34198 Sequoiadendron giganteum HOM05D007545 ORTHO05D009579 1.3e-06 59.7 237 22.8
TAR624G0355 Trochodendron aralioides HOM05D002890 ORTHO05D009847 1.3e-06 59.7 175 24.6
Atru.chr11.1049 Acer truncatum HOM05D007496 ORTHO05D009479 1.7e-06 59.3 197 24.4
Actinidia28812 Actinidia chinensis HOM05D007291 ORTHO05D009038 1.7e-06 59.3 118 31.4
C01p15110 Brassica napus HOM05D007956 ORTHO05D010152 1.7e-06 59.3 198 24.7
BolC1t01460H Brassica oleracea HOM05D007956 ORTHO05D010152 1.7e-06 59.3 198 24.7
Prupe.5G192300 Prunus persica HOM05D002453 ORTHO05D002107 1.7e-06 59.3 161 26.1
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 2.2e-06 58.9 186 24.2
MD06G1131900 Malus domestica HOM05D005764 ORTHO05D006600 2.2e-06 58.9 221 24.0
MD14G1148300 Malus domestica HOM05D005764 ORTHO05D006600 2.2e-06 58.9 220 23.2
ClCG01G007050 Citrullus lanatus HOM05D007496 ORTHO05D009479 2.9e-06 58.5 207 22.7
CsaV3_5G017450 Cucumis sativus L. HOM05D007496 ORTHO05D009479 2.9e-06 58.5 207 22.2
PSO170G6018 Papaver somniferum HOM05D007340 ORTHO05D008979 2.9e-06 58.5 189 21.7
SEGI_11241 Sequoiadendron giganteum HOM05D007496 ORTHO05D009479 2.9e-06 58.5 206 23.3
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 3.8e-06 58.2 175 24.0
SEGI_02979 Sequoiadendron giganteum HOM05D007551 ORTHO05D006600 3.8e-06 58.2 190 23.7
HPP92_001299 Vanilla planifolia HOM05D007291 ORTHO05D009038 3.8e-06 58.2 189 25.4
BraA06t27256Z Brassica rapa HOM05D007496 ORTHO05D009479 5.0e-06 57.8 167 23.4
RcHm_v2.0_Chr4g0405931 Rosa chinensis HOM05D007551 ORTHO05D009424 5.0e-06 57.8 168 25.0
Aa31LG2G7790 Aethionema arabicum HOM05D007496 ORTHO05D009479 6.5e-06 57.4 183 23.0
Aqoxy5G03884 Aquilegia oxysepala HOM05D007496 ORTHO05D009479 6.5e-06 57.4 113 29.2
CiPaw.05G161700 Carya illinoinensis HOM05D007496 ORTHO05D009479 6.5e-06 57.4 163 26.4
COL.COLO4_05199 Corchorus olitorius HOM05D007455 ORTHO05D009431 6.5e-06 57.4 172 25.6
Lsat_1_v5_gn_6_75081 Lactuca sativa HOM05D007551 ORTHO05D009424 6.5e-06 57.4 166 28.3
Medtr7g090340 Medicago truncatula HOM05D006931 ORTHO05D008782 6.5e-06 57.4 244 22.1
QL05p074803 Quercus lobata HOM05D007956 ORTHO05D010152 6.5e-06 57.4 217 24.4
SEGI_21536 Sequoiadendron giganteum HOM05D007639 ORTHO05D009509 6.5e-06 57.4 172 23.8
A06p43780 Brassica napus HOM05D007496 ORTHO05D009479 8.5e-06 57.0 167 23.4
BraA01t01197Z Brassica rapa HOM05D007956 ORTHO05D010152 8.5e-06 57.0 198 23.2
Carub.0005s0122 Capsella rubella HOM05D007496 ORTHO05D009479 8.5e-06 57.0 171 21.6
Duzib132G0284 Durio zibethinus HOM05D006858 ORTHO05D008767 8.5e-06 57.0 176 23.3
Nn1g03517 Nelumbo nucifera HOM05D002890 ORTHO05D009847 8.5e-06 57.0 175 23.4
TAR633G1897 Trochodendron aralioides HOM05D007551 ORTHO05D009424 8.5e-06 57.0 187 25.1


User provided reference genes

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